Wall clock time and date at job start Tue Mar 31 2020 14:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32092 * 122.70832 * 2 1 4 4 C 1.29764 * 116.85567 * 179.97438 * 3 2 1 5 5 S 1.76201 * 124.95239 * 180.02562 * 4 3 2 6 6 S 1.70961 * 110.09286 * 0.02562 * 4 3 2 7 7 C 1.33337 * 122.70475 * 179.97438 * 2 1 3 8 8 C 1.50703 * 125.94921 * 0.02562 * 7 2 1 9 9 C 1.50705 * 109.46795 * 89.99452 * 8 7 2 10 10 O 1.21278 * 120.00118 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99586 * 180.02562 * 9 8 7 12 12 C 1.47418 * 125.64763 * 0.02603 * 11 9 8 13 13 C 1.54910 * 104.83300 * 204.09182 * 12 11 9 14 14 C 1.55155 * 101.58091 * 322.99277 * 13 12 11 15 15 O 1.42904 * 110.72122 * 277.13672 * 14 13 12 16 16 C 1.50696 * 110.72189 * 153.86402 * 14 13 12 17 17 H 1.08000 * 120.00412 * 241.45053 * 16 14 13 18 18 C 1.37875 * 119.99862 * 61.45481 * 16 14 13 19 19 N 1.31508 * 120.00262 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99853 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47246 * 90.00037 * 20 18 16 22 22 H 1.48504 * 109.47049 * 209.99906 * 20 18 16 23 23 H 1.48500 * 109.47176 * 330.00061 * 20 18 16 24 24 C 1.47015 * 125.64637 * 179.71939 * 11 9 8 25 25 H 1.08998 * 109.47631 * 90.02360 * 1 2 3 26 26 H 1.09005 * 109.47500 * 210.02797 * 1 2 3 27 27 H 1.09002 * 109.47135 * 330.02330 * 1 2 3 28 28 H 1.40994 * 100.00174 * 89.97551 * 5 4 3 29 29 H 1.08998 * 109.47237 * 209.99368 * 8 7 2 30 30 H 1.08995 * 109.46614 * 329.99804 * 8 7 2 31 31 H 1.08996 * 110.37311 * 322.92829 * 12 11 9 32 32 H 1.09003 * 110.36790 * 85.14685 * 12 11 9 33 33 H 1.08999 * 111.00359 * 81.06606 * 13 12 11 34 34 H 1.09001 * 111.00729 * 204.92021 * 13 12 11 35 35 H 0.96692 * 114.00170 * 298.54431 * 15 14 13 36 36 H 0.97002 * 120.00218 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.88384 * 298.39685 * 24 11 9 38 38 H 1.09005 * 109.88507 * 59.56010 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2207 1.1115 0.0000 4 6 3.5116 0.9791 0.0005 5 16 4.6630 2.3129 0.0013 6 16 3.9321 -0.6779 0.0004 7 6 2.2274 -1.1220 0.0005 8 6 1.6788 -2.5256 0.0006 9 6 1.4964 -2.9937 -1.4203 10 8 1.7840 -2.2599 -2.3421 11 7 1.0136 -4.2278 -1.6665 12 6 0.6251 -5.2178 -0.6456 13 6 0.7456 -6.5888 -1.3566 14 6 0.2540 -6.2422 -2.7868 15 8 -1.1734 -6.2656 -2.8504 16 6 0.8498 -7.1865 -3.7989 17 1 1.4841 -6.8052 -4.5854 18 6 0.5849 -8.5373 -3.7209 19 7 -0.1880 -9.0017 -2.7635 20 14 1.3239 -9.7080 -4.9750 21 1 2.6405 -10.1906 -4.4861 22 1 0.4135 -10.8651 -5.1687 23 1 1.5054 -8.9991 -6.2672 24 6 0.7813 -4.8071 -2.9975 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8897 0.5143 27 1 -0.3633 0.8902 0.5135 28 1 4.8220 2.4983 1.3899 29 1 2.3753 -3.1879 0.5147 30 1 0.7175 -2.5399 0.5141 31 1 1.3040 -5.1712 0.2059 32 1 -0.4013 -5.0457 -0.3215 33 1 1.7802 -6.9315 -1.3715 34 1 0.0969 -7.3297 -0.8894 35 1 -1.5620 -7.1277 -2.6484 36 1 -0.3741 -9.9521 -2.7084 37 1 0.0424 -4.2139 -3.5362 38 1 1.7161 -4.8361 -3.5575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:56 Heat of formation + Delta-G solvation = -57.146027 kcal Electronic energy + Delta-G solvation = -23305.018183 eV Core-core repulsion = 19785.810486 eV Total energy + Delta-G solvation = -3519.207697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39328 -40.65152 -38.96602 -36.08658 -34.43290 -34.20205 -31.80040 -30.86311 -29.96466 -27.71600 -26.67179 -25.67076 -23.87953 -21.69267 -20.76636 -20.17345 -19.45272 -19.15653 -18.36683 -18.20158 -17.02165 -16.88948 -16.73383 -16.40617 -16.02226 -15.57007 -15.27322 -14.88020 -14.69985 -14.22301 -14.17362 -13.85416 -13.76308 -13.56725 -13.28257 -13.22409 -13.10561 -12.91437 -12.65104 -12.42737 -12.31304 -12.28234 -12.19066 -11.95837 -11.26617 -11.08074 -10.95810 -10.63561 -10.35776 -10.12890 -9.80951 -9.62731 -9.37907 -8.24407 -6.38044 -0.75853 -0.10493 0.42564 0.56445 1.19812 1.40907 1.44997 1.53132 1.57182 1.71204 2.07137 2.40214 3.01441 3.32911 3.48511 3.62803 3.88585 3.93274 4.03380 4.30960 4.34391 4.40328 4.47807 4.60880 4.65426 4.70472 4.73761 4.81764 4.93982 5.19499 5.21832 5.25353 5.48915 5.57340 5.77960 6.09636 6.40153 6.57602 6.66170 7.10102 7.32240 7.42016 8.81237 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.002666 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.503214 B =10501.977193 C =10968.720934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.446 5.446 4 C -0.015 4.015 5 S -0.042 6.042 6 S 0.219 5.781 7 C -0.193 4.193 8 C -0.055 4.055 9 C 0.521 3.479 10 O -0.585 6.585 11 N -0.608 5.608 12 C 0.100 3.900 13 C -0.127 4.127 14 C 0.235 3.765 15 O -0.592 6.592 16 C -0.563 4.563 17 H 0.048 0.952 18 C 0.040 3.960 19 N -0.903 5.903 20 Si 0.955 3.045 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.280 1.280 24 C 0.131 3.869 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.148 0.852 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.380 0.620 36 H 0.272 0.728 37 H 0.041 0.959 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 12.670 13.782 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 N -0.164 5.164 4 C -0.400 4.400 5 S 0.110 5.890 6 S 0.472 5.528 7 C -0.316 4.316 8 C -0.097 4.097 9 C 0.310 3.690 10 O -0.466 6.466 11 N -0.341 5.341 12 C -0.021 4.021 13 C -0.165 4.165 14 C 0.195 3.805 15 O -0.401 6.401 16 C -0.601 4.601 17 H 0.066 0.934 18 C -0.162 4.162 19 N -0.541 5.541 20 Si 0.781 3.219 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.205 1.205 24 C 0.007 3.993 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.166 0.834 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.303 14.344 13.009 20.696 hybrid contribution -1.306 -1.928 -0.239 2.341 sum 5.997 12.416 12.770 18.793 Atomic orbital electron populations 1.20469 0.85476 1.04795 1.03065 1.20556 0.99444 0.86116 1.02150 1.67043 1.04351 1.32039 1.12947 1.27600 0.97210 1.01544 1.13612 1.86949 1.47032 1.40175 1.14854 1.83878 1.05167 0.99855 1.63898 1.25511 0.96696 0.99971 1.09441 1.20208 1.06136 0.90144 0.93193 1.20689 0.76592 0.79589 0.92086 1.90695 1.52873 1.54987 1.48046 1.48661 1.62544 1.14164 1.08705 1.22638 1.01314 0.87197 0.90967 1.23079 1.01239 0.95304 0.96925 1.19597 0.78862 0.89038 0.93032 1.86126 1.22078 1.38035 1.93874 1.21711 1.31419 0.92921 1.14086 0.93419 1.25520 0.94672 0.99101 0.96879 1.69733 1.36838 1.15225 1.32349 0.85615 0.78529 0.78390 0.79406 1.19873 1.20362 1.20497 1.21747 0.98641 0.94277 0.84596 0.91580 0.88345 0.89607 0.90536 0.84425 0.83409 0.87421 0.90247 0.92445 0.90078 0.77068 0.91890 0.94047 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.05 71.23 0.72 -0.93 16 2 C 0.05 1.39 6.74 41.41 0.28 1.67 16 3 N -0.45 -12.48 10.59 -188.54 -2.00 -14.48 16 4 C -0.01 -0.37 7.68 130.55 1.00 0.63 16 5 S -0.04 -0.81 26.26 -56.49 -1.48 -2.29 16 6 S 0.22 4.98 23.19 -56.49 -1.31 3.67 16 7 C -0.19 -4.71 5.06 24.58 0.12 -4.58 16 8 C -0.06 -1.17 4.92 29.10 0.14 -1.03 16 9 C 0.52 17.06 7.84 87.66 0.69 17.75 16 10 O -0.59 -24.35 16.36 -3.02 -0.05 -24.39 16 11 N -0.61 -21.27 3.33 -811.79 -2.70 -23.97 16 12 C 0.10 2.93 6.68 86.86 0.58 3.51 16 13 C -0.13 -4.94 5.47 31.99 0.17 -4.77 16 14 C 0.23 10.87 0.84 -10.35 -0.01 10.86 16 15 O -0.59 -28.60 13.06 -148.98 -1.95 -30.55 16 16 C -0.56 -29.07 8.22 25.60 0.21 -28.86 16 17 H 0.05 2.54 7.58 -2.91 -0.02 2.52 16 18 C 0.04 1.99 5.28 84.66 0.45 2.44 16 19 N -0.90 -44.28 10.69 21.45 0.23 -44.05 16 20 Si 0.95 40.50 29.54 68.60 2.03 42.53 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.13 5.73 6.22 86.73 0.54 6.27 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.10 1.54 6.70 -2.38 -0.02 1.52 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.13 1.72 9.55 73.80 0.70 2.42 16 29 H 0.14 2.11 7.85 -2.39 -0.02 2.09 16 30 H 0.15 2.22 6.74 -2.39 -0.02 2.20 16 31 H 0.11 2.20 7.48 -2.39 -0.02 2.18 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 34 H 0.08 3.29 7.54 -2.39 -0.02 3.27 16 35 H 0.38 18.30 7.49 -74.06 -0.55 17.74 16 36 H 0.27 12.71 8.31 -92.71 -0.77 11.94 16 37 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 38 H 0.06 2.58 7.66 -2.38 -0.02 2.56 16 Total: -1.00 -64.38 346.77 -1.06 -65.44 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 1.28 Total: 25.13 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 4.90 Total: 2.96 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -4.47 Total: -82.51 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -2.00 Total: -54.94 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -2.79 Total: 1.38 kcal Total: -64.38 -1.06 -65.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.295 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds