Wall clock time and date at job start Tue Mar 31 2020 14:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32092 * 122.70832 * 2 1 4 4 C 1.29764 * 116.85567 * 179.97438 * 3 2 1 5 5 S 1.76201 * 124.95239 * 180.02562 * 4 3 2 6 6 S 1.70961 * 110.09286 * 0.02562 * 4 3 2 7 7 C 1.33337 * 122.70475 * 179.97438 * 2 1 3 8 8 C 1.50703 * 125.94921 * 0.02562 * 7 2 1 9 9 C 1.50705 * 109.46795 * 89.99452 * 8 7 2 10 10 O 1.21278 * 120.00118 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99586 * 180.02562 * 9 8 7 12 12 C 1.47418 * 125.64763 * 0.02603 * 11 9 8 13 13 C 1.54910 * 104.83300 * 204.09182 * 12 11 9 14 14 C 1.55155 * 101.58091 * 322.99277 * 13 12 11 15 15 O 1.42904 * 110.72122 * 277.13672 * 14 13 12 16 16 C 1.50696 * 110.72189 * 153.86402 * 14 13 12 17 17 H 1.08000 * 120.00412 * 241.45053 * 16 14 13 18 18 C 1.37875 * 119.99862 * 61.45481 * 16 14 13 19 19 N 1.31508 * 120.00262 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99853 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47246 * 90.00037 * 20 18 16 22 22 H 1.48504 * 109.47049 * 209.99906 * 20 18 16 23 23 H 1.48500 * 109.47176 * 330.00061 * 20 18 16 24 24 C 1.47015 * 125.64637 * 179.71939 * 11 9 8 25 25 H 1.08998 * 109.47631 * 90.02360 * 1 2 3 26 26 H 1.09005 * 109.47500 * 210.02797 * 1 2 3 27 27 H 1.09002 * 109.47135 * 330.02330 * 1 2 3 28 28 H 1.40994 * 100.00174 * 89.97551 * 5 4 3 29 29 H 1.08998 * 109.47237 * 209.99368 * 8 7 2 30 30 H 1.08995 * 109.46614 * 329.99804 * 8 7 2 31 31 H 1.08996 * 110.37311 * 322.92829 * 12 11 9 32 32 H 1.09003 * 110.36790 * 85.14685 * 12 11 9 33 33 H 1.08999 * 111.00359 * 81.06606 * 13 12 11 34 34 H 1.09001 * 111.00729 * 204.92021 * 13 12 11 35 35 H 0.96692 * 114.00170 * 298.54431 * 15 14 13 36 36 H 0.97002 * 120.00218 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.88384 * 298.39685 * 24 11 9 38 38 H 1.09005 * 109.88507 * 59.56010 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2207 1.1115 0.0000 4 6 3.5116 0.9791 0.0005 5 16 4.6630 2.3129 0.0013 6 16 3.9321 -0.6779 0.0004 7 6 2.2274 -1.1220 0.0005 8 6 1.6788 -2.5256 0.0006 9 6 1.4964 -2.9937 -1.4203 10 8 1.7840 -2.2599 -2.3421 11 7 1.0136 -4.2278 -1.6665 12 6 0.6251 -5.2178 -0.6456 13 6 0.7456 -6.5888 -1.3566 14 6 0.2540 -6.2422 -2.7868 15 8 -1.1734 -6.2656 -2.8504 16 6 0.8498 -7.1865 -3.7989 17 1 1.4841 -6.8052 -4.5854 18 6 0.5849 -8.5373 -3.7209 19 7 -0.1880 -9.0017 -2.7635 20 14 1.3239 -9.7080 -4.9750 21 1 2.6405 -10.1906 -4.4861 22 1 0.4135 -10.8651 -5.1687 23 1 1.5054 -8.9991 -6.2672 24 6 0.7813 -4.8071 -2.9975 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8897 0.5143 27 1 -0.3633 0.8902 0.5135 28 1 4.8220 2.4983 1.3899 29 1 2.3753 -3.1879 0.5147 30 1 0.7175 -2.5399 0.5141 31 1 1.3040 -5.1712 0.2059 32 1 -0.4013 -5.0457 -0.3215 33 1 1.7802 -6.9315 -1.3715 34 1 0.0969 -7.3297 -0.8894 35 1 -1.5620 -7.1277 -2.6484 36 1 -0.3741 -9.9521 -2.7084 37 1 0.0424 -4.2139 -3.5362 38 1 1.7161 -4.8361 -3.5575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:56 Heat of formation + Delta-G solvation = -36.639006 kcal Electronic energy + Delta-G solvation = -23304.128932 eV Core-core repulsion = 19785.810486 eV Total energy + Delta-G solvation = -3518.318446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.25089 -39.36640 -37.37431 -34.40750 -33.40112 -32.28361 -30.53035 -29.54324 -28.40516 -26.50127 -25.29846 -24.44463 -22.42418 -20.12607 -19.51084 -19.05265 -18.38499 -17.48875 -17.34012 -16.80349 -15.76150 -15.57054 -15.18279 -15.00551 -14.47204 -14.25576 -13.92546 -13.82210 -13.35990 -13.06115 -12.96638 -12.71219 -12.43173 -12.13042 -11.98532 -11.64983 -11.49870 -11.44916 -11.41666 -11.25663 -10.94124 -10.71193 -10.53554 -10.19192 -10.01488 -9.71979 -9.47711 -9.31376 -8.86187 -8.73258 -8.56638 -8.30645 -8.13220 -6.34815 -4.42303 0.18820 0.78248 1.33441 1.50271 2.01165 2.62290 2.88918 3.16178 3.24152 3.28271 3.43216 4.22314 4.26244 4.49498 4.78590 4.82570 4.94734 5.19391 5.27545 5.43635 5.53322 5.59862 5.64945 5.68580 5.80890 5.91068 6.07306 6.13168 6.36985 6.59632 6.80792 6.86726 7.21249 7.27087 7.35769 7.67138 7.94990 7.96884 8.46661 8.60624 9.23510 9.32613 10.72726 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.002666 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.503214 B =10501.977193 C =10968.720934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.066 3.934 3 N -0.418 5.418 4 C -0.005 4.005 5 S -0.037 6.037 6 S 0.200 5.800 7 C -0.175 4.175 8 C -0.066 4.066 9 C 0.523 3.477 10 O -0.542 6.542 11 N -0.606 5.606 12 C 0.092 3.908 13 C -0.135 4.135 14 C 0.247 3.753 15 O -0.585 6.585 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.123 3.877 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.382 0.618 36 H 0.268 0.732 37 H 0.062 0.938 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 12.725 11.622 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 N -0.135 5.135 4 C -0.391 4.391 5 S 0.116 5.884 6 S 0.453 5.547 7 C -0.299 4.299 8 C -0.108 4.108 9 C 0.309 3.691 10 O -0.421 6.421 11 N -0.339 5.339 12 C -0.031 4.031 13 C -0.173 4.173 14 C 0.207 3.793 15 O -0.394 6.394 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.002 3.998 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.232 0.768 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.813 14.403 10.814 19.256 hybrid contribution -1.196 -2.006 0.464 2.382 sum 5.617 12.396 11.278 17.676 Atomic orbital electron populations 1.20397 0.86671 1.03136 1.03620 1.20171 0.98393 0.86005 1.02438 1.66978 1.03633 1.31287 1.11643 1.27197 0.97104 1.00301 1.14454 1.86974 1.48145 1.40932 1.12356 1.84017 1.05653 1.00459 1.64605 1.25334 0.96175 0.99612 1.08783 1.20149 1.03597 0.90356 0.96741 1.19802 0.78238 0.80730 0.90295 1.90711 1.51316 1.53984 1.46042 1.48627 1.62155 1.13250 1.09851 1.22574 0.99111 0.90506 0.90907 1.23306 1.02462 0.93038 0.98531 1.19469 0.79529 0.88734 0.91558 1.86141 1.21336 1.38265 1.93669 1.21497 1.30711 0.91745 1.13359 0.91755 1.24978 0.94330 0.98201 0.95467 1.69687 1.36949 1.14888 1.32000 0.86414 0.78910 0.80067 0.81605 1.20465 1.20990 1.19654 1.22094 1.00208 0.94887 0.82618 0.90062 0.90611 0.90549 0.93468 0.87518 0.86585 0.92112 0.91681 0.91369 0.89238 0.76765 0.92185 0.91999 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.05 36.00 0.36 -0.53 16 2 C 0.07 0.91 6.74 -84.20 -0.57 0.34 16 3 N -0.42 -6.07 10.59 -10.95 -0.12 -6.19 16 4 C -0.01 -0.07 7.68 51.89 0.40 0.33 16 5 S -0.04 -0.38 26.26 -107.50 -2.82 -3.20 16 6 S 0.20 2.45 23.19 -107.50 -2.49 -0.05 16 7 C -0.18 -2.34 5.06 -36.02 -0.18 -2.52 16 8 C -0.07 -0.82 4.92 -29.03 -0.14 -0.96 16 9 C 0.52 9.00 7.84 -10.98 -0.09 8.92 16 10 O -0.54 -11.32 16.36 5.56 0.09 -11.22 16 11 N -0.61 -11.04 3.33 -170.52 -0.57 -11.61 16 12 C 0.09 1.48 6.68 -2.53 -0.02 1.46 16 13 C -0.13 -2.70 5.47 -24.58 -0.13 -2.84 16 14 C 0.25 5.68 0.84 -89.93 -0.08 5.60 16 15 O -0.59 -14.01 13.06 -35.23 -0.46 -14.47 16 16 C -0.53 -13.53 8.22 -34.44 -0.28 -13.82 16 17 H 0.06 1.65 7.58 -52.49 -0.40 1.25 16 18 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 19 N -0.90 -22.15 10.69 55.43 0.59 -21.56 16 20 Si 0.90 19.77 29.54 -169.99 -5.02 14.74 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C 0.12 2.66 6.22 -3.06 -0.02 2.64 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 0.70 6.70 -51.93 -0.35 0.36 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 0.79 9.55 96.90 0.93 1.71 16 29 H 0.11 1.08 7.85 -51.93 -0.41 0.68 16 30 H 0.12 1.15 6.74 -51.93 -0.35 0.80 16 31 H 0.06 0.78 7.48 -51.93 -0.39 0.39 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 34 H 0.09 1.87 7.54 -51.93 -0.39 1.48 16 35 H 0.38 9.13 7.49 45.56 0.34 9.48 16 36 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 37 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.61 7.66 -51.93 -0.40 1.22 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -29.11 346.77 -9.07 -38.18 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -2.65 Total: 9.78 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -0.84 Total: 0.36 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.09 Total: -39.35 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.37 Total: -25.69 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -5.32 Total: -3.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.11 -9.07 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.537 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds