Wall clock time and date at job start Tue Mar 31 2020 14:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32100 * 122.70773 * 2 1 4 4 C 1.29751 * 116.85229 * 180.30258 * 3 2 1 5 5 S 1.76208 * 124.95028 * 179.71880 * 4 3 2 6 6 S 1.70961 * 110.09910 * 359.72197 * 4 3 2 7 7 C 1.33338 * 122.70368 * 179.77097 * 2 1 3 8 8 C 1.50691 * 125.95032 * 0.02562 * 7 2 1 9 9 C 1.50699 * 109.47498 * 89.71185 * 8 7 2 10 10 O 1.21287 * 119.99744 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00274 * 179.97438 * 9 8 7 12 12 C 1.47421 * 125.64539 * 0.02821 * 11 9 8 13 13 C 1.54917 * 104.82929 * 155.83778 * 12 11 9 14 14 C 1.55148 * 101.58107 * 37.00863 * 13 12 11 15 15 O 1.42894 * 110.72342 * 83.04256 * 14 13 12 16 16 C 1.50704 * 110.71734 * 206.13399 * 14 13 12 17 17 H 1.08004 * 119.99892 * 121.59863 * 16 14 13 18 18 C 1.37876 * 120.00088 * 301.32751 * 16 14 13 19 19 N 1.31515 * 120.00123 * 354.04885 * 18 16 14 20 20 Si 1.86808 * 119.99858 * 174.05026 * 18 16 14 21 21 H 1.48498 * 109.46940 * 94.98566 * 20 18 16 22 22 H 1.48494 * 109.46842 * 214.98418 * 20 18 16 23 23 H 1.48496 * 109.47234 * 334.98543 * 20 18 16 24 24 C 1.47022 * 125.65068 * 179.97438 * 11 9 8 25 25 H 1.09002 * 109.47038 * 270.22757 * 1 2 3 26 26 H 1.09000 * 109.46708 * 30.23026 * 1 2 3 27 27 H 1.09003 * 109.47148 * 150.22260 * 1 2 3 28 28 H 1.40994 * 99.99779 * 0.02562 * 5 4 3 29 29 H 1.09006 * 109.46840 * 329.71427 * 8 7 2 30 30 H 1.09008 * 109.47244 * 209.71605 * 8 7 2 31 31 H 1.08996 * 110.37151 * 36.99492 * 12 11 9 32 32 H 1.09003 * 110.46359 * 274.71826 * 12 11 9 33 33 H 1.08999 * 110.99902 * 278.93011 * 13 12 11 34 34 H 1.08999 * 111.00141 * 155.08736 * 13 12 11 35 35 H 0.96703 * 114.00533 * 58.29098 * 15 14 13 36 36 H 0.96997 * 119.99852 * 180.02562 * 19 18 16 37 37 H 1.09006 * 109.88107 * 61.67447 * 24 11 9 38 38 H 1.09000 * 109.88040 * 300.51653 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.1115 0.0000 4 6 3.5116 0.9792 -0.0061 5 16 4.6630 2.3130 -0.0145 6 16 3.9322 -0.6779 -0.0049 7 6 2.2274 -1.1220 0.0045 8 6 1.6789 -2.5255 0.0095 9 6 1.4899 -2.9962 -1.4095 10 8 1.7733 -2.2641 -2.3340 11 7 1.0070 -4.2311 -1.6513 12 6 0.6243 -5.2197 -0.6269 13 6 -0.3977 -6.1460 -1.3321 14 6 0.1930 -6.2282 -2.7644 15 8 1.2220 -7.2173 -2.8310 16 6 -0.8896 -6.5193 -3.7716 17 1 -1.0666 -5.8339 -4.5874 18 6 -1.6503 -7.6633 -3.6549 19 7 -1.3565 -8.5575 -2.7364 20 14 -3.0983 -7.9431 -4.8015 21 1 -2.6644 -8.7743 -5.9530 22 1 -4.1831 -8.6423 -4.0672 23 1 -3.5983 -6.6351 -5.2958 24 6 0.7737 -4.8148 -2.9803 25 1 -0.3633 0.0041 1.0277 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5104 28 1 3.7720 3.4056 -0.0117 29 1 0.7199 -2.5389 0.5275 30 1 2.3778 -3.1870 0.5218 31 1 0.1609 -4.7229 0.2255 32 1 1.4948 -5.7911 -0.3047 33 1 -1.3901 -5.6954 -1.3439 34 1 -0.4224 -7.1294 -0.8626 35 1 0.9314 -8.1049 -2.5804 36 1 -1.8914 -9.3624 -2.6545 37 1 1.7145 -4.8802 -3.5269 38 1 0.0624 -4.2023 -3.5345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:59 Heat of formation + Delta-G solvation = -39.924534 kcal Electronic energy + Delta-G solvation = -23327.023451 eV Core-core repulsion = 19808.562533 eV Total energy + Delta-G solvation = -3518.460917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20257 -39.33287 -37.34902 -34.36734 -33.35606 -32.28187 -30.50665 -29.51018 -28.39176 -26.48028 -25.26387 -24.39972 -22.40030 -20.11702 -19.42869 -19.14699 -18.53741 -17.38134 -17.26671 -16.73570 -15.75786 -15.23230 -15.09500 -14.96457 -14.74713 -14.25591 -13.89173 -13.78175 -13.17079 -12.95226 -12.87633 -12.85389 -12.37346 -12.14056 -12.03668 -11.61891 -11.54132 -11.49543 -11.35809 -11.19069 -10.95089 -10.71410 -10.49412 -10.17460 -10.03595 -9.95828 -9.55096 -9.40010 -9.26027 -8.68845 -8.29228 -8.10840 -7.96297 -6.34139 -4.40244 0.42441 0.66729 1.34203 1.58186 1.98136 2.51811 2.92683 3.16748 3.24910 3.28801 3.46849 4.23392 4.32743 4.58471 4.84855 4.88934 4.96170 5.30910 5.33882 5.46910 5.48898 5.60833 5.66304 5.72739 5.82175 5.92714 6.10321 6.15830 6.38459 6.61318 6.81886 6.87217 7.20547 7.28201 7.37970 7.68326 7.98174 7.99824 8.50424 8.62441 9.24539 9.35993 10.73969 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.002627 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.025722 B =10654.974595 C =10898.215065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.084 3.916 3 N -0.475 5.475 4 C 0.021 3.979 5 S -0.032 6.032 6 S 0.212 5.788 7 C -0.198 4.198 8 C -0.060 4.060 9 C 0.521 3.479 10 O -0.543 6.543 11 N -0.607 5.607 12 C 0.092 3.908 13 C -0.136 4.136 14 C 0.247 3.753 15 O -0.585 6.585 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.074 3.926 19 N -0.895 5.895 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.124 3.876 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.382 0.618 36 H 0.268 0.732 37 H 0.061 0.939 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 13.035 11.077 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 N -0.195 5.195 4 C -0.365 4.365 5 S 0.123 5.877 6 S 0.465 5.535 7 C -0.323 4.323 8 C -0.103 4.103 9 C 0.308 3.692 10 O -0.421 6.421 11 N -0.340 5.340 12 C -0.031 4.031 13 C -0.174 4.174 14 C 0.207 3.793 15 O -0.394 6.394 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.002 3.998 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.872 14.449 10.471 19.928 hybrid contribution -3.402 -0.701 -0.375 3.493 sum 5.470 13.748 10.096 17.913 Atomic orbital electron populations 1.20375 0.86821 1.03848 1.02716 1.19995 0.98072 0.85843 1.01134 1.66910 1.02597 1.31903 1.18042 1.27379 0.97557 1.01832 1.09717 1.86948 1.07918 0.99596 1.93218 1.83768 1.05812 0.96809 1.67137 1.25065 0.95329 0.99419 1.12479 1.20059 1.03391 0.90426 0.96405 1.19902 0.78102 0.80709 0.90510 1.90706 1.51297 1.54210 1.45858 1.48638 1.62361 1.13188 1.09782 1.22556 0.98999 0.90635 0.90867 1.23307 0.96782 0.98775 0.98576 1.19479 0.84826 0.83504 0.91529 1.86141 1.39618 1.21812 1.91862 1.21495 1.16274 1.07535 1.11991 0.91794 1.24970 0.97432 0.95235 0.95278 1.69690 1.40091 1.09685 1.33901 0.86425 0.81643 0.78506 0.80580 1.20478 1.20972 1.19653 1.22086 1.00348 0.94605 0.82750 0.90539 0.90568 0.90398 0.91226 0.86762 0.87634 0.92021 0.91724 0.91334 0.89326 0.76788 0.92220 0.92087 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.81 36.01 0.35 -0.55 16 2 C 0.08 1.18 6.74 -84.19 -0.57 0.61 16 3 N -0.47 -6.85 10.59 -10.94 -0.12 -6.97 16 4 C 0.02 0.27 7.68 51.88 0.40 0.67 16 5 S -0.03 -0.31 26.26 -107.50 -2.82 -3.13 16 6 S 0.21 2.63 23.19 -107.50 -2.49 0.14 16 7 C -0.20 -2.69 5.06 -36.02 -0.18 -2.87 16 8 C -0.06 -0.76 4.62 -29.04 -0.13 -0.90 16 9 C 0.52 9.06 7.84 -10.99 -0.09 8.98 16 10 O -0.54 -11.40 16.36 5.55 0.09 -11.31 16 11 N -0.61 -11.14 3.33 -170.52 -0.57 -11.71 16 12 C 0.09 1.50 6.69 -2.53 -0.02 1.48 16 13 C -0.14 -2.72 5.43 -24.58 -0.13 -2.86 16 14 C 0.25 5.69 0.84 -89.94 -0.08 5.62 16 15 O -0.59 -14.13 13.08 -35.23 -0.46 -14.59 16 16 C -0.53 -13.60 8.20 -34.44 -0.28 -13.88 16 17 H 0.06 1.65 7.61 -52.48 -0.40 1.25 16 18 C 0.07 1.84 5.25 -17.82 -0.09 1.75 16 19 N -0.89 -22.22 10.75 55.43 0.60 -21.63 16 20 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 24 C 0.12 2.68 6.22 -3.07 -0.02 2.66 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.93 7.34 -51.93 -0.38 0.55 16 28 H 0.12 1.08 9.55 96.90 0.93 2.00 16 29 H 0.11 1.17 7.13 -51.93 -0.37 0.80 16 30 H 0.11 1.11 8.14 -51.92 -0.42 0.68 16 31 H 0.06 0.79 7.48 -51.93 -0.39 0.40 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 34 H 0.09 1.85 7.56 -51.93 -0.39 1.45 16 35 H 0.38 9.17 7.53 45.56 0.34 9.51 16 36 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 37 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 38 H 0.07 1.62 7.68 -51.93 -0.40 1.22 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -29.27 347.68 -9.12 -38.38 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -2.72 Total: 10.09 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.84 Total: 0.70 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.09 Total: -40.30 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.37 Total: -25.90 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -5.32 Total: -3.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.27 -9.12 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.540 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds