Wall clock time and date at job start Tue Mar 31 2020 15:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50698 * 109.46804 * 239.99888 * 2 1 3 5 5 O 1.20825 * 119.99716 * 239.99750 * 4 2 1 6 6 O 1.34223 * 120.00243 * 60.00250 * 4 2 1 7 7 C 1.45202 * 117.00045 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47065 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47316 * 180.02562 * 8 7 6 10 10 S 1.81000 * 109.47347 * 180.02562 * 9 8 7 11 11 C 1.76197 * 99.99989 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99901 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00195 * 179.97438 * 11 10 9 14 14 N 1.31627 * 119.99676 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99989 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47014 * 90.00349 * 15 13 11 17 17 H 1.48505 * 109.47130 * 210.00072 * 15 13 11 18 18 H 1.48496 * 109.47319 * 330.00251 * 15 13 11 19 19 C 1.50696 * 109.46861 * 119.99921 * 2 1 3 20 20 C 1.38246 * 119.98618 * 240.00049 * 19 2 1 21 21 C 1.38216 * 120.01497 * 180.02562 * 20 19 2 22 22 C 1.38357 * 119.98603 * 359.97165 * 21 20 19 23 23 Cl 1.73599 * 120.01134 * 180.02562 * 22 21 20 24 24 C 1.38347 * 119.97107 * 0.28224 * 22 21 20 25 25 C 1.38217 * 119.98914 * 359.48757 * 24 22 21 26 26 H 1.08998 * 109.46759 * 300.00461 * 1 2 3 27 27 H 1.09001 * 109.46784 * 60.00408 * 1 2 3 28 28 H 1.09001 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47080 * 299.99608 * 7 6 4 30 30 H 1.08997 * 109.47208 * 60.00015 * 7 6 4 31 31 H 1.08997 * 109.47643 * 300.00026 * 8 7 6 32 32 H 1.09001 * 109.47523 * 59.99960 * 8 7 6 33 33 H 1.09010 * 109.46720 * 300.00218 * 9 8 7 34 34 H 1.09001 * 109.46870 * 59.99545 * 9 8 7 35 35 H 0.97002 * 119.99817 * 180.02562 * 14 13 11 36 36 H 1.08003 * 119.99321 * 359.97438 * 20 19 2 37 37 H 1.08002 * 120.00776 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00661 * 179.71600 * 24 22 21 39 39 H 1.07996 * 119.99353 * 180.23044 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.2277 -0.9858 -3.5896 8 6 1.7556 -0.3194 -4.8833 9 6 2.3025 -1.0931 -6.0847 10 16 1.7446 -0.3043 -7.6152 11 6 2.4980 -1.3686 -8.8002 12 1 3.0924 -2.2081 -8.4712 13 6 2.3274 -1.1282 -10.1565 14 7 1.6033 -0.1047 -10.5575 15 14 3.1268 -2.2561 -11.4128 16 1 2.1962 -3.3645 -11.7456 17 1 3.4382 -1.4850 -12.6431 18 1 4.3812 -2.8155 -10.8484 19 6 2.0323 -0.7104 1.2305 20 6 2.8271 -0.0383 2.1403 21 6 3.2885 -0.6894 3.2688 22 6 2.9544 -2.0140 3.4881 23 17 3.5330 -2.8322 4.9056 24 6 2.1633 -2.6876 2.5745 25 6 1.6986 -2.0340 1.4488 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.3172 -0.9847 -3.5565 30 1 1.8642 -2.0129 -3.5568 31 1 0.6661 -0.3208 -4.9163 32 1 2.1186 0.7078 -4.9164 33 1 3.3921 -1.0921 -6.0520 34 1 1.9390 -2.1202 -6.0513 35 1 1.4838 0.0631 -11.5054 36 1 3.0882 0.9956 1.9688 37 1 3.9097 -0.1643 3.9793 38 1 1.9060 -3.7229 2.7428 39 1 1.0780 -2.5587 0.7375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845337501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:53 Heat of formation + Delta-G solvation = -108.089588 kcal Electronic energy + Delta-G solvation = -21613.817303 eV Core-core repulsion = 18058.064069 eV Total energy + Delta-G solvation = -3555.753233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85933 -40.25991 -37.96587 -37.42745 -35.33495 -34.76133 -34.56410 -32.08637 -30.36298 -28.24990 -27.50796 -25.78935 -23.92699 -23.47626 -22.66821 -21.22022 -19.57484 -18.64852 -18.23298 -17.86449 -17.46213 -16.90304 -16.61129 -16.30738 -15.92838 -15.82023 -15.02872 -14.96176 -14.55346 -14.47057 -14.29869 -14.10478 -13.81908 -13.62855 -13.29584 -13.09819 -12.95500 -12.85460 -12.63813 -12.51705 -12.40725 -12.38956 -12.24837 -12.07523 -11.79777 -11.61982 -11.50789 -11.29827 -11.15478 -10.36727 -10.01270 -9.63570 -8.68277 -8.38724 -6.15056 0.03152 0.31543 1.12056 1.13414 1.27867 1.39171 1.43810 1.52736 1.85280 2.26496 2.63820 2.95870 3.27790 3.38321 3.61670 3.81265 3.84513 3.91899 3.98577 4.06752 4.15269 4.17964 4.32061 4.35523 4.46193 4.51715 4.66780 4.68834 4.84925 4.87827 4.96765 5.01794 5.12331 5.15848 5.22378 5.28464 5.39369 5.44565 5.48155 5.78196 6.17119 6.67387 7.03928 8.70531 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030558 B = 0.001704 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.085032 B =16425.790229 C =17014.429543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 H 0.146 0.854 4 C 0.462 3.538 5 O -0.532 6.532 6 O -0.352 6.352 7 C 0.081 3.919 8 C -0.085 4.085 9 C -0.093 4.093 10 S -0.182 6.182 11 C -0.542 4.542 12 H 0.073 0.927 13 C 0.017 3.983 14 N -0.905 5.905 15 Si 0.993 3.007 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.264 1.264 19 C -0.082 4.082 20 C -0.093 4.093 21 C -0.116 4.116 22 C -0.043 4.043 23 Cl -0.074 7.074 24 C -0.122 4.122 25 C -0.086 4.086 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.272 0.728 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.140 0.860 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 0.386 30.735 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.164 0.836 4 C 0.305 3.695 5 O -0.421 6.421 6 O -0.269 6.269 7 C 0.005 3.995 8 C -0.123 4.123 9 C -0.242 4.242 10 S 0.046 5.954 11 C -0.690 4.690 12 H 0.091 0.909 13 C -0.188 4.188 14 N -0.542 5.542 15 Si 0.815 3.185 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.188 1.188 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.069 4.069 23 Cl -0.045 7.045 24 C -0.141 4.141 25 C -0.104 4.104 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.180 0.820 37 H 0.170 0.830 38 H 0.158 0.842 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.748 1.034 30.533 30.559 hybrid contribution 1.353 -2.094 -0.815 2.623 sum 0.605 -1.060 29.717 29.742 Atomic orbital electron populations 1.21844 0.89456 1.03460 1.05019 1.20094 0.99586 1.00947 0.84848 0.83628 1.24242 0.77000 0.82783 0.85431 1.90690 1.36657 1.27190 1.87549 1.86464 1.69566 1.55749 1.15071 1.23000 0.98970 0.95264 0.82229 1.21096 1.02214 0.99857 0.89180 1.23081 1.02708 1.01897 0.96492 1.84597 1.69861 1.42734 0.98170 1.23062 1.37172 1.15392 0.93389 0.90859 1.26041 0.95550 0.97329 0.99910 1.70139 1.38393 1.28849 1.16786 0.85027 0.78650 0.77842 0.76966 1.19300 1.19853 1.18847 1.19584 0.98720 0.94450 0.95447 1.21313 0.95532 1.01476 0.92778 1.21287 1.00702 0.92547 0.98941 1.21141 1.00836 0.94296 0.90650 1.98372 1.87752 1.79248 1.39157 1.21164 0.98067 1.01001 0.93835 1.21005 0.98960 0.94296 0.96149 0.88682 0.90198 0.92358 0.91096 0.91021 0.90106 0.90146 0.91498 0.91438 0.91884 0.82013 0.82968 0.84244 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.94 71.98 0.64 -0.88 16 2 C -0.04 -0.50 3.01 -12.29 -0.04 -0.53 16 3 H 0.15 1.24 7.88 -2.39 -0.02 1.22 16 4 C 0.46 10.25 7.12 71.24 0.51 10.76 16 5 O -0.53 -15.14 14.86 21.97 0.33 -14.81 16 6 O -0.35 -8.44 10.12 -51.35 -0.52 -8.96 16 7 C 0.08 2.15 5.47 71.98 0.39 2.54 16 8 C -0.09 -2.60 5.60 30.59 0.17 -2.43 16 9 C -0.09 -3.60 5.67 71.98 0.41 -3.20 16 10 S -0.18 -9.48 21.44 -56.49 -1.21 -10.69 16 11 C -0.54 -31.00 9.50 67.95 0.65 -30.35 16 12 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 13 C 0.02 0.95 5.49 84.86 0.47 1.42 16 14 N -0.91 -53.97 13.22 21.65 0.29 -53.69 16 15 Si 0.99 43.58 29.55 68.60 2.03 45.60 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 C -0.08 -1.25 4.40 -19.86 -0.09 -1.34 16 20 C -0.09 -1.14 9.67 22.27 0.22 -0.93 16 21 C -0.12 -1.55 9.83 22.29 0.22 -1.33 16 22 C -0.04 -0.69 6.32 22.32 0.14 -0.55 16 23 Cl -0.07 -1.15 28.96 -2.72 -0.08 -1.23 16 24 C -0.12 -2.06 9.83 22.29 0.22 -1.84 16 25 C -0.09 -1.50 7.93 22.27 0.18 -1.32 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.88 8.11 -2.39 -0.02 0.87 16 28 H 0.06 0.70 7.39 -2.39 -0.02 0.68 16 29 H 0.07 1.89 8.13 -2.38 -0.02 1.87 16 30 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.16 1.01 7.95 -2.91 -0.02 0.99 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.13 2.20 7.52 -2.91 -0.02 2.18 16 Total: -1.00 -69.65 366.29 5.96 -63.69 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.04 Total: 10.06 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 4.08 Total: -29.98 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.29 Total: -53.69 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.19 Total: -23.78 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.21 Total: -10.69 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -69.65 5.96 -63.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845337501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.399 kcal (2) G-P(sol) polarization free energy of solvation -69.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds