Wall clock time and date at job start Tue Mar 31 2020 15:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47577 * 2 1 4 4 S 1.81405 * 109.47309 * 239.99568 * 2 1 3 5 5 C 1.81400 * 102.99552 * 65.00152 * 4 2 1 6 6 C 1.50702 * 109.46975 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00326 * 359.72745 * 6 5 4 8 8 C 1.37881 * 120.00200 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99711 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00283 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47044 * 60.00056 * 10 8 6 12 12 H 1.48500 * 109.47115 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46883 * 300.00305 * 10 8 6 14 14 C 1.50701 * 109.47110 * 119.99838 * 2 1 3 15 15 O 1.21292 * 120.00155 * 100.00030 * 14 2 1 16 16 N 1.34773 * 120.00256 * 280.00028 * 14 2 1 17 17 C 1.40026 * 120.00563 * 175.37386 * 16 14 2 18 18 C 1.38874 * 120.04288 * 35.07903 * 17 16 14 19 19 C 1.38090 * 119.95648 * 180.02562 * 18 17 16 20 20 C 1.38495 * 120.04237 * 0.02562 * 19 18 17 21 21 F 1.35104 * 119.95112 * 180.02562 * 20 19 18 22 22 C 1.38447 * 120.09269 * 359.97438 * 20 19 18 23 23 N 1.48018 * 119.97967 * 180.02562 * 22 20 19 24 24 O 1.21800 * 119.99915 * 180.02562 * 23 22 20 25 25 O 1.21799 * 120.00073 * 0.02562 * 23 22 20 26 26 C 1.38136 * 120.04500 * 359.77243 * 22 20 19 27 27 H 1.08995 * 109.47251 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46942 * 300.00210 * 1 2 3 29 29 H 1.09001 * 109.47218 * 59.99922 * 1 2 3 30 30 H 1.09003 * 109.47527 * 60.00488 * 5 4 2 31 31 H 1.08998 * 109.47433 * 299.99943 * 5 4 2 32 32 H 0.97002 * 120.00142 * 179.97438 * 9 8 6 33 33 H 0.97005 * 119.99757 * 355.37225 * 16 14 2 34 34 H 1.08000 * 120.02540 * 0.03121 * 18 17 16 35 35 H 1.08006 * 119.97932 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.02423 * 180.26919 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8553 -1.4811 5 6 1.5664 0.2152 -2.8308 6 6 1.9985 -0.3691 -4.1511 7 1 2.5626 -1.2897 -4.1756 8 6 1.6779 0.2744 -5.3277 9 7 0.9956 1.3982 -5.2977 10 14 2.2128 -0.4502 -6.9643 11 1 1.6223 -1.8034 -7.1231 12 1 1.7477 0.4262 -8.0692 13 1 3.6940 -0.5489 -7.0014 14 6 2.0323 -0.7104 1.2305 15 8 2.4064 -1.8617 1.1558 16 7 2.0658 -0.0664 2.4139 17 6 2.4403 -0.7539 3.5749 18 6 3.4099 -1.7462 3.5131 19 6 3.7775 -2.4234 4.6590 20 6 3.1794 -2.1140 5.8693 21 9 3.5408 -2.7774 6.9893 22 6 2.2126 -1.1251 5.9330 23 7 1.5754 -0.7961 7.2279 24 8 0.7244 0.0735 7.2843 25 8 1.9021 -1.3949 8.2370 26 6 1.8458 -0.4417 4.7900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.0002 1.2084 -2.7142 31 1 0.4792 0.2880 -2.8037 32 1 0.7703 1.8512 -6.1254 33 1 1.8306 0.8735 2.4615 34 1 3.8763 -1.9880 2.5695 35 1 4.5318 -3.1949 4.6115 36 1 1.0946 0.3326 4.8409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840214592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:31 Heat of formation + Delta-G solvation = -73.172015 kcal Electronic energy + Delta-G solvation = -24174.422383 eV Core-core repulsion = 20088.306570 eV Total energy + Delta-G solvation = -4086.115812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.42601 -43.34734 -41.95708 -39.85700 -37.78047 -36.15157 -35.29152 -34.38196 -33.27881 -30.86562 -30.53005 -27.82763 -26.08297 -25.22007 -24.44332 -23.82241 -22.02124 -20.57525 -19.96687 -19.10174 -18.99247 -18.83439 -18.40473 -18.08079 -17.38244 -17.09736 -16.98705 -16.46279 -16.32917 -15.62395 -15.46098 -15.03179 -14.88091 -14.56830 -14.40355 -14.26593 -14.12416 -13.69562 -13.32471 -13.17698 -12.96397 -12.84561 -12.69915 -12.56305 -12.40751 -12.39735 -11.87664 -11.77760 -11.59581 -11.21292 -10.85492 -10.72685 -10.57653 -9.65756 -8.49461 -8.32983 -6.44617 -1.47619 -0.51518 0.04217 0.07087 0.65747 1.20414 1.41490 1.43064 1.51675 1.67234 1.96222 2.00482 2.37365 2.45627 3.02461 3.11908 3.25945 3.42911 3.50969 3.77983 3.81594 3.98924 4.13838 4.24919 4.59163 4.61214 4.66486 4.70680 4.80420 4.96735 4.97593 5.03878 5.16313 5.31546 5.57889 5.91279 6.02996 6.31820 6.61951 6.76548 7.23118 8.78286 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035268 B = 0.002157 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.735509 B =12978.302102 C =13627.299081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.131 0.869 4 S -0.266 6.266 5 C 0.088 3.912 6 C -0.538 4.538 7 H 0.058 0.942 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.969 3.031 11 H -0.269 1.269 12 H -0.276 1.276 13 H -0.268 1.268 14 C 0.550 3.450 15 O -0.525 6.525 16 N -0.649 5.649 17 C 0.148 3.852 18 C -0.043 4.043 19 C -0.118 4.118 20 C 0.146 3.854 21 F -0.113 7.113 22 C -0.077 4.077 23 N 0.033 4.967 24 O -0.148 6.148 25 O -0.187 6.187 26 C -0.045 4.045 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.020 0.980 31 H 0.025 0.975 32 H 0.270 0.730 33 H 0.438 0.562 34 H 0.164 0.836 35 H 0.190 0.810 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 -0.843 20.689 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.216 4.216 3 H 0.149 0.851 4 S -0.039 6.039 5 C -0.059 4.059 6 C -0.577 4.577 7 H 0.076 0.924 8 C -0.182 4.182 9 N -0.559 5.559 10 Si 0.793 3.207 11 H -0.194 1.194 12 H -0.201 1.201 13 H -0.193 1.193 14 C 0.336 3.664 15 O -0.400 6.400 16 N -0.298 5.298 17 C 0.051 3.949 18 C -0.064 4.064 19 C -0.138 4.138 20 C 0.124 3.876 21 F -0.091 7.091 22 C -0.162 4.162 23 N 0.549 4.451 24 O -0.368 6.368 25 O -0.395 6.395 26 C -0.066 4.066 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.279 0.721 34 H 0.181 0.819 35 H 0.208 0.792 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.658 -2.656 19.863 20.370 hybrid contribution -0.782 1.362 -0.319 1.603 sum 2.876 -1.294 19.544 19.796 Atomic orbital electron populations 1.21959 0.89531 1.03623 1.04456 1.23208 1.01776 1.03725 0.92916 0.85148 1.87142 1.75852 1.40379 1.00572 1.20832 0.97817 0.94687 0.92561 1.20926 1.36707 1.09483 0.90582 0.92399 1.25787 0.94563 0.95064 1.02768 1.70015 1.39047 1.17479 1.29378 0.85432 0.79005 0.78478 0.77793 1.19398 1.20134 1.19293 1.19999 0.76390 0.86178 0.83790 1.90730 1.45887 1.18373 1.84982 1.43221 1.67504 1.15169 1.03880 1.17424 0.95189 0.96417 0.85832 1.21829 0.92155 0.92388 0.99992 1.21425 1.01887 1.02495 0.87958 1.17577 0.94258 0.91038 0.84730 1.91651 1.89819 1.78128 1.49462 1.20993 1.04391 1.05867 0.84998 1.43548 0.99551 0.99212 1.02759 1.94522 1.25009 1.24575 1.92665 1.94625 1.67579 1.52279 1.25038 1.20696 0.98378 0.99737 0.87778 0.92100 0.87746 0.91851 0.96151 0.95701 0.92075 0.72118 0.81868 0.79231 0.79287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.08 71.98 0.65 -2.48 16 2 C -0.08 -2.18 3.18 29.85 0.09 -2.09 16 3 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 4 S -0.27 -10.69 20.32 -56.49 -1.15 -11.84 16 5 C 0.09 4.30 5.39 71.24 0.38 4.69 16 6 C -0.54 -29.35 9.13 25.60 0.23 -29.12 16 7 H 0.06 3.19 7.71 -2.91 -0.02 3.17 16 8 C 0.02 1.05 5.46 84.66 0.46 1.51 16 9 N -0.92 -51.38 13.29 21.45 0.28 -51.09 16 10 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 14 C 0.55 12.39 6.85 87.66 0.60 12.99 16 15 O -0.53 -15.60 13.48 -3.07 -0.04 -15.64 16 16 N -0.65 -8.57 5.34 -303.46 -1.62 -10.19 16 17 C 0.15 2.05 6.30 38.13 0.24 2.29 16 18 C -0.04 -0.65 8.70 22.39 0.19 -0.46 16 19 C -0.12 -1.51 10.02 22.30 0.22 -1.29 16 20 C 0.15 2.46 7.25 22.38 0.16 2.62 16 21 F -0.11 -2.24 15.47 44.97 0.70 -1.54 16 22 C -0.08 -1.37 6.85 36.40 0.25 -1.12 16 23 N 0.03 0.74 4.45 -46.40 -0.21 0.54 16 24 O -0.15 -3.32 18.45 18.89 0.35 -2.98 16 25 O -0.19 -4.92 17.42 18.89 0.33 -4.59 16 26 C -0.04 -0.57 9.47 22.39 0.21 -0.36 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.72 6.92 -2.39 -0.02 1.70 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.02 1.25 7.14 -2.39 -0.02 1.23 16 32 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.44 2.55 8.82 -92.70 -0.82 1.73 16 34 H 0.16 2.89 6.23 -2.91 -0.02 2.87 16 35 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.19 1.51 7.61 -2.91 -0.02 1.49 16 Total: -1.00 -69.22 340.11 4.71 -64.51 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 0.33 Total: 1.43 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 3.71 Total: -12.80 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -1.54 Total: -60.75 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.64 Total: -23.20 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.70 Total: -1.54 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.15 Total: -11.84 kcal Total: -69.22 4.71 -64.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840214592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.666 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds