Wall clock time and date at job start Tue Mar 31 2020 15:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48508 * 109.46671 * 270.00059 * 3 2 1 5 5 H 1.48500 * 109.47021 * 29.99430 * 3 2 1 6 6 H 1.48497 * 109.47648 * 149.99862 * 3 2 1 7 7 C 1.38657 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00005 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99859 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00354 * 185.05662 * 9 7 2 11 11 C 1.38936 * 120.03599 * 354.46458 * 10 9 7 12 12 C 1.38112 * 120.04035 * 180.25739 * 11 10 9 13 13 C 1.38240 * 120.12086 * 359.44487 * 12 11 10 14 14 C 1.38779 * 120.08196 * 0.55462 * 13 12 11 15 15 O 1.35892 * 120.02585 * 179.70332 * 14 13 12 16 16 S 1.52203 * 114.00005 * 270.02758 * 15 14 13 17 17 O 1.42098 * 104.27736 * 191.06644 * 16 15 14 18 18 O 1.42099 * 104.27323 * 318.92099 * 16 15 14 19 19 C 1.81396 * 104.45041 * 74.99492 * 16 15 14 20 20 C 1.53003 * 109.46797 * 180.02562 * 19 16 15 21 21 H 1.09002 * 109.82732 * 305.56260 * 20 19 16 22 22 C 1.54380 * 109.82781 * 184.58765 * 20 19 16 23 23 C 1.55312 * 102.25279 * 219.12833 * 22 20 19 24 24 C 1.54950 * 100.93827 * 34.13508 * 23 22 20 25 25 O 1.43235 * 109.83239 * 66.45157 * 20 19 16 26 26 C 1.38619 * 119.95615 * 359.72331 * 14 13 12 27 27 H 0.97001 * 120.00125 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.98077 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.94019 * 179.72692 * 12 11 10 30 30 H 1.08003 * 119.95654 * 180.28412 * 13 12 11 31 31 H 1.09000 * 109.47271 * 299.99632 * 19 16 15 32 32 H 1.08998 * 109.47201 * 60.00568 * 19 16 15 33 33 H 1.08997 * 110.85066 * 337.31811 * 22 20 19 34 34 H 1.09000 * 110.85090 * 100.93945 * 22 20 19 35 35 H 1.08997 * 111.12420 * 276.21433 * 23 22 20 36 36 H 1.09002 * 111.16032 * 152.06638 * 23 22 20 37 37 H 1.08999 * 110.30509 * 204.63916 * 24 23 22 38 38 H 1.08995 * 110.30834 * 82.47149 * 24 23 22 39 39 H 1.08001 * 120.06160 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4002 5 1 1.4470 2.6527 0.6999 6 1 3.5472 1.4403 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0016 10 6 2.0701 -3.5045 0.1087 11 6 3.4578 -3.4386 0.0950 12 6 4.2059 -4.5950 0.1986 13 6 3.5767 -5.8191 0.3276 14 6 2.1908 -5.8908 0.3418 15 8 1.5734 -7.0953 0.4626 16 16 1.2856 -7.7794 -0.8662 17 8 0.4255 -8.8582 -0.5259 18 8 0.8420 -6.7279 -1.7128 19 6 2.8993 -8.4005 -1.4145 20 6 2.7406 -9.1169 -2.7571 21 1 1.9771 -9.8905 -2.6755 22 6 4.0857 -9.7482 -3.1760 23 6 4.1092 -9.4882 -4.7070 24 6 3.3869 -8.1195 -4.7840 25 8 2.3708 -8.1742 -3.7701 26 6 1.4366 -4.7329 0.2323 27 1 -0.4850 0.8400 0.0004 28 1 3.9518 -2.4831 -0.0012 29 1 5.2845 -4.5423 0.1834 30 1 4.1643 -6.7212 0.4130 31 1 3.5905 -7.5654 -1.5282 32 1 3.2908 -9.0982 -0.6742 33 1 4.9194 -9.2467 -2.6846 34 1 4.0952 -10.8173 -2.9639 35 1 3.5535 -10.2565 -5.2445 36 1 5.1315 -9.4143 -5.0779 37 1 2.9343 -7.9854 -5.7665 38 1 4.0866 -7.3103 -4.5753 39 1 0.3580 -4.7867 0.2427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841567204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:52 Heat of formation + Delta-G solvation = -146.023261 kcal Electronic energy + Delta-G solvation = -26219.522596 eV Core-core repulsion = 22221.415270 eV Total energy + Delta-G solvation = -3998.107326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.60478 -39.77870 -38.67917 -36.95485 -36.05381 -35.78627 -32.73712 -32.45350 -32.02996 -30.09597 -28.95626 -26.80684 -25.54339 -23.01983 -22.35165 -22.07551 -21.49287 -20.18785 -18.51962 -17.76812 -17.58958 -17.26593 -16.89777 -16.26380 -16.23113 -15.45379 -15.01975 -14.85656 -14.62058 -14.33159 -13.90513 -13.81707 -13.66200 -13.48251 -13.09534 -12.66664 -12.60751 -12.35718 -12.23192 -12.09638 -11.89892 -11.78931 -11.77134 -11.51161 -11.38243 -11.36915 -11.22074 -10.97626 -10.85346 -10.55480 -10.45553 -9.90473 -9.57667 -9.00143 -8.40877 -7.54577 -6.58504 -4.17796 0.24873 1.72411 2.00724 2.44454 3.06340 3.06558 3.12276 3.42551 3.74263 3.84326 4.05237 4.14721 4.23321 4.32799 4.53042 4.64274 4.73164 4.91548 4.95290 5.02860 5.10416 5.25365 5.26505 5.34169 5.43919 5.45496 5.55609 5.61224 5.62712 5.78239 5.81255 6.01771 6.37695 6.55642 6.65234 6.68849 6.78541 7.05502 7.18871 7.46573 7.83666 8.84749 9.49871 10.58171 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.003331 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.650559 B = 8404.081135 C = 8893.788187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.396 4.396 8 H 0.097 0.903 9 O -0.162 6.162 10 C 0.165 3.835 11 C -0.221 4.221 12 C -0.055 4.055 13 C -0.233 4.233 14 C 0.101 3.899 15 O -0.665 6.665 16 S 2.599 3.401 17 O -0.942 6.942 18 O -0.924 6.924 19 C -0.672 4.672 20 C 0.092 3.908 21 H 0.096 0.904 22 C -0.143 4.143 23 C -0.158 4.158 24 C 0.048 3.952 25 O -0.368 6.368 26 C -0.155 4.155 27 H 0.274 0.726 28 H 0.138 0.862 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.787 -16.191 -5.647 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.471 4.471 8 H 0.114 0.886 9 O -0.064 6.064 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.073 4.073 13 C -0.254 4.254 14 C 0.060 3.940 15 O -0.624 6.624 16 S 2.693 3.307 17 O -0.940 6.940 18 O -0.923 6.923 19 C -0.797 4.797 20 C 0.032 3.968 21 H 0.114 0.886 22 C -0.181 4.181 23 C -0.196 4.196 24 C -0.028 4.028 25 O -0.287 6.287 26 C -0.177 4.177 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.380 -15.812 -5.465 19.688 hybrid contribution 1.327 0.302 -0.001 1.361 sum 11.706 -15.509 -5.466 20.185 Atomic orbital electron populations 1.70046 1.06088 1.28185 1.44088 1.25382 0.95909 0.99068 0.96086 0.85644 0.78896 0.79612 0.78874 1.19671 1.20106 1.19026 1.21415 0.91986 0.80459 1.53264 0.88588 1.83992 1.34340 1.11389 1.76670 1.18924 0.90064 0.87588 0.92520 1.21342 0.93591 0.99510 1.09690 1.20552 0.98958 0.91101 0.96720 1.20605 0.91348 0.99098 1.14351 1.17503 0.90317 0.79401 1.06758 1.85637 1.79335 1.39319 1.58159 1.05406 0.76660 0.75060 0.73544 1.93592 1.61741 1.56869 1.81840 1.93701 1.78607 1.52219 1.67763 1.31312 1.27619 1.13341 1.07458 1.22304 0.98470 0.90435 0.85541 0.88606 1.23150 0.96760 1.02167 0.96035 1.23320 1.02124 0.98105 0.96025 1.23465 0.90449 0.96669 0.92223 1.88605 1.44069 1.61790 1.34236 1.20168 1.00661 0.89265 1.07630 0.91616 0.84484 0.85880 0.86122 0.83579 0.83894 0.89719 0.89442 0.90079 0.89562 0.89094 0.91574 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.34 13.67 55.48 0.76 -23.58 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 3 Si 0.95 19.60 29.55 -169.99 -5.02 14.58 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.40 -10.59 9.49 30.89 0.29 -10.30 16 8 H 0.10 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.16 -4.53 9.76 0.06 0.00 -4.53 16 10 C 0.16 3.91 6.64 -39.13 -0.26 3.65 16 11 C -0.22 -4.44 9.16 -39.37 -0.36 -4.80 16 12 C -0.05 -0.89 10.03 -39.63 -0.40 -1.29 16 13 C -0.23 -3.74 8.46 -39.38 -0.33 -4.07 16 14 C 0.10 1.94 4.80 -39.24 -0.19 1.75 16 15 O -0.66 -11.76 10.05 -51.72 -0.52 -12.28 16 16 S 2.60 43.15 5.04 -107.50 -0.54 42.61 16 17 O -0.94 -17.27 18.09 -67.04 -1.21 -18.49 16 18 O -0.92 -18.86 15.87 -67.51 -1.07 -19.93 16 19 C -0.67 -7.60 5.02 37.16 0.19 -7.41 16 20 C 0.09 1.00 3.51 -26.01 -0.09 0.91 16 21 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.14 -1.05 6.54 -24.78 -0.16 -1.21 16 23 C -0.16 -1.08 7.16 -24.48 -0.18 -1.26 16 24 C 0.05 0.47 7.78 38.19 0.30 0.76 16 25 O -0.37 -4.97 10.47 -35.29 -0.37 -5.34 16 26 C -0.16 -3.48 8.99 -39.25 -0.35 -3.83 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.14 2.65 5.63 -52.49 -0.30 2.35 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.45 7.49 -52.48 -0.39 1.06 16 31 H 0.15 1.57 6.60 -51.92 -0.34 1.23 16 32 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -34.68 341.08 -9.13 -43.81 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.65 Total: 4.11 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -1.64 Total: -26.10 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.76 Total: -23.58 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -3.17 Total: -60.57 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 43.15 SS G_CDS: -0.54 Total: 42.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.68 -9.13 -43.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841567204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.212 kcal (2) G-P(sol) polarization free energy of solvation -34.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds