Wall clock time and date at job start Tue Mar 31 2020 15:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99955 * 2 1 4 4 H 1.48491 * 109.47504 * 269.99679 * 3 2 1 5 5 H 1.48508 * 109.46924 * 29.99961 * 3 2 1 6 6 H 1.48499 * 109.47247 * 149.99298 * 3 2 1 7 7 C 1.37874 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99987 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00134 * 180.02562 * 7 2 1 10 10 C 1.53118 * 109.52433 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.27757 * 177.55965 * 10 9 7 12 12 N 1.46848 * 109.52488 * 300.81819 * 11 10 9 13 13 C 1.39815 * 111.00002 * 185.84054 * 12 11 10 14 14 C 1.38881 * 120.04605 * 299.99928 * 13 12 11 15 15 C 1.38192 * 119.94015 * 180.02562 * 14 13 12 16 16 Cl 1.73610 * 119.98899 * 180.02562 * 15 14 13 17 17 C 1.38602 * 120.02842 * 0.02562 * 15 14 13 18 18 F 1.35094 * 119.96054 * 180.02562 * 17 15 14 19 19 C 1.38414 * 120.08402 * 359.97438 * 17 15 14 20 20 C 1.38163 * 120.06093 * 359.72477 * 19 17 15 21 21 N 1.48012 * 120.01406 * 180.30348 * 20 19 17 22 22 O 1.21804 * 119.99550 * 0.24615 * 21 20 19 23 23 O 1.21794 * 120.00183 * 180.25180 * 21 20 19 24 24 C 1.46847 * 111.19556 * 61.74410 * 12 11 10 25 25 C 1.53045 * 109.52201 * 298.25548 * 24 12 11 26 26 H 0.97000 * 119.99945 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.57211 * 59.83884 * 9 7 2 28 28 H 1.08994 * 109.50107 * 57.61330 * 10 9 7 29 29 H 1.09007 * 109.50172 * 297.50066 * 10 9 7 30 30 H 1.09000 * 109.46027 * 180.80474 * 11 10 9 31 31 H 1.09003 * 109.46542 * 60.83856 * 11 10 9 32 32 H 1.08003 * 120.02730 * 359.97438 * 14 13 12 33 33 H 1.07996 * 119.96699 * 179.97438 * 19 17 15 34 34 H 1.08999 * 109.46628 * 58.27319 * 24 12 11 35 35 H 1.09000 * 109.46003 * 178.24905 * 24 12 11 36 36 H 1.08996 * 109.50396 * 299.23993 * 25 24 12 37 37 H 1.09004 * 109.50173 * 179.11701 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.3999 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0233 -2.6372 0.0010 11 6 5.5524 -2.6310 -0.0599 12 7 5.9923 -1.9367 -1.2768 13 6 7.3789 -2.0270 -1.4317 14 6 8.2226 -1.5117 -0.4563 15 6 9.5928 -1.6016 -0.6118 16 17 10.6486 -0.9585 0.6071 17 6 10.1245 -2.2051 -1.7406 18 9 11.4642 -2.2927 -1.8910 19 6 9.2847 -2.7190 -2.7134 20 6 7.9143 -2.6366 -2.5586 21 7 7.0172 -3.1925 -3.5964 22 8 7.4871 -3.7267 -4.5850 23 8 5.8091 -3.1156 -3.4619 24 6 5.5529 -0.5355 -1.2769 25 6 4.0236 -0.4791 -1.2524 26 1 -0.4850 0.8400 -0.0004 27 1 3.8763 -0.6778 0.8891 28 1 3.6265 -3.1638 -0.8669 29 1 3.6973 -3.1389 0.9122 30 1 5.9194 -3.6573 -0.0746 31 1 5.9487 -2.1162 0.8154 32 1 7.8081 -1.0404 0.4227 33 1 9.7011 -3.1885 -3.5924 34 1 5.9491 -0.0305 -0.3960 35 1 5.9201 -0.0398 -2.1755 36 1 3.6270 -0.9718 -2.1400 37 1 3.6981 0.5611 -1.2366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845513105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:34 Heat of formation + Delta-G solvation = -4.578850 kcal Electronic energy + Delta-G solvation = -26159.479357 eV Core-core repulsion = 22074.294261 eV Total energy + Delta-G solvation = -4085.185096 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.65734 -42.18494 -40.44709 -38.29275 -37.20592 -36.35868 -34.32301 -32.29661 -31.94689 -30.51436 -29.73070 -26.78422 -25.83189 -23.82163 -22.85715 -22.58979 -21.51849 -19.65737 -19.12357 -18.64451 -17.69449 -17.45276 -17.13690 -17.08929 -16.75993 -16.42871 -15.26430 -14.93060 -14.89751 -14.52967 -13.97453 -13.70311 -13.64610 -13.09769 -13.06542 -12.90592 -12.50831 -12.19397 -11.97398 -11.90212 -11.68090 -11.40187 -11.11222 -10.97195 -10.91038 -10.76009 -10.25797 -10.06663 -9.94614 -9.76028 -9.42922 -9.19258 -9.05089 -8.59072 -8.53168 -6.09189 -4.08059 -0.58307 0.11338 1.07245 1.09590 1.36096 2.46865 3.18000 3.22071 3.29244 3.30829 3.37543 3.73566 4.09512 4.33848 4.36708 4.57059 4.71563 4.96405 5.05102 5.16684 5.21033 5.30271 5.49494 5.55159 5.61631 5.82700 5.89728 6.15068 6.25118 6.34698 6.57846 6.61325 6.76338 7.03317 7.04901 7.18671 7.52309 7.73233 7.76123 8.50545 8.96155 9.52915 11.04383 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.004080 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.577178 B = 6861.282605 C = 8016.694149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.014 3.986 10 C -0.095 4.095 11 C 0.061 3.939 12 N -0.490 5.490 13 C 0.175 3.825 14 C -0.120 4.120 15 C -0.020 4.020 16 Cl -0.024 7.024 17 C 0.102 3.898 18 F -0.112 7.112 19 C -0.077 4.077 20 C -0.002 4.002 21 N 0.023 4.977 22 O -0.197 6.197 23 O -0.065 6.065 24 C 0.062 3.938 25 C -0.116 4.116 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.419 -3.067 -1.186 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.094 0.906 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.064 4.064 12 N -0.212 5.212 13 C 0.078 3.922 14 C -0.141 4.141 15 C -0.049 4.049 16 Cl 0.006 6.994 17 C 0.081 3.919 18 F -0.090 7.090 19 C -0.098 4.098 20 C -0.087 4.087 21 N 0.548 4.452 22 O -0.399 6.399 23 O -0.301 6.301 24 C -0.063 4.063 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.183 0.817 33 H 0.193 0.807 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.710 -2.901 -1.040 22.918 hybrid contribution 1.018 1.354 0.445 1.752 sum 23.728 -1.546 -0.595 23.786 Atomic orbital electron populations 1.69891 1.06263 1.26872 1.50799 1.25016 0.94648 0.98888 0.94601 0.86905 0.79780 0.83963 0.77888 1.20486 1.22517 1.19355 1.21007 0.88583 0.94529 1.50633 0.90635 1.19198 0.97035 0.91715 0.92558 1.21522 0.89765 0.99744 1.02239 1.22395 0.99639 0.97119 0.87277 1.60006 1.03267 1.17083 1.40878 1.18785 0.92137 0.91200 0.90047 1.21781 0.90316 1.00668 1.01360 1.21268 0.92563 0.99501 0.91589 1.98442 1.64681 1.83996 1.52315 1.16819 0.78474 1.02306 0.94297 1.91609 1.27825 1.94153 1.95445 1.20777 0.90493 0.98383 1.00124 1.20941 0.89597 1.06099 0.92029 1.43190 1.01914 0.99440 1.00675 1.94533 1.80171 1.45428 1.19741 1.94730 0.94849 1.58098 1.82437 1.22375 0.99728 0.84320 0.99906 1.22092 0.89797 1.00550 1.02952 0.92667 0.95985 0.90698 0.91657 0.91388 0.94468 0.81724 0.80734 0.94549 0.91565 0.90092 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 3 Si 0.88 20.95 24.36 -169.99 -4.14 16.81 16 4 H -0.28 -6.43 6.89 56.52 0.39 -6.04 16 5 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -5.95 6.53 56.52 0.37 -5.58 16 7 C -0.51 -13.56 9.14 -34.44 -0.31 -13.88 16 8 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.09 -1.70 5.32 -26.65 -0.14 -1.84 16 11 C 0.06 0.87 5.12 -3.83 -0.02 0.85 16 12 N -0.49 -7.18 2.50 -171.13 -0.43 -7.61 16 13 C 0.18 2.15 4.67 -83.75 -0.39 1.76 16 14 C -0.12 -1.21 8.48 -39.36 -0.33 -1.54 16 15 C -0.02 -0.19 6.32 -39.46 -0.25 -0.44 16 16 Cl -0.02 -0.21 28.61 -51.86 -1.48 -1.69 16 17 C 0.10 0.95 7.27 -39.38 -0.29 0.66 16 18 F -0.11 -1.04 16.83 2.25 0.04 -1.00 16 19 C -0.08 -0.75 9.53 -39.54 -0.38 -1.13 16 20 C 0.00 -0.03 6.87 -79.75 -0.55 -0.57 16 21 N 0.02 0.34 4.45 34.06 0.15 0.49 16 22 O -0.20 -2.95 18.45 -29.46 -0.54 -3.49 16 23 O -0.06 -1.10 17.09 -29.46 -0.50 -1.60 16 24 C 0.06 0.97 5.17 -3.83 -0.02 0.95 16 25 C -0.12 -2.31 4.84 -26.65 -0.13 -2.43 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.48 7.19 -51.93 -0.37 0.11 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.07 0.89 8.11 -51.93 -0.42 0.46 16 31 H 0.04 0.49 7.33 -51.93 -0.38 0.10 16 32 H 0.17 1.51 7.13 -52.48 -0.37 1.13 16 33 H 0.18 1.41 7.61 -52.49 -0.40 1.01 16 34 H 0.04 0.53 7.55 -51.93 -0.39 0.14 16 35 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.05 1.13 3.38 -51.93 -0.18 0.96 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -28.93 323.85 -8.13 -37.06 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -3.80 Total: -2.10 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -3.07 Total: -15.63 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.50 Total: -33.23 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -1.05 Total: -5.09 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.14 Total: 16.81 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.48 Total: -1.69 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.93 -8.13 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845513105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.479 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds