Wall clock time and date at job start Tue Mar 31 2020 15:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48503 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46921 * 300.00504 * 3 2 1 6 6 H 1.48494 * 109.47040 * 60.00246 * 3 2 1 7 7 C 1.38659 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99943 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.35745 * 116.99750 * 185.06529 * 9 7 2 11 11 C 1.38936 * 120.04260 * 354.48113 * 10 9 7 12 12 C 1.38114 * 120.04013 * 179.97438 * 11 10 9 13 13 C 1.38235 * 120.12538 * 359.79847 * 12 11 10 14 14 C 1.38783 * 120.07982 * 0.45742 * 13 12 11 15 15 O 1.35890 * 120.02164 * 179.79306 * 14 13 12 16 16 S 1.52202 * 114.00317 * 269.72583 * 15 14 13 17 17 O 1.42100 * 104.27294 * 318.92935 * 16 15 14 18 18 O 1.42097 * 104.27780 * 191.07052 * 16 15 14 19 19 C 1.81401 * 104.44890 * 74.99621 * 16 15 14 20 20 C 1.52998 * 109.46961 * 179.97438 * 19 16 15 21 21 H 1.08998 * 109.82038 * 59.43470 * 20 19 16 22 22 C 1.54382 * 109.90370 * 180.36615 * 20 19 16 23 23 C 1.55311 * 102.24901 * 140.91502 * 22 20 19 24 24 C 1.54941 * 100.94285 * 325.86934 * 23 22 20 25 25 O 1.43230 * 109.83414 * 298.54993 * 20 19 16 26 26 C 1.38616 * 119.95654 * 359.51875 * 14 13 12 27 27 H 0.97007 * 119.99878 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.98149 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.93241 * 180.02562 * 12 11 10 30 30 H 1.07994 * 119.96123 * 180.25457 * 13 12 11 31 31 H 1.09000 * 109.47113 * 60.00335 * 19 16 15 32 32 H 1.08999 * 109.47239 * 300.00571 * 19 16 15 33 33 H 1.08999 * 110.85351 * 259.10828 * 22 20 19 34 34 H 1.09000 * 110.84632 * 22.52850 * 22 20 19 35 35 H 1.09000 * 111.12291 * 83.78987 * 23 22 20 36 36 H 1.09002 * 111.12367 * 207.90352 * 23 22 20 37 37 H 1.09004 * 110.30822 * 277.52984 * 24 23 22 38 38 H 1.08995 * 110.30973 * 155.36146 * 24 23 22 39 39 H 1.08003 * 120.06132 * 180.23227 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1057 11 6 3.4576 -3.4388 0.0927 12 6 4.2057 -4.5947 0.2013 13 6 3.5764 -5.8190 0.3274 14 6 2.1905 -5.8912 0.3357 15 8 1.5731 -7.0958 0.4555 16 16 1.2848 -7.7787 -0.8738 17 8 0.8412 -6.7263 -1.7193 18 8 0.4247 -8.8577 -0.5343 19 6 2.8983 -8.3994 -1.4232 20 6 2.7390 -9.1156 -2.7658 21 1 2.3378 -8.4251 -3.5077 22 6 4.1057 -9.6561 -3.2385 23 6 3.7225 -11.0316 -3.8495 24 6 2.5584 -11.4532 -2.9179 25 8 1.8583 -10.2353 -2.6178 26 6 1.4364 -4.7332 0.2274 27 1 -0.4850 0.8401 0.0004 28 1 3.9517 -2.4832 -0.0025 29 1 5.2843 -4.5415 0.1914 30 1 4.1639 -6.7208 0.4163 31 1 3.2900 -9.0977 -0.6836 32 1 3.5896 -7.5642 -1.5362 33 1 4.5405 -9.0031 -3.9952 34 1 4.7868 -9.7785 -2.3964 35 1 3.3820 -10.9229 -4.8792 36 1 4.5526 -11.7351 -3.7850 37 1 2.9485 -11.9005 -2.0036 38 1 1.8981 -12.1527 -3.4304 39 1 0.3577 -4.7870 0.2374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841567203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:46 Heat of formation + Delta-G solvation = -172.840952 kcal Electronic energy + Delta-G solvation = -25999.632866 eV Core-core repulsion = 22000.362638 eV Total energy + Delta-G solvation = -3999.270228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08844 -40.56739 -40.37196 -38.35944 -37.67750 -37.21847 -34.34837 -33.55477 -32.76047 -31.67243 -30.53259 -27.66309 -27.39018 -24.54898 -23.63491 -22.86451 -22.44740 -21.64656 -20.10525 -19.27382 -18.96677 -18.43812 -18.09833 -17.72519 -17.09247 -16.92578 -16.59586 -16.19617 -15.92600 -15.64947 -15.51126 -15.11611 -14.74558 -14.55472 -14.28113 -14.06496 -13.90054 -13.51432 -13.45693 -13.33859 -13.25540 -13.13777 -12.99943 -12.97128 -12.71982 -12.54290 -12.37288 -12.10707 -12.05286 -11.73791 -11.48985 -11.35685 -10.86925 -10.73416 -9.94155 -9.24934 -8.49909 -6.20387 -1.04984 0.18933 0.46762 1.05022 1.38157 1.46633 1.57583 2.16188 2.54104 2.59499 2.69474 2.94391 3.07153 3.28634 3.34043 3.53396 3.82223 3.86643 3.91489 4.07300 4.14387 4.15993 4.20953 4.33905 4.44505 4.47903 4.52739 4.76865 4.82950 4.88499 4.94972 5.00789 5.04334 5.09184 5.17206 5.25772 5.43911 5.52901 5.88614 5.94190 5.95799 6.93062 7.68960 8.73316 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.002929 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.863533 B = 9558.874775 C = 9881.006394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.026 4.026 3 Si 1.026 2.974 4 H -0.240 1.240 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.416 4.416 8 H 0.118 0.882 9 O -0.227 6.227 10 C 0.132 3.868 11 C -0.219 4.219 12 C -0.037 4.037 13 C -0.195 4.195 14 C 0.096 3.904 15 O -0.671 6.671 16 S 2.583 3.417 17 O -0.990 6.990 18 O -0.960 6.960 19 C -0.633 4.633 20 C 0.073 3.927 21 H 0.093 0.907 22 C -0.135 4.135 23 C -0.151 4.151 24 C 0.034 3.966 25 O -0.410 6.410 26 C -0.198 4.198 27 H 0.274 0.726 28 H 0.144 0.856 29 H 0.187 0.813 30 H 0.185 0.815 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.811 -19.337 -5.517 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.223 4.223 3 Si 0.844 3.156 4 H -0.162 1.162 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.491 4.491 8 H 0.135 0.865 9 O -0.133 6.133 10 C 0.080 3.920 11 C -0.239 4.239 12 C -0.055 4.055 13 C -0.216 4.216 14 C 0.055 3.945 15 O -0.630 6.630 16 S 2.684 3.316 17 O -0.989 6.989 18 O -0.959 6.959 19 C -0.764 4.764 20 C 0.014 3.986 21 H 0.111 0.889 22 C -0.174 4.174 23 C -0.188 4.188 24 C -0.042 4.042 25 O -0.331 6.331 26 C -0.220 4.220 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.204 0.796 30 H 0.202 0.798 31 H 0.193 0.807 32 H 0.197 0.803 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.357 -19.111 -5.247 25.697 hybrid contribution -0.425 0.621 0.035 0.753 sum 15.932 -18.490 -5.211 24.958 Atomic orbital electron populations 1.70226 1.08461 1.29033 1.48109 1.26777 0.96835 1.03224 0.95498 0.84435 0.78696 0.74153 0.78294 1.16248 1.19697 1.19679 1.22072 0.93093 0.80675 1.53268 0.86464 1.83977 1.36362 1.12741 1.80222 1.19438 0.92034 0.86832 0.93713 1.21660 0.91901 1.01830 1.08532 1.21255 1.01701 0.89096 0.93412 1.21420 0.89638 1.01719 1.08785 1.17797 0.91744 0.78760 1.06216 1.85619 1.79968 1.38620 1.58834 1.05607 0.79238 0.73820 0.72898 1.93640 1.81451 1.54775 1.69025 1.93555 1.64509 1.56368 1.81428 1.31029 1.21733 1.14119 1.09528 1.22649 0.94336 0.89364 0.92277 0.88930 1.23207 0.94066 0.97137 1.02968 1.23327 0.98776 0.96959 0.99762 1.23744 0.94723 0.86338 0.99379 1.88561 1.37538 1.16207 1.90762 1.20274 0.99934 0.91012 1.10792 0.91724 0.83826 0.79569 0.79756 0.80714 0.80282 0.87592 0.87681 0.89867 0.87020 0.90734 0.88747 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.54 13.67 21.61 0.30 -56.24 16 2 C -0.03 -1.41 5.49 84.84 0.47 -0.95 16 3 Si 1.03 40.99 29.55 68.60 2.03 43.02 16 4 H -0.24 -8.42 7.11 99.48 0.71 -7.71 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.42 -23.18 9.49 67.92 0.64 -22.54 16 8 H 0.12 5.66 5.20 -2.91 -0.02 5.64 16 9 O -0.23 -13.62 9.76 -22.68 -0.22 -13.84 16 10 C 0.13 6.45 6.64 22.56 0.15 6.60 16 11 C -0.22 -8.25 9.17 22.41 0.21 -8.04 16 12 C -0.04 -0.96 10.03 22.24 0.22 -0.73 16 13 C -0.20 -5.01 8.46 22.40 0.19 -4.82 16 14 C 0.10 3.51 4.79 22.49 0.11 3.62 16 15 O -0.67 -23.41 10.05 -61.40 -0.62 -24.02 16 16 S 2.58 85.65 4.98 -56.49 -0.28 85.37 16 17 O -0.99 -41.26 16.26 -118.57 -1.93 -43.18 16 18 O -0.96 -37.74 17.50 -117.38 -2.05 -39.79 16 19 C -0.63 -11.45 5.06 71.98 0.36 -11.09 16 20 C 0.07 1.35 3.56 31.06 0.11 1.46 16 21 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 22 C -0.14 -1.27 6.55 31.86 0.21 -1.06 16 23 C -0.15 -1.29 7.16 32.05 0.23 -1.06 16 24 C 0.03 0.48 7.78 72.65 0.56 1.05 16 25 O -0.41 -9.70 10.17 -144.93 -1.47 -11.17 16 26 C -0.20 -9.32 8.99 22.49 0.20 -9.12 16 27 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 28 H 0.14 5.18 5.63 -2.91 -0.02 5.16 16 29 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.19 2.54 7.52 -2.91 -0.02 2.52 16 31 H 0.18 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.18 2.20 6.62 -2.39 -0.02 2.19 16 33 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.58 7.85 -2.39 -0.02 0.56 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -88.34 340.68 0.49 -87.85 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.08 Total: 18.69 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 3.67 Total: -46.68 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.30 Total: -56.24 kcal Atomic # 8 Polarization: -125.71 SS G_CDS: -6.29 Total: -132.00 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 85.65 SS G_CDS: -0.28 Total: 85.37 kcal Total: -88.34 0.49 -87.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841567203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.994 kcal (2) G-P(sol) polarization free energy of solvation -88.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds