Wall clock time and date at job start Tue Mar 31 2020 15:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47746 * 2 1 4 4 C 1.50702 * 109.46880 * 120.00453 * 2 1 3 5 5 O 1.20826 * 120.00303 * 119.99561 * 4 2 1 6 6 O 1.34228 * 119.99603 * 299.99284 * 4 2 1 7 7 C 1.45206 * 117.00001 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47091 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46891 * 179.97438 * 8 7 6 10 10 S 1.81002 * 109.46909 * 180.02562 * 9 8 7 11 11 C 1.76208 * 99.99928 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99585 * 0.02562 * 11 10 9 13 13 C 1.38798 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99499 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00412 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46805 * 89.99788 * 15 13 11 17 17 H 1.48495 * 109.47320 * 209.99905 * 15 13 11 18 18 H 1.48504 * 109.46786 * 329.99932 * 15 13 11 19 19 C 1.50704 * 109.46954 * 239.99340 * 2 1 3 20 20 C 1.38233 * 119.99169 * 299.73541 * 19 2 1 21 21 C 1.38214 * 120.01653 * 179.72574 * 20 19 2 22 22 C 1.38355 * 119.98313 * 0.54065 * 21 20 19 23 23 Cl 1.73601 * 120.01266 * 179.70633 * 22 21 20 24 24 C 1.38351 * 119.97349 * 359.73402 * 22 21 20 25 25 C 1.38209 * 119.98663 * 359.97438 * 24 22 21 26 26 H 1.08994 * 109.47746 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46635 * 300.00697 * 1 2 3 28 28 H 1.09007 * 109.46672 * 60.00013 * 1 2 3 29 29 H 1.09001 * 109.47157 * 299.99890 * 7 6 4 30 30 H 1.09004 * 109.47122 * 60.00023 * 7 6 4 31 31 H 1.08992 * 109.47056 * 300.00206 * 8 7 6 32 32 H 1.09004 * 109.47006 * 60.00090 * 8 7 6 33 33 H 1.09001 * 109.47372 * 300.00036 * 9 8 7 34 34 H 1.08996 * 109.47261 * 60.00575 * 9 8 7 35 35 H 0.97003 * 119.99835 * 180.02562 * 14 13 11 36 36 H 1.08010 * 119.99434 * 359.97438 * 20 19 2 37 37 H 1.07996 * 120.01223 * 180.27111 * 21 20 19 38 38 H 1.08000 * 120.00688 * 179.97438 * 24 22 21 39 39 H 1.08006 * 119.99581 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7269 -1.6930 1.1196 6 8 1.7081 -0.2519 2.4495 7 6 2.2276 -0.9858 3.5897 8 6 1.7565 -0.3185 4.8834 9 6 2.3035 -1.0922 6.0847 10 16 1.7456 -0.3033 7.6152 11 6 2.4989 -1.3677 8.8003 12 1 3.0933 -2.2072 8.4713 13 6 2.3292 -1.1264 10.1566 14 7 2.8924 -1.9213 11.0419 15 14 1.3017 0.3260 10.7256 16 1 -0.1134 -0.0979 10.8772 17 1 1.8147 0.8143 12.0308 18 1 1.3869 1.4164 9.7211 19 6 2.0323 -0.7106 -1.2304 20 6 1.7028 -2.0356 -1.4461 21 6 2.1585 -2.6862 -2.5772 22 6 2.9539 -2.0141 -3.4881 23 17 3.5330 -2.8327 -4.9053 24 6 3.2881 -0.6896 -3.2689 25 6 2.8268 -0.0384 -2.1405 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.8640 -2.0129 3.5569 30 1 3.3171 -0.9848 3.5566 31 1 2.1204 0.7084 4.9159 32 1 0.6670 -0.3192 4.9167 33 1 1.9392 -2.1191 6.0520 34 1 3.3929 -1.0920 6.0516 35 1 2.7735 -1.7530 11.9898 36 1 1.0857 -2.5616 -0.7325 37 1 1.8973 -3.7201 -2.7478 38 1 3.9094 -0.1646 -3.9794 39 1 3.0873 0.9957 -1.9694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845337500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:50 Heat of formation + Delta-G solvation = -108.027011 kcal Electronic energy + Delta-G solvation = -21651.120239 eV Core-core repulsion = 18095.369719 eV Total energy + Delta-G solvation = -3555.750520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.86121 -40.26131 -37.97153 -37.43069 -35.34330 -34.77104 -34.67529 -32.08820 -30.36687 -28.27412 -27.70828 -25.80218 -23.93252 -23.49394 -22.69305 -21.22680 -19.63066 -18.64783 -18.23548 -17.87168 -17.47491 -17.10625 -16.61581 -16.29950 -15.95675 -15.78415 -15.00490 -14.93745 -14.64031 -14.55787 -14.34962 -14.20887 -13.99175 -13.64476 -13.40425 -13.20638 -13.04772 -12.85841 -12.62014 -12.51565 -12.40403 -12.29399 -12.22419 -12.06211 -11.81377 -11.77056 -11.51269 -11.34070 -11.16832 -10.61050 -10.01463 -9.63774 -9.00898 -8.52372 -6.24711 0.02949 0.31406 1.06678 1.12104 1.13594 1.33169 1.45238 1.52743 1.85113 2.24663 2.62692 2.66478 2.85704 3.37688 3.60332 3.80163 3.83071 3.91718 3.96185 4.06500 4.11785 4.17994 4.28189 4.35398 4.46185 4.49569 4.64200 4.67928 4.85122 4.88234 4.96589 4.99230 5.09724 5.15917 5.22300 5.28517 5.43783 5.47827 5.68811 5.78154 6.09766 6.67339 6.91074 8.60663 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035246 B = 0.001731 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.228118 B =16175.335899 C =16641.912200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 H 0.147 0.853 4 C 0.462 3.538 5 O -0.532 6.532 6 O -0.350 6.350 7 C 0.078 3.922 8 C -0.087 4.087 9 C -0.075 4.075 10 S -0.204 6.204 11 C -0.528 4.528 12 H 0.050 0.950 13 C 0.037 3.963 14 N -0.922 5.922 15 Si 0.927 3.073 16 H -0.261 1.261 17 H -0.264 1.264 18 H -0.226 1.226 19 C -0.082 4.082 20 C -0.086 4.086 21 C -0.123 4.123 22 C -0.043 4.043 23 Cl -0.075 7.075 24 C -0.117 4.117 25 C -0.093 4.093 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.277 0.723 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 6.764 -32.812 33.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.054 4.054 3 H 0.165 0.835 4 C 0.305 3.695 5 O -0.421 6.421 6 O -0.267 6.267 7 C 0.003 3.997 8 C -0.125 4.125 9 C -0.224 4.224 10 S 0.024 5.976 11 C -0.675 4.675 12 H 0.068 0.932 13 C -0.168 4.168 14 N -0.560 5.560 15 Si 0.748 3.252 16 H -0.185 1.185 17 H -0.188 1.188 18 H -0.149 1.149 19 C -0.083 4.083 20 C -0.104 4.104 21 C -0.141 4.141 22 C -0.069 4.069 23 Cl -0.046 7.046 24 C -0.135 4.135 25 C -0.111 4.111 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.170 0.830 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.995 7.248 -32.568 33.736 hybrid contribution 1.055 -1.748 0.674 2.150 sum -3.940 5.500 -31.894 32.603 Atomic orbital electron populations 1.21843 0.89409 1.03448 1.05067 1.20096 0.99605 1.00947 0.84767 0.83540 1.24249 0.76991 0.82775 0.85448 1.90701 1.36664 1.27222 1.87540 1.86455 1.69550 1.55675 1.14996 1.22992 0.99027 0.95316 0.82365 1.21141 1.02605 1.00003 0.88764 1.22983 1.02938 1.01740 0.94707 1.83777 1.70414 1.42755 1.00640 1.22369 1.36778 1.14781 0.93583 0.93166 1.25814 0.96015 0.99382 0.95588 1.70045 1.44174 1.39310 1.02461 0.85694 0.79271 0.80338 0.79929 1.18507 1.18815 1.14905 1.19595 0.98737 0.94397 0.95531 1.21005 0.99008 0.94333 0.96055 1.21167 0.98103 1.01033 0.93834 1.21147 1.00785 0.94331 0.90674 1.98373 1.87729 1.79238 1.39228 1.21286 1.00741 0.92517 0.98979 1.21316 0.95480 1.01500 0.92763 0.92415 0.90034 0.88735 0.91092 0.91171 0.89478 0.89435 0.91202 0.91194 0.91378 0.85664 0.84296 0.82988 0.81951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.94 71.98 0.64 -0.71 16 2 C -0.04 -0.45 3.01 -12.28 -0.04 -0.49 16 3 H 0.15 1.07 7.88 -2.39 -0.02 1.05 16 4 C 0.46 9.73 7.12 71.24 0.51 10.23 16 5 O -0.53 -14.79 14.84 21.96 0.33 -14.46 16 6 O -0.35 -7.77 10.12 -51.40 -0.52 -8.29 16 7 C 0.08 1.95 5.47 71.98 0.39 2.34 16 8 C -0.09 -2.37 5.60 30.59 0.17 -2.20 16 9 C -0.08 -2.75 5.67 71.98 0.41 -2.34 16 10 S -0.20 -9.50 19.41 -56.49 -1.10 -10.59 16 11 C -0.53 -30.81 10.04 67.95 0.68 -30.13 16 12 H 0.05 3.20 8.03 -2.91 -0.02 3.18 16 13 C 0.04 2.14 5.50 84.86 0.47 2.61 16 14 N -0.92 -56.52 13.97 21.65 0.30 -56.21 16 15 Si 0.93 43.28 27.74 68.60 1.90 45.19 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.23 -10.04 6.74 99.48 0.67 -9.37 16 19 C -0.08 -1.20 4.40 -19.86 -0.09 -1.29 16 20 C -0.09 -1.46 7.92 22.26 0.18 -1.28 16 21 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 22 C -0.04 -0.68 6.32 22.32 0.14 -0.54 16 23 Cl -0.07 -1.15 28.96 -2.72 -0.08 -1.23 16 24 C -0.12 -1.52 9.83 22.29 0.22 -1.30 16 25 C -0.09 -1.09 9.67 22.26 0.22 -0.87 16 26 H 0.06 0.64 7.40 -2.39 -0.02 0.62 16 27 H 0.08 0.77 8.11 -2.39 -0.02 0.76 16 28 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.07 1.78 8.13 -2.38 -0.02 1.76 16 31 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.07 2.58 8.14 -2.40 -0.02 2.56 16 34 H 0.07 2.59 8.14 -2.40 -0.02 2.57 16 35 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.13 2.15 7.52 -2.91 -0.02 2.12 16 37 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.16 0.90 7.95 -2.91 -0.02 0.88 16 Total: -1.00 -70.27 363.59 5.96 -64.30 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.01 Total: 9.10 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 4.12 Total: -27.80 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.30 Total: -56.21 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.19 Total: -22.76 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.90 Total: 45.19 kcal Atomic # 16 Polarization: -9.50 SS G_CDS: -1.10 Total: -10.59 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -70.27 5.96 -64.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845337500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.722 kcal (2) G-P(sol) polarization free energy of solvation -70.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds