Wall clock time and date at job start Tue Mar 31 2020 15:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48508 * 109.46671 * 270.00059 * 3 2 1 5 5 H 1.48500 * 109.47021 * 29.99430 * 3 2 1 6 6 H 1.48497 * 109.47648 * 149.99862 * 3 2 1 7 7 C 1.38657 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00005 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99859 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00354 * 185.05662 * 9 7 2 11 11 C 1.38936 * 120.03599 * 354.46458 * 10 9 7 12 12 C 1.38112 * 120.04035 * 180.25739 * 11 10 9 13 13 C 1.38240 * 120.12086 * 359.44487 * 12 11 10 14 14 C 1.38779 * 120.08196 * 0.55462 * 13 12 11 15 15 O 1.35892 * 120.02585 * 179.70332 * 14 13 12 16 16 S 1.52203 * 114.00005 * 270.02758 * 15 14 13 17 17 O 1.42098 * 104.27736 * 191.06644 * 16 15 14 18 18 O 1.42099 * 104.27323 * 318.92099 * 16 15 14 19 19 C 1.81396 * 104.45041 * 74.99492 * 16 15 14 20 20 C 1.53003 * 109.46797 * 180.02562 * 19 16 15 21 21 H 1.09002 * 109.82732 * 305.56260 * 20 19 16 22 22 C 1.54380 * 109.82781 * 184.58765 * 20 19 16 23 23 C 1.55312 * 102.25279 * 219.12833 * 22 20 19 24 24 C 1.54950 * 100.93827 * 34.13508 * 23 22 20 25 25 O 1.43235 * 109.83239 * 66.45157 * 20 19 16 26 26 C 1.38619 * 119.95615 * 359.72331 * 14 13 12 27 27 H 0.97001 * 120.00125 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.98077 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.94019 * 179.72692 * 12 11 10 30 30 H 1.08003 * 119.95654 * 180.28412 * 13 12 11 31 31 H 1.09000 * 109.47271 * 299.99632 * 19 16 15 32 32 H 1.08998 * 109.47201 * 60.00568 * 19 16 15 33 33 H 1.08997 * 110.85066 * 337.31811 * 22 20 19 34 34 H 1.09000 * 110.85090 * 100.93945 * 22 20 19 35 35 H 1.08997 * 111.12420 * 276.21433 * 23 22 20 36 36 H 1.09002 * 111.16032 * 152.06638 * 23 22 20 37 37 H 1.08999 * 110.30509 * 204.63916 * 24 23 22 38 38 H 1.08995 * 110.30834 * 82.47149 * 24 23 22 39 39 H 1.08001 * 120.06160 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4002 5 1 1.4470 2.6527 0.6999 6 1 3.5472 1.4403 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0016 10 6 2.0701 -3.5045 0.1087 11 6 3.4578 -3.4386 0.0950 12 6 4.2059 -4.5950 0.1986 13 6 3.5767 -5.8191 0.3276 14 6 2.1908 -5.8908 0.3418 15 8 1.5734 -7.0953 0.4626 16 16 1.2856 -7.7794 -0.8662 17 8 0.4255 -8.8582 -0.5259 18 8 0.8420 -6.7279 -1.7128 19 6 2.8993 -8.4005 -1.4145 20 6 2.7406 -9.1169 -2.7571 21 1 1.9771 -9.8905 -2.6755 22 6 4.0857 -9.7482 -3.1760 23 6 4.1092 -9.4882 -4.7070 24 6 3.3869 -8.1195 -4.7840 25 8 2.3708 -8.1742 -3.7701 26 6 1.4366 -4.7329 0.2323 27 1 -0.4850 0.8400 0.0004 28 1 3.9518 -2.4831 -0.0012 29 1 5.2845 -4.5423 0.1834 30 1 4.1643 -6.7212 0.4130 31 1 3.5905 -7.5654 -1.5282 32 1 3.2908 -9.0982 -0.6742 33 1 4.9194 -9.2467 -2.6846 34 1 4.0952 -10.8173 -2.9639 35 1 3.5535 -10.2565 -5.2445 36 1 5.1315 -9.4143 -5.0779 37 1 2.9343 -7.9854 -5.7665 38 1 4.0866 -7.3103 -4.5753 39 1 0.3580 -4.7867 0.2427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841567204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:50 Heat of formation + Delta-G solvation = -172.785931 kcal Electronic energy + Delta-G solvation = -26220.683112 eV Core-core repulsion = 22221.415270 eV Total energy + Delta-G solvation = -3999.267842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.08432 -40.54734 -40.37464 -38.37112 -37.67250 -37.21956 -34.35095 -33.54645 -32.74774 -31.67710 -30.53861 -27.66048 -27.38991 -24.55749 -23.64599 -22.85597 -22.43682 -21.64369 -20.06468 -19.26865 -19.05799 -18.42413 -18.07824 -17.71169 -17.09966 -16.89577 -16.56970 -16.23195 -15.93133 -15.65102 -15.52928 -15.14512 -14.64302 -14.60223 -14.28687 -14.07691 -13.90870 -13.53542 -13.47812 -13.32354 -13.22344 -13.11933 -13.00228 -12.96291 -12.69767 -12.52798 -12.37314 -12.10491 -12.09852 -11.72841 -11.47902 -11.36488 -10.85703 -10.71880 -9.94149 -9.24929 -8.49989 -6.20688 -1.05741 0.19285 0.46686 1.06404 1.37486 1.47247 1.56200 2.16191 2.53347 2.59797 2.69840 2.95430 3.07642 3.26082 3.35158 3.58015 3.76095 3.86487 3.90580 4.11876 4.13932 4.16114 4.20646 4.30878 4.45078 4.49158 4.52135 4.76757 4.83288 4.90252 4.94726 5.00043 5.04117 5.08371 5.16270 5.26711 5.42966 5.52283 5.91894 5.93873 5.95373 6.92657 7.68572 8.73033 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.003331 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.650559 B = 8404.081135 C = 8893.788187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.026 2.974 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.243 1.243 7 C -0.418 4.418 8 H 0.117 0.883 9 O -0.227 6.227 10 C 0.131 3.869 11 C -0.220 4.220 12 C -0.039 4.039 13 C -0.195 4.195 14 C 0.099 3.901 15 O -0.671 6.671 16 S 2.581 3.419 17 O -0.972 6.972 18 O -0.979 6.979 19 C -0.635 4.635 20 C 0.073 3.927 21 H 0.098 0.902 22 C -0.134 4.134 23 C -0.149 4.149 24 C 0.032 3.968 25 O -0.409 6.409 26 C -0.197 4.197 27 H 0.274 0.726 28 H 0.144 0.856 29 H 0.186 0.814 30 H 0.185 0.815 31 H 0.163 0.837 32 H 0.194 0.806 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.847 -18.925 -5.743 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.223 4.223 3 Si 0.844 3.156 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.166 1.166 7 C -0.493 4.493 8 H 0.134 0.866 9 O -0.133 6.133 10 C 0.079 3.921 11 C -0.240 4.240 12 C -0.057 4.057 13 C -0.216 4.216 14 C 0.058 3.942 15 O -0.630 6.630 16 S 2.682 3.318 17 O -0.970 6.970 18 O -0.977 6.977 19 C -0.766 4.766 20 C 0.013 3.987 21 H 0.116 0.884 22 C -0.172 4.172 23 C -0.187 4.187 24 C -0.044 4.044 25 O -0.329 6.329 26 C -0.219 4.219 27 H 0.083 0.917 28 H 0.161 0.839 29 H 0.203 0.797 30 H 0.202 0.798 31 H 0.181 0.819 32 H 0.211 0.789 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.415 -18.582 -5.532 25.403 hybrid contribution -0.391 0.668 -0.015 0.775 sum 16.023 -17.913 -5.547 24.666 Atomic orbital electron populations 1.70221 1.08447 1.29104 1.48020 1.26781 0.96842 1.03211 0.95445 0.84493 0.77978 0.73807 0.79313 1.18778 1.20055 1.16629 1.22030 0.93079 0.80731 1.53458 0.86566 1.83975 1.36324 1.12730 1.80254 1.19442 0.92022 0.86885 0.93722 1.21646 0.91951 1.01777 1.08626 1.21242 1.01651 0.89193 0.93568 1.21409 0.89735 1.01664 1.08769 1.17740 0.91655 0.78767 1.06032 1.85592 1.79956 1.38554 1.58881 1.05674 0.79226 0.74210 0.72676 1.93547 1.64711 1.56727 1.82001 1.93653 1.81248 1.54339 1.68484 1.31071 1.21596 1.14896 1.09039 1.22689 1.01120 0.90251 0.84604 0.88417 1.23213 0.94572 1.03508 0.95949 1.23322 1.03045 0.96116 0.96211 1.23723 0.90255 0.98819 0.91562 1.88598 1.46054 1.62659 1.35637 1.20268 0.99937 0.91021 1.10688 0.91708 0.83883 0.79699 0.79782 0.81875 0.78887 0.87887 0.86984 0.89599 0.87206 0.89111 0.91366 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.96 13.67 21.61 0.30 -56.66 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 3 Si 1.03 41.40 29.55 68.60 2.03 43.43 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.24 -8.75 7.11 99.48 0.71 -8.05 16 7 C -0.42 -23.62 9.49 67.92 0.64 -22.98 16 8 H 0.12 5.70 5.20 -2.91 -0.02 5.69 16 9 O -0.23 -13.80 9.76 -22.69 -0.22 -14.02 16 10 C 0.13 6.55 6.64 22.56 0.15 6.70 16 11 C -0.22 -8.52 9.16 22.41 0.21 -8.31 16 12 C -0.04 -1.05 10.03 22.24 0.22 -0.83 16 13 C -0.20 -5.19 8.46 22.40 0.19 -5.01 16 14 C 0.10 3.69 4.80 22.49 0.11 3.80 16 15 O -0.67 -23.24 10.05 -61.42 -0.62 -23.86 16 16 S 2.58 84.69 5.04 -56.49 -0.28 84.41 16 17 O -0.97 -36.05 18.09 -118.57 -2.15 -38.19 16 18 O -0.98 -42.16 15.87 -118.12 -1.87 -44.04 16 19 C -0.63 -11.32 5.02 71.98 0.36 -10.96 16 20 C 0.07 1.32 3.51 31.06 0.11 1.43 16 21 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 22 C -0.13 -1.20 6.54 31.86 0.21 -1.00 16 23 C -0.15 -1.41 7.16 32.06 0.23 -1.18 16 24 C 0.03 0.55 7.78 72.65 0.57 1.11 16 25 O -0.41 -10.50 10.47 -148.92 -1.56 -12.06 16 26 C -0.20 -9.43 8.99 22.49 0.20 -9.23 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.14 5.30 5.63 -2.91 -0.02 5.29 16 29 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.18 2.67 7.49 -2.91 -0.02 2.65 16 31 H 0.16 2.46 6.60 -2.39 -0.02 2.45 16 32 H 0.19 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 0.59 7.85 -2.39 -0.02 0.57 16 34 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 5.33 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -89.30 341.08 0.36 -88.94 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 1.08 Total: 19.42 kcal Atomic # 6 Polarization: -51.03 SS G_CDS: 3.66 Total: -47.37 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.30 Total: -56.66 kcal Atomic # 8 Polarization: -125.75 SS G_CDS: -6.42 Total: -132.17 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 84.69 SS G_CDS: -0.28 Total: 84.41 kcal Total: -89.30 0.36 -88.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841567204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.846 kcal (2) G-P(sol) polarization free energy of solvation -89.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds