Wall clock time and date at job start Tue Mar 31 2020 15:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47577 * 2 1 4 4 S 1.81405 * 109.47309 * 239.99568 * 2 1 3 5 5 C 1.81400 * 102.99552 * 65.00152 * 4 2 1 6 6 C 1.50702 * 109.46975 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00326 * 359.72745 * 6 5 4 8 8 C 1.37881 * 120.00200 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99711 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00283 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47044 * 60.00056 * 10 8 6 12 12 H 1.48500 * 109.47115 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46883 * 300.00305 * 10 8 6 14 14 C 1.50701 * 109.47110 * 119.99838 * 2 1 3 15 15 O 1.21292 * 120.00155 * 100.00030 * 14 2 1 16 16 N 1.34773 * 120.00256 * 280.00028 * 14 2 1 17 17 C 1.40026 * 120.00563 * 175.37386 * 16 14 2 18 18 C 1.38874 * 120.04288 * 35.07903 * 17 16 14 19 19 C 1.38090 * 119.95648 * 180.02562 * 18 17 16 20 20 C 1.38495 * 120.04237 * 0.02562 * 19 18 17 21 21 F 1.35104 * 119.95112 * 180.02562 * 20 19 18 22 22 C 1.38447 * 120.09269 * 359.97438 * 20 19 18 23 23 N 1.48018 * 119.97967 * 180.02562 * 22 20 19 24 24 O 1.21800 * 119.99915 * 180.02562 * 23 22 20 25 25 O 1.21799 * 120.00073 * 0.02562 * 23 22 20 26 26 C 1.38136 * 120.04500 * 359.77243 * 22 20 19 27 27 H 1.08995 * 109.47251 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46942 * 300.00210 * 1 2 3 29 29 H 1.09001 * 109.47218 * 59.99922 * 1 2 3 30 30 H 1.09003 * 109.47527 * 60.00488 * 5 4 2 31 31 H 1.08998 * 109.47433 * 299.99943 * 5 4 2 32 32 H 0.97002 * 120.00142 * 179.97438 * 9 8 6 33 33 H 0.97005 * 119.99757 * 355.37225 * 16 14 2 34 34 H 1.08000 * 120.02540 * 0.03121 * 18 17 16 35 35 H 1.08006 * 119.97932 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.02423 * 180.26919 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8553 -1.4811 5 6 1.5664 0.2152 -2.8308 6 6 1.9985 -0.3691 -4.1511 7 1 2.5626 -1.2897 -4.1756 8 6 1.6779 0.2744 -5.3277 9 7 0.9956 1.3982 -5.2977 10 14 2.2128 -0.4502 -6.9643 11 1 1.6223 -1.8034 -7.1231 12 1 1.7477 0.4262 -8.0692 13 1 3.6940 -0.5489 -7.0014 14 6 2.0323 -0.7104 1.2305 15 8 2.4064 -1.8617 1.1558 16 7 2.0658 -0.0664 2.4139 17 6 2.4403 -0.7539 3.5749 18 6 3.4099 -1.7462 3.5131 19 6 3.7775 -2.4234 4.6590 20 6 3.1794 -2.1140 5.8693 21 9 3.5408 -2.7774 6.9893 22 6 2.2126 -1.1251 5.9330 23 7 1.5754 -0.7961 7.2279 24 8 0.7244 0.0735 7.2843 25 8 1.9021 -1.3949 8.2370 26 6 1.8458 -0.4417 4.7900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.0002 1.2084 -2.7142 31 1 0.4792 0.2880 -2.8037 32 1 0.7703 1.8512 -6.1254 33 1 1.8306 0.8735 2.4615 34 1 3.8763 -1.9880 2.5695 35 1 4.5318 -3.1949 4.6115 36 1 1.0946 0.3326 4.8409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840214592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:32 Heat of formation + Delta-G solvation = -55.433831 kcal Electronic energy + Delta-G solvation = -24173.653197 eV Core-core repulsion = 20088.306570 eV Total energy + Delta-G solvation = -4085.346627 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.66756 -42.47540 -41.09497 -39.00343 -36.87027 -35.27503 -33.43284 -33.17429 -32.54850 -30.02632 -28.62037 -27.00077 -25.09662 -23.73128 -23.28465 -22.92416 -21.08761 -19.76554 -19.06943 -18.29158 -17.98286 -17.91906 -17.28216 -16.58471 -16.53445 -16.21495 -15.55757 -15.47397 -15.00711 -14.64796 -14.44402 -14.18989 -13.69671 -13.52879 -13.37534 -12.69634 -12.58965 -12.45749 -12.38415 -11.90814 -11.87490 -11.76915 -11.52155 -11.44800 -10.99085 -10.92649 -10.80565 -10.33417 -10.06538 -10.03330 -9.71015 -8.96081 -8.91005 -8.70721 -6.87190 -6.30009 -4.34594 -0.65634 0.16509 0.87138 0.88427 1.92141 2.16613 2.58059 2.75512 3.15443 3.21900 3.25423 3.29329 3.60072 3.76869 4.07771 4.14927 4.24065 4.27463 4.58767 4.75352 4.88081 4.89501 5.05755 5.07655 5.27933 5.35078 5.49479 5.50465 5.75121 5.89374 6.07658 6.13196 6.75451 6.93441 6.95910 7.26451 7.64394 7.66018 7.88815 8.67035 9.29263 10.81173 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035268 B = 0.002157 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.735509 B =12978.302102 C =13627.299081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.105 0.895 4 S -0.232 6.232 5 C 0.079 3.921 6 C -0.514 4.514 7 H 0.067 0.933 8 C 0.067 3.933 9 N -0.892 5.892 10 Si 0.907 3.093 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.542 3.458 15 O -0.491 6.491 16 N -0.672 5.672 17 C 0.153 3.847 18 C -0.042 4.042 19 C -0.132 4.132 20 C 0.152 3.848 21 F -0.104 7.104 22 C -0.065 4.065 23 N 0.032 4.968 24 O -0.155 6.155 25 O -0.147 6.147 26 C -0.064 4.064 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.419 0.581 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -1.272 20.190 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.229 4.229 3 H 0.123 0.877 4 S -0.005 6.005 5 C -0.068 4.068 6 C -0.554 4.554 7 H 0.085 0.915 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.734 3.266 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.329 3.671 15 O -0.362 6.362 16 N -0.320 5.320 17 C 0.056 3.944 18 C -0.062 4.062 19 C -0.152 4.152 20 C 0.130 3.870 21 F -0.082 7.082 22 C -0.151 4.151 23 N 0.552 4.448 24 O -0.371 6.371 25 O -0.364 6.364 26 C -0.085 4.085 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.256 0.744 34 H 0.189 0.811 35 H 0.183 0.817 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.563 -3.074 19.290 19.856 hybrid contribution -0.747 1.451 -0.258 1.653 sum 2.815 -1.623 19.032 19.307 Atomic orbital electron populations 1.21999 0.90817 1.03950 1.03157 1.23172 1.00803 1.03278 0.95656 0.87699 1.87229 1.75205 1.39855 0.98190 1.21206 0.99015 0.94954 0.91595 1.20577 1.36570 1.09555 0.88689 0.91471 1.24947 0.94678 0.94750 0.99330 1.69928 1.38245 1.16462 1.28377 0.86396 0.79242 0.79097 0.81861 1.19819 1.21015 1.19863 1.20398 0.76616 0.86803 0.83260 1.90725 1.44141 1.16945 1.84424 1.43608 1.68658 1.14478 1.05228 1.17459 0.94873 0.96159 0.85931 1.21795 0.92094 0.92314 1.00036 1.21250 1.02124 1.02626 0.89220 1.17361 0.94097 0.91038 0.84486 1.91670 1.89725 1.77931 1.48866 1.20859 1.03723 1.04850 0.85630 1.43297 0.99728 0.99556 1.02196 1.94553 1.25182 1.24902 1.92434 1.94618 1.66500 1.51272 1.23995 1.20593 0.98804 1.00147 0.88985 0.90904 0.92343 0.90004 0.94626 0.94246 0.92350 0.74351 0.81080 0.81674 0.81608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.08 37.15 0.34 -1.41 16 2 C -0.10 -1.35 3.18 -27.89 -0.09 -1.44 16 3 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 4 S -0.23 -4.63 20.32 -107.50 -2.18 -6.82 16 5 C 0.08 1.88 5.39 36.01 0.19 2.08 16 6 C -0.51 -13.77 9.13 -34.44 -0.31 -14.08 16 7 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 10 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 14 C 0.54 6.76 6.85 -10.99 -0.08 6.68 16 15 O -0.49 -7.64 13.48 5.55 0.07 -7.57 16 16 N -0.67 -5.61 5.34 -9.85 -0.05 -5.66 16 17 C 0.15 1.29 6.30 -83.66 -0.53 0.76 16 18 C -0.04 -0.37 8.70 -39.40 -0.34 -0.71 16 19 C -0.13 -0.99 10.02 -39.54 -0.40 -1.39 16 20 C 0.15 1.41 7.25 -39.41 -0.29 1.12 16 21 F -0.10 -1.07 15.47 2.25 0.03 -1.04 16 22 C -0.07 -0.65 6.85 -79.91 -0.55 -1.19 16 23 N 0.03 0.38 4.45 33.98 0.15 0.53 16 24 O -0.16 -1.88 18.45 -29.46 -0.54 -2.43 16 25 O -0.15 -1.93 17.42 -29.46 -0.51 -2.45 16 26 C -0.06 -0.51 9.47 -39.40 -0.37 -0.88 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.14 6.92 -51.93 -0.36 0.78 16 30 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.04 0.96 7.14 -51.93 -0.37 0.59 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 33 H 0.42 2.15 8.82 -40.82 -0.36 1.79 16 34 H 0.17 1.66 6.23 -52.49 -0.33 1.34 16 35 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.17 1.01 7.61 -52.49 -0.40 0.61 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -31.14 340.11 -8.18 -39.32 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.47 Total: -1.90 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.52 Total: -8.75 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 0.84 Total: -29.06 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.98 Total: -12.44 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.03 Total: -1.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -2.18 Total: -6.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.14 -8.18 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840214592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.113 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds