Wall clock time and date at job start Tue Mar 31 2020 15:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50711 * 119.99517 * 2 1 4 4 O 1.42900 * 109.46714 * 135.00235 * 3 2 1 5 5 C 1.42903 * 113.99677 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.46931 * 179.97438 * 5 4 3 7 7 S 1.81398 * 109.47119 * 179.97438 * 6 5 4 8 8 C 1.81395 * 103.00274 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47611 * 179.97438 * 8 7 6 10 10 C 1.38112 * 120.03212 * 269.72684 * 9 8 7 11 11 C 1.38387 * 120.06077 * 179.78587 * 10 9 8 12 12 Cl 1.73596 * 119.94521 * 180.22851 * 11 10 9 13 13 C 1.38436 * 120.10870 * 0.46713 * 11 10 9 14 14 C 1.38074 * 120.05522 * 359.78266 * 13 11 10 15 15 C 1.38858 * 120.03088 * 89.99797 * 9 8 7 16 16 O 1.35769 * 120.05160 * 359.97438 * 15 9 8 17 17 C 1.34819 * 116.99789 * 174.37726 * 16 15 9 18 18 H 1.08003 * 120.00519 * 5.06487 * 17 16 15 19 19 C 1.38653 * 120.00174 * 185.06626 * 17 16 15 20 20 N 1.31557 * 120.00018 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00239 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47229 * 90.00172 * 21 19 17 23 23 H 1.48502 * 109.47087 * 210.00090 * 21 19 17 24 24 H 1.48503 * 109.47245 * 329.99916 * 21 19 17 25 25 H 1.07995 * 120.00394 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99295 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00394 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47091 * 14.99999 * 3 2 1 29 29 H 1.08993 * 109.46676 * 254.99823 * 3 2 1 30 30 H 1.09000 * 109.46810 * 59.99533 * 5 4 3 31 31 H 1.08999 * 109.46811 * 299.99582 * 5 4 3 32 32 H 1.08997 * 109.47680 * 59.99822 * 6 5 4 33 33 H 1.08999 * 109.47545 * 300.00133 * 6 5 4 34 34 H 1.09005 * 109.47440 * 299.99975 * 8 7 6 35 35 H 1.09005 * 109.47305 * 59.99681 * 8 7 6 36 36 H 1.08005 * 119.96681 * 0.02562 * 10 9 8 37 37 H 1.07994 * 119.97023 * 179.76771 * 13 11 10 38 38 H 1.07998 * 120.02590 * 179.97438 * 14 13 11 39 39 H 0.96997 * 120.00411 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9076 2.4355 1.0329 6 6 5.0097 2.2547 2.0785 7 16 6.0015 3.7702 2.1798 8 6 7.2339 3.3673 3.4484 9 6 8.1501 4.5465 3.6513 10 6 9.3051 4.6614 2.9029 11 6 10.1445 5.7463 3.0856 12 17 11.5926 5.8907 2.1391 13 6 9.8340 6.7141 4.0255 14 6 8.6831 6.6013 4.7799 15 6 7.8366 5.5158 4.5949 16 8 6.7042 5.4027 5.3355 17 6 6.5183 6.3130 6.3123 18 1 7.2106 7.1344 6.4240 19 6 5.4382 6.1949 7.1737 20 7 4.5951 5.1941 7.0381 21 14 5.1802 7.4566 8.5267 22 1 4.3336 8.5644 8.0156 23 1 4.5070 6.8120 9.6828 24 1 6.4948 7.9965 8.9575 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4754 1.4869 -0.9926 30 1 3.2675 3.2696 1.3205 31 1 4.3578 2.6410 0.0617 32 1 5.6498 1.4206 1.7913 33 1 4.5592 2.0493 3.0495 34 1 6.7281 3.1343 4.3854 35 1 7.8181 2.5050 3.1267 36 1 9.5514 3.9057 2.1716 37 1 10.4926 7.5579 4.1689 38 1 8.4414 7.3563 5.5133 39 1 3.8397 5.1112 7.6408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842174088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:43 Heat of formation + Delta-G solvation = -56.736523 kcal Electronic energy + Delta-G solvation = -21905.572568 eV Core-core repulsion = 18352.046171 eV Total energy + Delta-G solvation = -3553.526397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00355 -39.22180 -38.49783 -37.04867 -35.04191 -34.33759 -33.71482 -32.20130 -30.59697 -28.17587 -27.31424 -26.87286 -24.17001 -23.46078 -22.42405 -20.87183 -19.93228 -18.82662 -18.06778 -17.37118 -17.21066 -16.83413 -16.72904 -16.32649 -16.22560 -15.74743 -15.34737 -15.30967 -14.81431 -14.61459 -14.43967 -14.09868 -13.88010 -13.78675 -13.62186 -13.40173 -12.85032 -12.81024 -12.77662 -12.56192 -12.51108 -12.13433 -11.94280 -11.86565 -11.81369 -11.26212 -11.04363 -10.92768 -10.76348 -10.29039 -9.80494 -8.94014 -8.61129 -8.47737 -6.13896 0.01259 0.46498 0.84347 1.25514 1.34390 1.37601 1.44789 1.53183 1.62839 2.16278 2.72031 2.88475 3.11512 3.37364 3.71209 3.81378 3.82733 3.90855 4.12688 4.15182 4.16916 4.29087 4.31971 4.38559 4.49708 4.51639 4.55391 4.65656 4.70288 4.81715 4.96779 5.02649 5.09259 5.31770 5.40617 5.53316 5.62830 5.69680 5.89209 5.97240 6.11130 6.96385 7.70656 8.72970 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.007622 B = 0.003493 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.521240 B = 8014.370006 C =11444.918999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.172 4.172 3 C 0.082 3.918 4 O -0.401 6.401 5 C 0.088 3.912 6 C -0.083 4.083 7 S -0.271 6.271 8 C -0.008 4.008 9 C -0.150 4.150 10 C -0.039 4.039 11 C -0.116 4.116 12 Cl -0.073 7.073 13 C -0.049 4.049 14 C -0.233 4.233 15 C 0.140 3.860 16 O -0.199 6.199 17 C -0.415 4.415 18 H 0.104 0.896 19 C -0.012 4.012 20 N -0.907 5.907 21 Si 1.012 2.988 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.252 1.252 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -4.828 -11.598 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C 0.006 3.994 4 O -0.321 6.321 5 C 0.011 3.989 6 C -0.231 4.231 7 S -0.042 6.042 8 C -0.155 4.155 9 C -0.153 4.153 10 C -0.059 4.059 11 C -0.143 4.143 12 Cl -0.044 7.044 13 C -0.068 4.068 14 C -0.253 4.253 15 C 0.085 3.915 16 O -0.103 6.103 17 C -0.491 4.491 18 H 0.122 0.878 19 C -0.212 4.212 20 N -0.543 5.543 21 Si 0.832 3.168 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.176 1.176 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.152 0.848 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.888 -4.329 -12.061 12.845 hybrid contribution -0.147 -0.333 1.343 1.392 sum 0.741 -4.662 -10.718 11.711 Atomic orbital electron populations 1.24078 0.95167 1.03436 0.97926 1.22792 0.96223 0.97802 1.02236 1.21745 0.88439 0.96747 0.92468 1.87856 1.45445 1.36984 1.61846 1.21978 0.91613 0.87184 0.98125 1.23134 0.99316 0.98084 1.02546 1.86882 1.39260 1.25733 1.52317 1.21837 0.96133 0.98591 0.98931 1.18388 0.98027 0.97412 1.01439 1.20682 0.91235 0.96869 0.97133 1.20459 0.92603 0.99844 1.01371 1.98302 1.36417 1.97966 1.71760 1.20952 0.95450 0.97806 0.92636 1.21206 0.97482 1.00725 1.05837 1.19683 0.86683 0.93650 0.91447 1.83984 1.33801 1.50840 1.41682 1.21837 1.12892 1.06202 1.08156 0.87833 1.26448 0.94476 0.99836 1.00396 1.70170 1.14282 1.31339 1.38528 0.84675 0.79536 0.76634 0.76003 1.19073 1.19839 1.17552 0.87723 0.86160 0.86500 0.92315 0.90908 0.93017 0.90875 0.87965 0.90907 0.91524 0.86952 0.82937 0.83271 0.84761 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 14.31 67.78 0.97 -1.53 16 2 C -0.17 -3.15 9.89 25.65 0.25 -2.90 16 3 C 0.08 1.68 6.35 71.24 0.45 2.13 16 4 O -0.40 -10.76 10.33 -148.98 -1.54 -12.30 16 5 C 0.09 2.37 5.95 71.98 0.43 2.80 16 6 C -0.08 -2.49 6.31 71.98 0.45 -2.03 16 7 S -0.27 -9.75 21.72 -56.49 -1.23 -10.98 16 8 C -0.01 -0.29 5.85 71.24 0.42 0.13 16 9 C -0.15 -5.87 5.16 -19.75 -0.10 -5.97 16 10 C -0.04 -1.27 9.48 22.28 0.21 -1.06 16 11 C -0.12 -3.68 6.32 22.35 0.14 -3.54 16 12 Cl -0.07 -1.93 28.95 -2.72 -0.08 -2.01 16 13 C -0.05 -1.63 9.82 22.28 0.22 -1.41 16 14 C -0.23 -9.45 9.17 22.39 0.21 -9.25 16 15 C 0.14 6.43 6.62 22.57 0.15 6.58 16 16 O -0.20 -10.98 8.81 -22.84 -0.20 -11.18 16 17 C -0.41 -22.59 9.49 67.92 0.64 -21.94 16 18 H 0.10 5.15 5.20 -2.91 -0.02 5.13 16 19 C -0.01 -0.65 5.49 84.83 0.47 -0.18 16 20 N -0.91 -52.93 13.67 21.61 0.30 -52.63 16 21 Si 1.01 40.98 29.55 68.60 2.03 43.01 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 25 H 0.10 1.40 7.90 -2.91 -0.02 1.37 16 26 H 0.12 1.36 8.06 -2.91 -0.02 1.33 16 27 H 0.12 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.06 1.15 7.86 -2.39 -0.02 1.13 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.89 7.54 -2.39 -0.02 2.87 16 35 H 0.11 3.31 8.08 -2.39 -0.02 3.29 16 36 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.13 5.44 5.64 -2.91 -0.02 5.42 16 39 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -63.84 368.02 5.24 -58.61 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 1.05 Total: 25.66 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 4.91 Total: -38.18 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.30 Total: -52.63 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.74 Total: -23.47 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: -9.75 SS G_CDS: -1.23 Total: -10.98 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -63.84 5.24 -58.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842174088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.872 kcal (2) G-P(sol) polarization free energy of solvation -63.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds