Wall clock time and date at job start Tue Mar 31 2020 15:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47746 * 2 1 4 4 C 1.50702 * 109.46880 * 120.00453 * 2 1 3 5 5 O 1.20826 * 120.00303 * 119.99561 * 4 2 1 6 6 O 1.34228 * 119.99603 * 299.99284 * 4 2 1 7 7 C 1.45206 * 117.00001 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47091 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46891 * 179.97438 * 8 7 6 10 10 S 1.81002 * 109.46909 * 180.02562 * 9 8 7 11 11 C 1.76208 * 99.99928 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99585 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99499 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00412 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46805 * 89.99788 * 15 13 11 17 17 H 1.48495 * 109.47320 * 209.99905 * 15 13 11 18 18 H 1.48504 * 109.46786 * 329.99932 * 15 13 11 19 19 C 1.50704 * 109.46954 * 239.99340 * 2 1 3 20 20 C 1.38233 * 119.99169 * 299.73541 * 19 2 1 21 21 C 1.38214 * 120.01653 * 179.72574 * 20 19 2 22 22 C 1.38355 * 119.98313 * 0.54065 * 21 20 19 23 23 Cl 1.73601 * 120.01266 * 179.70633 * 22 21 20 24 24 C 1.38351 * 119.97349 * 359.73402 * 22 21 20 25 25 C 1.38209 * 119.98663 * 359.97438 * 24 22 21 26 26 H 1.08994 * 109.47746 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46635 * 300.00697 * 1 2 3 28 28 H 1.09007 * 109.46672 * 60.00013 * 1 2 3 29 29 H 1.09001 * 109.47157 * 299.99890 * 7 6 4 30 30 H 1.09004 * 109.47122 * 60.00023 * 7 6 4 31 31 H 1.08992 * 109.47056 * 300.00206 * 8 7 6 32 32 H 1.09004 * 109.47006 * 60.00090 * 8 7 6 33 33 H 1.09001 * 109.47372 * 300.00036 * 9 8 7 34 34 H 1.08996 * 109.47261 * 60.00575 * 9 8 7 35 35 H 0.97003 * 119.99835 * 180.02562 * 14 13 11 36 36 H 1.08010 * 119.99434 * 359.97438 * 20 19 2 37 37 H 1.07996 * 120.01223 * 180.27111 * 21 20 19 38 38 H 1.08000 * 120.00688 * 179.97438 * 24 22 21 39 39 H 1.08006 * 119.99581 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7269 -1.6930 1.1196 6 8 1.7081 -0.2519 2.4495 7 6 2.2276 -0.9858 3.5897 8 6 1.7565 -0.3185 4.8834 9 6 2.3035 -1.0922 6.0847 10 16 1.7456 -0.3033 7.6152 11 6 2.4989 -1.3677 8.8003 12 1 3.0933 -2.2072 8.4713 13 6 2.3292 -1.1264 10.1566 14 7 2.8924 -1.9213 11.0419 15 14 1.3017 0.3260 10.7256 16 1 -0.1134 -0.0979 10.8772 17 1 1.8147 0.8143 12.0308 18 1 1.3869 1.4164 9.7211 19 6 2.0323 -0.7106 -1.2304 20 6 1.7028 -2.0356 -1.4461 21 6 2.1585 -2.6862 -2.5772 22 6 2.9539 -2.0141 -3.4881 23 17 3.5330 -2.8327 -4.9053 24 6 3.2881 -0.6896 -3.2689 25 6 2.8268 -0.0384 -2.1405 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.8640 -2.0129 3.5569 30 1 3.3171 -0.9848 3.5566 31 1 2.1204 0.7084 4.9159 32 1 0.6670 -0.3192 4.9167 33 1 1.9392 -2.1191 6.0520 34 1 3.3929 -1.0920 6.0516 35 1 2.7735 -1.7530 11.9898 36 1 1.0857 -2.5616 -0.7325 37 1 1.8973 -3.7201 -2.7478 38 1 3.9094 -0.1646 -3.9794 39 1 3.0873 0.9957 -1.9694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845337500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:51 Heat of formation + Delta-G solvation = -92.120531 kcal Electronic energy + Delta-G solvation = -21650.430483 eV Core-core repulsion = 18095.369719 eV Total energy + Delta-G solvation = -3555.060763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01691 -39.58546 -37.14682 -36.65533 -34.63687 -33.57251 -32.47972 -31.52019 -29.78090 -26.92272 -25.70455 -25.08328 -23.32863 -22.71053 -21.47793 -20.46812 -17.87207 -17.64581 -17.37744 -16.93329 -16.58271 -15.95877 -15.39722 -15.02940 -14.85053 -14.52383 -14.32094 -13.96146 -13.86400 -13.50420 -13.21760 -12.89079 -12.85922 -12.67504 -12.45705 -12.27327 -11.90585 -11.68406 -11.61449 -11.50460 -11.26019 -11.19749 -11.12740 -11.01126 -10.64164 -10.40950 -10.25273 -9.85056 -9.43438 -9.04903 -9.03312 -8.64523 -7.01038 -6.32232 -4.05899 0.64013 0.89122 1.72716 2.00886 2.40240 2.97098 3.24493 3.27076 3.41610 3.53225 3.99234 4.23017 4.27523 4.45165 4.51991 4.61227 4.69583 4.77064 4.89023 4.98776 5.00643 5.06680 5.09764 5.22187 5.28705 5.34021 5.35968 5.50889 5.63511 5.65170 5.69755 5.78595 5.82374 6.00523 6.05567 6.29105 6.29863 6.36709 6.52688 7.58133 7.91321 8.40629 9.13021 10.77138 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035246 B = 0.001731 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.228118 B =16175.335899 C =16641.912200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 H 0.119 0.881 4 C 0.462 3.538 5 O -0.499 6.499 6 O -0.353 6.353 7 C 0.072 3.928 8 C -0.101 4.101 9 C -0.085 4.085 10 S -0.206 6.206 11 C -0.506 4.506 12 H 0.089 0.911 13 C 0.092 3.908 14 N -0.880 5.880 15 Si 0.862 3.138 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.238 1.238 19 C -0.073 4.073 20 C -0.072 4.072 21 C -0.111 4.111 22 C -0.031 4.031 23 Cl -0.073 7.073 24 C -0.113 4.113 25 C -0.095 4.095 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.271 0.729 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 4.320 -31.344 31.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 H 0.137 0.863 4 C 0.304 3.696 5 O -0.386 6.386 6 O -0.269 6.269 7 C -0.003 4.003 8 C -0.139 4.139 9 C -0.233 4.233 10 S 0.022 5.978 11 C -0.653 4.653 12 H 0.107 0.893 13 C -0.116 4.116 14 N -0.516 5.516 15 Si 0.687 3.313 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.162 1.162 19 C -0.073 4.073 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.057 4.057 23 Cl -0.044 7.044 24 C -0.131 4.131 25 C -0.113 4.113 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.989 4.803 -31.083 31.704 hybrid contribution 0.681 -0.889 0.338 1.169 sum -3.308 3.914 -30.745 31.169 Atomic orbital electron populations 1.21823 0.90692 1.03493 1.04020 1.19956 0.98697 1.00319 0.87225 0.86306 1.23431 0.77897 0.83159 0.85100 1.90706 1.35025 1.25630 1.87284 1.86458 1.69625 1.55942 1.14891 1.23248 0.99175 0.95484 0.82355 1.21327 1.02348 1.00324 0.89907 1.22948 1.02961 1.01622 0.95771 1.84159 1.70731 1.43358 0.99566 1.22123 1.36816 1.14695 0.91668 0.89301 1.24794 0.94861 0.96433 0.95543 1.69938 1.42638 1.37267 1.01795 0.86669 0.80954 0.83845 0.79872 1.19318 1.20023 1.16152 1.19433 0.98346 0.94504 0.95016 1.20919 0.98514 0.93647 0.95922 1.21040 0.97720 1.00558 0.93617 1.20979 1.00454 0.93702 0.90612 1.98377 1.87725 1.79092 1.39198 1.20996 1.00835 0.92845 0.98471 1.20984 0.96553 1.00262 0.93480 0.91745 0.90234 0.90686 0.90987 0.90995 0.90241 0.90250 0.91024 0.90982 0.91908 0.85191 0.84772 0.84738 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.94 37.16 0.33 -0.53 16 2 C -0.04 -0.33 3.01 -92.92 -0.28 -0.61 16 3 H 0.12 0.67 7.88 -51.93 -0.41 0.26 16 4 C 0.46 5.25 7.12 36.01 0.26 5.51 16 5 O -0.50 -7.11 14.84 -18.75 -0.28 -7.39 16 6 O -0.35 -4.28 10.12 -39.25 -0.40 -4.67 16 7 C 0.07 0.95 5.47 37.16 0.20 1.16 16 8 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 9 C -0.08 -1.58 5.67 37.16 0.21 -1.37 16 10 S -0.21 -4.89 19.41 -107.50 -2.09 -6.98 16 11 C -0.51 -14.49 10.04 30.94 0.31 -14.18 16 12 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 13 C 0.09 2.67 5.50 -17.43 -0.10 2.57 16 14 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 15 Si 0.86 21.20 27.74 -169.99 -4.72 16.48 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 19 C -0.07 -0.60 4.40 -104.62 -0.46 -1.06 16 20 C -0.07 -0.63 7.92 -39.59 -0.31 -0.95 16 21 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 22 C -0.03 -0.26 6.32 -39.50 -0.25 -0.51 16 23 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 24 C -0.11 -0.84 9.83 -39.55 -0.39 -1.23 16 25 C -0.09 -0.68 9.67 -39.59 -0.38 -1.06 16 26 H 0.06 0.40 7.40 -51.93 -0.38 0.02 16 27 H 0.08 0.49 8.11 -51.93 -0.42 0.06 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 30 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.33 8.14 -51.91 -0.42 0.91 16 34 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.13 1.10 7.52 -52.48 -0.39 0.70 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.63 7.95 -52.48 -0.42 0.22 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -32.24 363.59 -9.53 -41.77 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.41 Total: -1.71 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.40 Total: -15.20 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.78 Total: -25.69 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.68 Total: -12.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.72 Total: 16.48 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -2.09 Total: -6.98 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.24 -9.53 -41.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845337500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.348 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds