Wall clock time and date at job start Tue Mar 31 2020 14:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32100 * 122.70773 * 2 1 4 4 C 1.29751 * 116.85229 * 180.30258 * 3 2 1 5 5 S 1.76208 * 124.95028 * 179.71880 * 4 3 2 6 6 S 1.70961 * 110.09910 * 359.72197 * 4 3 2 7 7 C 1.33338 * 122.70368 * 179.77097 * 2 1 3 8 8 C 1.50691 * 125.95032 * 0.02562 * 7 2 1 9 9 C 1.50699 * 109.47498 * 89.71185 * 8 7 2 10 10 O 1.21287 * 119.99744 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00274 * 179.97438 * 9 8 7 12 12 C 1.47421 * 125.64539 * 0.02821 * 11 9 8 13 13 C 1.54917 * 104.82929 * 155.83778 * 12 11 9 14 14 C 1.55148 * 101.58107 * 37.00863 * 13 12 11 15 15 O 1.42894 * 110.72342 * 83.04256 * 14 13 12 16 16 C 1.50704 * 110.71734 * 206.13399 * 14 13 12 17 17 H 1.08004 * 119.99892 * 121.59863 * 16 14 13 18 18 C 1.37876 * 120.00088 * 301.32751 * 16 14 13 19 19 N 1.31515 * 120.00123 * 354.04885 * 18 16 14 20 20 Si 1.86808 * 119.99858 * 174.05026 * 18 16 14 21 21 H 1.48498 * 109.46940 * 94.98566 * 20 18 16 22 22 H 1.48494 * 109.46842 * 214.98418 * 20 18 16 23 23 H 1.48496 * 109.47234 * 334.98543 * 20 18 16 24 24 C 1.47022 * 125.65068 * 179.97438 * 11 9 8 25 25 H 1.09002 * 109.47038 * 270.22757 * 1 2 3 26 26 H 1.09000 * 109.46708 * 30.23026 * 1 2 3 27 27 H 1.09003 * 109.47148 * 150.22260 * 1 2 3 28 28 H 1.40994 * 99.99779 * 0.02562 * 5 4 3 29 29 H 1.09006 * 109.46840 * 329.71427 * 8 7 2 30 30 H 1.09008 * 109.47244 * 209.71605 * 8 7 2 31 31 H 1.08996 * 110.37151 * 36.99492 * 12 11 9 32 32 H 1.09003 * 110.46359 * 274.71826 * 12 11 9 33 33 H 1.08999 * 110.99902 * 278.93011 * 13 12 11 34 34 H 1.08999 * 111.00141 * 155.08736 * 13 12 11 35 35 H 0.96703 * 114.00533 * 58.29098 * 15 14 13 36 36 H 0.96997 * 119.99852 * 180.02562 * 19 18 16 37 37 H 1.09006 * 109.88107 * 61.67447 * 24 11 9 38 38 H 1.09000 * 109.88040 * 300.51653 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.1115 0.0000 4 6 3.5116 0.9792 -0.0061 5 16 4.6630 2.3130 -0.0145 6 16 3.9322 -0.6779 -0.0049 7 6 2.2274 -1.1220 0.0045 8 6 1.6789 -2.5255 0.0095 9 6 1.4899 -2.9962 -1.4095 10 8 1.7733 -2.2641 -2.3340 11 7 1.0070 -4.2311 -1.6513 12 6 0.6243 -5.2197 -0.6269 13 6 -0.3977 -6.1460 -1.3321 14 6 0.1930 -6.2282 -2.7644 15 8 1.2220 -7.2173 -2.8310 16 6 -0.8896 -6.5193 -3.7716 17 1 -1.0666 -5.8339 -4.5874 18 6 -1.6503 -7.6633 -3.6549 19 7 -1.3565 -8.5575 -2.7364 20 14 -3.0983 -7.9431 -4.8015 21 1 -2.6644 -8.7743 -5.9530 22 1 -4.1831 -8.6423 -4.0672 23 1 -3.5983 -6.6351 -5.2958 24 6 0.7737 -4.8148 -2.9803 25 1 -0.3633 0.0041 1.0277 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5104 28 1 3.7720 3.4056 -0.0117 29 1 0.7199 -2.5389 0.5275 30 1 2.3778 -3.1870 0.5218 31 1 0.1609 -4.7229 0.2255 32 1 1.4948 -5.7911 -0.3047 33 1 -1.3901 -5.6954 -1.3439 34 1 -0.4224 -7.1294 -0.8626 35 1 0.9314 -8.1049 -2.5804 36 1 -1.8914 -9.3624 -2.6545 37 1 1.7145 -4.8802 -3.5269 38 1 0.0624 -4.2023 -3.5345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:58 Heat of formation + Delta-G solvation = -60.494020 kcal Electronic energy + Delta-G solvation = -23327.915411 eV Core-core repulsion = 19808.562533 eV Total energy + Delta-G solvation = -3519.352877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36198 -40.62016 -38.95028 -36.05967 -34.39839 -34.21136 -31.79153 -30.84480 -29.96285 -27.70508 -26.65911 -25.62376 -23.86518 -21.70014 -20.74694 -20.11924 -19.69282 -19.12010 -18.24772 -18.15878 -17.04713 -16.88926 -16.52339 -16.19342 -16.02534 -15.83623 -15.17683 -14.80376 -14.78928 -14.23054 -13.92651 -13.81357 -13.71084 -13.61286 -13.32908 -13.18791 -13.15866 -13.00979 -12.66397 -12.42154 -12.34303 -12.24973 -12.14079 -11.94677 -11.27079 -11.15013 -10.94869 -10.71250 -10.56284 -10.23425 -10.13214 -9.61647 -8.82285 -8.24564 -6.37022 -0.55487 -0.20486 0.41470 0.63778 1.23573 1.40701 1.44934 1.50868 1.53869 1.59260 2.08982 2.40680 3.01663 3.38614 3.52817 3.67760 3.92328 3.96269 4.02768 4.32517 4.39420 4.43977 4.51584 4.61323 4.67926 4.69350 4.74237 4.80738 4.94396 5.19649 5.21908 5.26513 5.49583 5.55747 5.77920 6.11807 6.41143 6.59015 6.67120 7.12367 7.32165 7.44685 8.81746 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.002627 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.025722 B =10654.974595 C =10898.215065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.071 3.929 3 N -0.500 5.500 4 C 0.009 3.991 5 S -0.008 6.008 6 S 0.224 5.776 7 C -0.217 4.217 8 C -0.049 4.049 9 C 0.520 3.480 10 O -0.585 6.585 11 N -0.609 5.609 12 C 0.100 3.900 13 C -0.127 4.127 14 C 0.234 3.766 15 O -0.594 6.594 16 C -0.563 4.563 17 H 0.047 0.953 18 C 0.041 3.959 19 N -0.902 5.902 20 Si 0.954 3.046 21 H -0.281 1.281 22 H -0.275 1.275 23 H -0.276 1.276 24 C 0.131 3.869 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.380 0.620 36 H 0.272 0.728 37 H 0.039 0.961 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 13.455 13.037 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 N -0.221 5.221 4 C -0.376 4.376 5 S 0.147 5.853 6 S 0.477 5.523 7 C -0.342 4.342 8 C -0.091 4.091 9 C 0.309 3.691 10 O -0.466 6.466 11 N -0.342 5.342 12 C -0.021 4.021 13 C -0.166 4.166 14 C 0.194 3.806 15 O -0.402 6.402 16 C -0.601 4.601 17 H 0.065 0.935 18 C -0.161 4.161 19 N -0.540 5.540 20 Si 0.780 3.220 21 H -0.207 1.207 22 H -0.200 1.200 23 H -0.201 1.201 24 C 0.008 3.992 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.163 0.837 30 H 0.152 0.848 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.757 14.867 12.462 21.284 hybrid contribution -3.293 -0.767 -1.045 3.539 sum 5.465 14.099 11.417 18.947 Atomic orbital electron populations 1.20428 0.85639 1.03357 1.04186 1.20395 0.99138 0.86021 1.00757 1.66970 1.03232 1.32447 1.19403 1.27880 0.97759 1.03220 1.08781 1.86858 1.06980 0.98912 1.92515 1.83644 1.05398 0.96494 1.66762 1.25216 0.95845 0.99754 1.13401 1.20111 1.05809 0.90247 0.92918 1.20785 0.76500 0.79549 0.92254 1.90688 1.52872 1.55180 1.47820 1.48676 1.62794 1.14030 1.08659 1.22625 0.98581 0.89914 0.90982 1.23084 0.97286 0.99367 0.96852 1.19614 0.84352 0.83561 0.93074 1.86126 1.40127 1.21915 1.92081 1.21704 1.17822 1.07954 1.12644 0.93499 1.25517 0.99113 0.94975 0.96504 1.69735 1.40429 1.09666 1.34205 0.85614 0.79381 0.78012 0.79012 1.20651 1.19973 1.20077 1.21741 0.98637 0.94151 0.84690 0.88023 0.91054 0.90835 0.90270 0.83656 0.84782 0.87268 0.90489 0.92243 0.90126 0.77054 0.91894 0.94226 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.81 71.24 0.70 -0.95 16 2 C 0.07 1.89 6.74 41.41 0.28 2.17 16 3 N -0.50 -13.84 10.59 -188.53 -2.00 -15.84 16 4 C 0.01 0.21 7.68 130.55 1.00 1.22 16 5 S -0.01 -0.14 26.26 -56.49 -1.48 -1.62 16 6 S 0.22 5.22 23.19 -56.49 -1.31 3.91 16 7 C -0.22 -5.47 5.06 24.57 0.12 -5.35 16 8 C -0.05 -1.09 4.62 29.10 0.13 -0.95 16 9 C 0.52 17.30 7.84 87.66 0.69 17.99 16 10 O -0.58 -24.56 16.36 -3.05 -0.05 -24.61 16 11 N -0.61 -21.59 3.33 -811.79 -2.70 -24.29 16 12 C 0.10 2.98 6.69 86.86 0.58 3.56 16 13 C -0.13 -4.97 5.43 31.99 0.17 -4.80 16 14 C 0.23 10.91 0.84 -10.36 -0.01 10.90 16 15 O -0.59 -28.99 13.08 -148.98 -1.95 -30.94 16 16 C -0.56 -29.22 8.20 25.60 0.21 -29.01 16 17 H 0.05 2.51 7.61 -2.91 -0.02 2.49 16 18 C 0.04 2.04 5.25 84.65 0.44 2.49 16 19 N -0.90 -44.47 10.75 21.45 0.23 -44.24 16 20 Si 0.95 40.58 29.54 68.60 2.03 42.61 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 C 0.13 5.80 6.22 86.73 0.54 6.34 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.62 7.34 -2.39 -0.02 1.60 16 28 H 0.13 2.10 9.55 73.80 0.70 2.80 16 29 H 0.15 2.32 7.13 -2.38 -0.02 2.30 16 30 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.11 2.26 7.48 -2.39 -0.02 2.25 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 34 H 0.08 3.27 7.56 -2.39 -0.02 3.26 16 35 H 0.38 18.42 7.53 -74.06 -0.56 17.86 16 36 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 37 H 0.04 1.88 8.07 -2.38 -0.02 1.86 16 38 H 0.06 2.63 7.68 -2.39 -0.02 2.61 16 Total: -1.00 -64.31 347.68 -1.10 -65.41 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 1.27 Total: 26.00 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.87 Total: 3.60 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -4.47 Total: -84.37 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.00 Total: -55.54 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -2.79 Total: 2.29 kcal Total: -64.31 -1.10 -65.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.913 kcal (2) G-P(sol) polarization free energy of solvation -64.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds