Wall clock time and date at job start Tue Mar 31 2020 15:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50711 * 119.99517 * 2 1 4 4 O 1.42900 * 109.46714 * 135.00235 * 3 2 1 5 5 C 1.42903 * 113.99677 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.46931 * 179.97438 * 5 4 3 7 7 S 1.81398 * 109.47119 * 179.97438 * 6 5 4 8 8 C 1.81395 * 103.00274 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47611 * 179.97438 * 8 7 6 10 10 C 1.38112 * 120.03212 * 269.72684 * 9 8 7 11 11 C 1.38387 * 120.06077 * 179.78587 * 10 9 8 12 12 Cl 1.73596 * 119.94521 * 180.22851 * 11 10 9 13 13 C 1.38436 * 120.10870 * 0.46713 * 11 10 9 14 14 C 1.38074 * 120.05522 * 359.78266 * 13 11 10 15 15 C 1.38858 * 120.03088 * 89.99797 * 9 8 7 16 16 O 1.35769 * 120.05160 * 359.97438 * 15 9 8 17 17 C 1.34819 * 116.99789 * 174.37726 * 16 15 9 18 18 H 1.08003 * 120.00519 * 5.06487 * 17 16 15 19 19 C 1.38653 * 120.00174 * 185.06626 * 17 16 15 20 20 N 1.31557 * 120.00018 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00239 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47229 * 90.00172 * 21 19 17 23 23 H 1.48502 * 109.47087 * 210.00090 * 21 19 17 24 24 H 1.48503 * 109.47245 * 329.99916 * 21 19 17 25 25 H 1.07995 * 120.00394 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99295 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00394 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47091 * 14.99999 * 3 2 1 29 29 H 1.08993 * 109.46676 * 254.99823 * 3 2 1 30 30 H 1.09000 * 109.46810 * 59.99533 * 5 4 3 31 31 H 1.08999 * 109.46811 * 299.99582 * 5 4 3 32 32 H 1.08997 * 109.47680 * 59.99822 * 6 5 4 33 33 H 1.08999 * 109.47545 * 300.00133 * 6 5 4 34 34 H 1.09005 * 109.47440 * 299.99975 * 8 7 6 35 35 H 1.09005 * 109.47305 * 59.99681 * 8 7 6 36 36 H 1.08005 * 119.96681 * 0.02562 * 10 9 8 37 37 H 1.07994 * 119.97023 * 179.76771 * 13 11 10 38 38 H 1.07998 * 120.02590 * 179.97438 * 14 13 11 39 39 H 0.96997 * 120.00411 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9076 2.4355 1.0329 6 6 5.0097 2.2547 2.0785 7 16 6.0015 3.7702 2.1798 8 6 7.2339 3.3673 3.4484 9 6 8.1501 4.5465 3.6513 10 6 9.3051 4.6614 2.9029 11 6 10.1445 5.7463 3.0856 12 17 11.5926 5.8907 2.1391 13 6 9.8340 6.7141 4.0255 14 6 8.6831 6.6013 4.7799 15 6 7.8366 5.5158 4.5949 16 8 6.7042 5.4027 5.3355 17 6 6.5183 6.3130 6.3123 18 1 7.2106 7.1344 6.4240 19 6 5.4382 6.1949 7.1737 20 7 4.5951 5.1941 7.0381 21 14 5.1802 7.4566 8.5267 22 1 4.3336 8.5644 8.0156 23 1 4.5070 6.8120 9.6828 24 1 6.4948 7.9965 8.9575 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4754 1.4869 -0.9926 30 1 3.2675 3.2696 1.3205 31 1 4.3578 2.6410 0.0617 32 1 5.6498 1.4206 1.7913 33 1 4.5592 2.0493 3.0495 34 1 6.7281 3.1343 4.3854 35 1 7.8181 2.5050 3.1267 36 1 9.5514 3.9057 2.1716 37 1 10.4926 7.5579 4.1689 38 1 8.4414 7.3563 5.5133 39 1 3.8397 5.1112 7.6408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842174088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:44 Heat of formation + Delta-G solvation = -43.193661 kcal Electronic energy + Delta-G solvation = -21904.985306 eV Core-core repulsion = 18352.046171 eV Total energy + Delta-G solvation = -3552.939135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.37145 -38.23742 -36.89403 -35.62369 -34.25914 -32.55018 -32.12881 -31.09552 -29.02741 -26.63858 -26.03085 -25.49392 -22.99960 -21.84745 -20.91343 -20.14504 -18.18591 -17.16961 -17.02121 -16.36761 -15.76534 -15.43818 -15.27079 -15.14355 -14.60722 -14.33199 -14.13031 -13.79099 -13.49133 -13.19075 -13.11540 -12.91579 -12.44251 -12.42435 -12.20237 -11.88595 -11.70816 -11.60411 -11.20881 -11.17711 -11.14009 -11.00971 -10.55356 -10.46403 -10.38670 -10.01012 -9.69396 -9.51582 -9.49619 -8.94253 -8.30331 -7.31653 -7.17007 -6.60583 -4.17968 1.45786 1.90895 2.02119 2.30444 2.77678 3.03436 3.05714 3.06412 3.11046 3.83632 3.84199 4.33365 4.71704 4.88046 4.92418 4.97989 5.02600 5.09413 5.17090 5.22431 5.32032 5.41574 5.42506 5.57659 5.59328 5.73993 5.78783 5.90686 6.02015 6.10298 6.30119 6.35023 6.39823 6.55163 6.78870 6.83920 7.04344 7.06594 7.16723 7.46287 7.81838 8.83776 9.47873 10.55485 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.007622 B = 0.003493 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.521240 B = 8014.370006 C =11444.918999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C 0.088 3.912 4 O -0.384 6.384 5 C 0.083 3.917 6 C -0.096 4.096 7 S -0.243 6.243 8 C -0.013 4.013 9 C -0.148 4.148 10 C -0.041 4.041 11 C -0.128 4.128 12 Cl -0.104 7.104 13 C -0.052 4.052 14 C -0.224 4.224 15 C 0.170 3.830 16 O -0.153 6.153 17 C -0.395 4.395 18 H 0.095 0.905 19 C 0.045 3.955 20 N -0.850 5.850 21 Si 0.941 3.059 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.266 1.266 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 -5.069 -10.042 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.168 4.168 3 C 0.012 3.988 4 O -0.304 6.304 5 C 0.005 3.995 6 C -0.244 4.244 7 S -0.014 6.014 8 C -0.160 4.160 9 C -0.151 4.151 10 C -0.062 4.062 11 C -0.155 4.155 12 Cl -0.076 7.076 13 C -0.072 4.072 14 C -0.244 4.244 15 C 0.112 3.888 16 O -0.054 6.054 17 C -0.471 4.471 18 H 0.112 0.888 19 C -0.161 4.161 20 N -0.482 5.482 21 Si 0.765 3.235 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.190 1.190 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.134 0.866 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.758 -4.582 -10.467 11.451 hybrid contribution 0.110 -0.183 1.152 1.172 sum -0.648 -4.765 -9.315 10.483 Atomic orbital electron populations 1.23844 0.95578 1.02281 1.00207 1.22760 0.95650 0.98227 1.00122 1.21532 0.88977 0.95878 0.92443 1.87888 1.44616 1.37240 1.60652 1.22086 0.92083 0.87274 0.98023 1.23167 0.99063 0.99363 1.02792 1.86919 1.38252 1.23021 1.53246 1.21890 0.96103 0.97871 1.00145 1.18081 0.97200 0.97718 1.02110 1.20385 0.92352 0.96123 0.97294 1.20221 0.92121 1.00795 1.02400 1.98280 1.38492 1.98088 1.72751 1.20673 0.96183 0.96866 0.93485 1.21087 0.96743 1.01278 1.05275 1.19129 0.86600 0.92129 0.90905 1.83987 1.31555 1.49689 1.40143 1.21394 1.12347 1.05682 1.07647 0.88797 1.25309 0.94937 0.97799 0.98093 1.70029 1.12994 1.28587 1.36627 0.85703 0.79144 0.79332 0.79273 1.19690 1.20130 1.19050 0.88362 0.87827 0.86605 0.92610 0.92313 0.92116 0.92488 0.89846 0.89131 0.88330 0.90239 0.85791 0.86263 0.84452 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 14.31 29.01 0.42 -1.07 16 2 C -0.15 -1.44 9.89 -36.02 -0.36 -1.79 16 3 C 0.09 0.94 6.35 36.01 0.23 1.17 16 4 O -0.38 -5.23 10.33 -35.23 -0.36 -5.60 16 5 C 0.08 1.12 5.95 37.15 0.22 1.34 16 6 C -0.10 -1.44 6.31 37.15 0.23 -1.20 16 7 S -0.24 -4.35 21.72 -107.50 -2.33 -6.69 16 8 C -0.01 -0.24 5.85 36.00 0.21 -0.03 16 9 C -0.15 -2.91 5.16 -104.44 -0.54 -3.45 16 10 C -0.04 -0.71 9.48 -39.57 -0.37 -1.09 16 11 C -0.13 -2.23 6.32 -39.45 -0.25 -2.48 16 12 Cl -0.10 -1.58 28.95 -51.86 -1.50 -3.08 16 13 C -0.05 -0.93 9.82 -39.57 -0.39 -1.32 16 14 C -0.22 -4.56 9.17 -39.40 -0.36 -4.92 16 15 C 0.17 3.82 6.62 -39.11 -0.26 3.56 16 16 O -0.15 -3.99 8.81 0.02 0.00 -3.99 16 17 C -0.39 -10.27 9.49 30.89 0.29 -9.98 16 18 H 0.09 2.25 5.20 -52.48 -0.27 1.98 16 19 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 20 N -0.85 -23.41 13.67 55.48 0.76 -22.65 16 21 Si 0.94 19.45 29.55 -169.99 -5.02 14.42 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H 0.10 0.73 7.90 -52.49 -0.41 0.32 16 26 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 27 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 34 H 0.10 2.02 7.54 -51.92 -0.39 1.63 16 35 H 0.08 1.22 8.08 -51.92 -0.42 0.80 16 36 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.14 2.75 5.64 -52.49 -0.30 2.45 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -28.09 368.02 -9.08 -37.17 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.14 Total: 5.08 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.02 Total: -20.21 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.76 Total: -22.65 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.36 Total: -9.59 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -2.33 Total: -6.69 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -1.50 Total: -3.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.09 -9.08 -37.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842174088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.026 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds