Wall clock time and date at job start Tue Mar 31 2020 15:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99955 * 2 1 4 4 H 1.48491 * 109.47504 * 269.99679 * 3 2 1 5 5 H 1.48508 * 109.46924 * 29.99961 * 3 2 1 6 6 H 1.48499 * 109.47247 * 149.99298 * 3 2 1 7 7 C 1.37874 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99987 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00134 * 180.02562 * 7 2 1 10 10 C 1.53118 * 109.52433 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.27757 * 177.55965 * 10 9 7 12 12 N 1.46848 * 109.52488 * 300.81819 * 11 10 9 13 13 C 1.39815 * 111.00002 * 185.84054 * 12 11 10 14 14 C 1.38881 * 120.04605 * 299.99928 * 13 12 11 15 15 C 1.38192 * 119.94015 * 180.02562 * 14 13 12 16 16 Cl 1.73610 * 119.98899 * 180.02562 * 15 14 13 17 17 C 1.38602 * 120.02842 * 0.02562 * 15 14 13 18 18 F 1.35094 * 119.96054 * 180.02562 * 17 15 14 19 19 C 1.38414 * 120.08402 * 359.97438 * 17 15 14 20 20 C 1.38163 * 120.06093 * 359.72477 * 19 17 15 21 21 N 1.48012 * 120.01406 * 180.30348 * 20 19 17 22 22 O 1.21804 * 119.99550 * 0.24615 * 21 20 19 23 23 O 1.21794 * 120.00183 * 180.25180 * 21 20 19 24 24 C 1.46847 * 111.19556 * 61.74410 * 12 11 10 25 25 C 1.53045 * 109.52201 * 298.25548 * 24 12 11 26 26 H 0.97000 * 119.99945 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.57211 * 59.83884 * 9 7 2 28 28 H 1.08994 * 109.50107 * 57.61330 * 10 9 7 29 29 H 1.09007 * 109.50172 * 297.50066 * 10 9 7 30 30 H 1.09000 * 109.46027 * 180.80474 * 11 10 9 31 31 H 1.09003 * 109.46542 * 60.83856 * 11 10 9 32 32 H 1.08003 * 120.02730 * 359.97438 * 14 13 12 33 33 H 1.07996 * 119.96699 * 179.97438 * 19 17 15 34 34 H 1.08999 * 109.46628 * 58.27319 * 24 12 11 35 35 H 1.09000 * 109.46003 * 178.24905 * 24 12 11 36 36 H 1.08996 * 109.50396 * 299.23993 * 25 24 12 37 37 H 1.09004 * 109.50173 * 179.11701 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.3999 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0233 -2.6372 0.0010 11 6 5.5524 -2.6310 -0.0599 12 7 5.9923 -1.9367 -1.2768 13 6 7.3789 -2.0270 -1.4317 14 6 8.2226 -1.5117 -0.4563 15 6 9.5928 -1.6016 -0.6118 16 17 10.6486 -0.9585 0.6071 17 6 10.1245 -2.2051 -1.7406 18 9 11.4642 -2.2927 -1.8910 19 6 9.2847 -2.7190 -2.7134 20 6 7.9143 -2.6366 -2.5586 21 7 7.0172 -3.1925 -3.5964 22 8 7.4871 -3.7267 -4.5850 23 8 5.8091 -3.1156 -3.4619 24 6 5.5529 -0.5355 -1.2769 25 6 4.0236 -0.4791 -1.2524 26 1 -0.4850 0.8400 -0.0004 27 1 3.8763 -0.6778 0.8891 28 1 3.6265 -3.1638 -0.8669 29 1 3.6973 -3.1389 0.9122 30 1 5.9194 -3.6573 -0.0746 31 1 5.9487 -2.1162 0.8154 32 1 7.8081 -1.0404 0.4227 33 1 9.7011 -3.1885 -3.5924 34 1 5.9491 -0.0305 -0.3960 35 1 5.9201 -0.0398 -2.1755 36 1 3.6270 -0.9718 -2.1400 37 1 3.6981 0.5611 -1.2366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845513105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:33 Heat of formation + Delta-G solvation = -19.833793 kcal Electronic energy + Delta-G solvation = -26160.140861 eV Core-core repulsion = 22074.294261 eV Total energy + Delta-G solvation = -4085.846600 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.39061 -43.23277 -41.46033 -39.39133 -37.98497 -37.49396 -35.83454 -33.79769 -33.14399 -31.86017 -30.85751 -28.06859 -27.15187 -24.92778 -24.20822 -23.69907 -22.82331 -20.61815 -20.54574 -19.70879 -18.80565 -18.63974 -18.49286 -18.01754 -17.97699 -17.17798 -16.67796 -16.06864 -15.87219 -15.67790 -15.17436 -14.88782 -14.81753 -14.54800 -14.38902 -14.03549 -13.74887 -13.50813 -13.27841 -12.99566 -12.74934 -12.57241 -12.42373 -12.21729 -12.20468 -12.10489 -12.08808 -11.70462 -11.41775 -10.97952 -10.90430 -10.73182 -10.61552 -10.22259 -9.63273 -8.24421 -6.27772 -1.52650 -0.67189 0.03322 0.23098 0.51924 1.33359 1.37290 1.48093 1.63163 2.26786 2.36359 2.46736 2.96110 3.11175 3.29396 3.41303 3.75688 3.86883 4.03429 4.08688 4.11201 4.21794 4.28417 4.39498 4.50624 4.60152 4.70805 4.77859 4.84303 4.93816 5.10804 5.20572 5.28426 5.56534 5.69284 5.77699 5.83619 6.01084 6.38345 6.57031 6.80106 7.37213 8.93036 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.004080 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.577178 B = 6861.282605 C = 8016.694149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.304 1.304 6 H -0.235 1.235 7 C -0.514 4.514 8 H 0.029 0.971 9 C 0.014 3.986 10 C -0.091 4.091 11 C 0.070 3.930 12 N -0.506 5.506 13 C 0.167 3.833 14 C -0.109 4.109 15 C -0.011 4.011 16 Cl -0.011 7.011 17 C 0.113 3.887 18 F -0.108 7.108 19 C -0.064 4.064 20 C -0.011 4.011 21 N 0.027 4.973 22 O -0.185 6.185 23 O -0.127 6.127 24 C 0.070 3.930 25 C -0.113 4.113 26 H 0.263 0.737 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.181 0.819 33 H 0.192 0.808 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.951 -2.056 -0.488 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.232 1.232 6 H -0.158 1.158 7 C -0.552 4.552 8 H 0.048 0.952 9 C -0.005 4.005 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.228 5.228 13 C 0.070 3.930 14 C -0.130 4.130 15 C -0.040 4.040 16 Cl 0.018 6.982 17 C 0.092 3.908 18 F -0.086 7.086 19 C -0.085 4.085 20 C -0.096 4.096 21 N 0.547 4.453 22 O -0.394 6.394 23 O -0.349 6.349 24 C -0.055 4.055 25 C -0.151 4.151 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.199 0.801 33 H 0.210 0.790 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 27.183 -1.892 -0.303 27.251 hybrid contribution -0.265 0.906 0.207 0.966 sum 26.919 -0.986 -0.096 26.937 Atomic orbital electron populations 1.70071 1.08453 1.27856 1.53217 1.25937 0.95378 1.03170 0.94396 0.85852 0.79539 0.78504 0.78576 1.19553 1.23184 1.15836 1.21399 0.91795 0.92738 1.49295 0.95216 1.19156 0.93324 0.94328 0.93653 1.21373 0.93046 0.97218 1.01230 1.22255 0.96324 0.98607 0.88303 1.59731 1.05357 1.16493 1.41234 1.18656 0.90936 0.92544 0.90824 1.21783 0.90194 1.00009 1.00994 1.21282 0.92521 0.98597 0.91602 1.98461 1.64227 1.83688 1.51780 1.16753 0.78488 1.01611 0.93962 1.91633 1.27565 1.94033 1.95390 1.20887 0.89294 0.97592 1.00688 1.20966 0.89877 1.07284 0.91442 1.43538 1.02001 0.98837 1.00957 1.94493 1.79965 1.44560 1.20361 1.94755 0.96064 1.60682 1.83434 1.22197 0.96192 0.85509 1.01606 1.21876 0.93399 0.99107 1.00728 0.92789 0.95119 0.93121 0.91635 0.89815 0.91988 0.80129 0.79044 0.92219 0.90403 0.92525 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.01 0.42 5.45 84.65 0.46 0.88 16 3 Si 0.95 43.19 24.36 68.60 1.67 44.86 16 4 H -0.27 -11.80 6.89 99.48 0.69 -11.11 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.24 -9.35 6.53 99.48 0.65 -8.70 16 7 C -0.51 -28.56 9.14 25.60 0.23 -28.33 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C 0.01 0.61 1.75 -11.46 -0.02 0.59 16 10 C -0.09 -3.26 5.32 30.65 0.16 -3.10 16 11 C 0.07 1.85 5.12 86.32 0.44 2.29 16 12 N -0.51 -13.74 2.50 -695.32 -1.74 -15.47 16 13 C 0.17 3.57 4.67 38.17 0.18 3.75 16 14 C -0.11 -1.70 8.48 22.41 0.19 -1.51 16 15 C -0.01 -0.16 6.32 22.35 0.14 -0.01 16 16 Cl -0.01 -0.15 28.61 -2.72 -0.08 -0.22 16 17 C 0.11 1.63 7.27 22.40 0.16 1.79 16 18 F -0.11 -1.55 16.83 44.97 0.76 -0.80 16 19 C -0.06 -1.02 9.53 22.29 0.21 -0.81 16 20 C -0.01 -0.24 6.87 36.51 0.25 0.01 16 21 N 0.03 0.78 4.45 -46.15 -0.21 0.58 16 22 O -0.19 -5.27 18.45 18.88 0.35 -4.93 16 23 O -0.13 -4.35 17.09 18.89 0.32 -4.03 16 24 C 0.07 2.01 5.17 86.33 0.45 2.45 16 25 C -0.11 -4.41 4.84 30.65 0.15 -4.26 16 26 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.03 1.27 7.19 -2.39 -0.02 1.25 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 31 H 0.06 1.35 7.33 -2.39 -0.02 1.33 16 32 H 0.18 2.30 7.13 -2.91 -0.02 2.28 16 33 H 0.19 2.37 7.61 -2.91 -0.02 2.34 16 34 H 0.06 1.45 7.55 -2.39 -0.02 1.43 16 35 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.04 1.78 3.38 -2.38 -0.01 1.77 16 Total: -1.00 -66.66 323.85 5.44 -61.23 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.05 Total: 4.50 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 3.01 Total: -26.26 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.64 Total: -74.36 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.67 Total: -8.96 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.76 Total: -0.80 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.67 Total: 44.86 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.22 kcal Total: -66.66 5.44 -61.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845513105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.392 kcal (2) G-P(sol) polarization free energy of solvation -66.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds