Wall clock time and date at job start Tue Mar 31 2020 15:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 S 1.49357 * 120.00071 * 2 1 4 4 C 1.81394 * 108.33432 * 297.53476 * 3 2 1 5 5 O 1.42102 * 108.32827 * 62.46922 * 3 2 1 6 6 C 1.76198 * 108.73395 * 179.97438 * 3 2 1 7 7 C 1.38299 * 119.96413 * 87.55746 * 6 3 2 8 8 C 1.38265 * 120.14323 * 179.97438 * 7 6 3 9 9 C 1.38135 * 120.06892 * 359.76135 * 8 7 6 10 10 C 1.38852 * 119.92476 * 0.51358 * 9 8 7 11 11 N 1.39926 * 120.06714 * 179.74309 * 10 9 8 12 12 C 1.34776 * 120.00097 * 214.81171 * 11 10 9 13 13 O 1.21293 * 119.99757 * 355.36936 * 12 11 10 14 14 C 1.50705 * 120.00457 * 175.37689 * 12 11 10 15 15 S 1.80998 * 109.47100 * 179.97438 * 14 12 11 16 16 C 1.76209 * 99.99777 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99721 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31635 * 120.00097 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46920 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46750 * 120.00413 * 20 18 16 23 23 H 1.48497 * 109.47155 * 240.00120 * 20 18 16 24 24 C 1.38090 * 119.96672 * 267.53187 * 6 3 2 25 25 H 1.09002 * 109.47603 * 299.99615 * 1 2 3 26 26 H 1.09002 * 109.47604 * 59.99823 * 1 2 3 27 27 H 1.08999 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47013 * 301.10475 * 4 3 2 29 29 H 1.08998 * 109.47322 * 61.09996 * 4 3 2 30 30 H 1.08994 * 109.47617 * 181.10452 * 4 3 2 31 31 H 1.07998 * 119.93282 * 359.97438 * 7 6 3 32 32 H 1.07995 * 119.96632 * 180.02562 * 8 7 6 33 33 H 1.07994 * 120.03798 * 180.27130 * 9 8 7 34 34 H 0.96997 * 120.00517 * 34.80871 * 11 10 9 35 35 H 1.09000 * 109.47142 * 59.99391 * 14 12 11 36 36 H 1.09005 * 109.46453 * 299.99544 * 14 12 11 37 37 H 0.96998 * 119.99766 * 179.97438 * 19 18 16 38 38 H 1.08008 * 120.03402 * 0.02562 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2117 1.2935 0.0000 4 6 1.8076 2.1856 -1.5268 5 8 1.8951 1.9922 1.1962 6 6 3.9397 0.9492 0.0007 7 6 4.6076 0.7639 -1.1960 8 6 5.9637 0.4941 -1.1998 9 6 6.6567 0.4137 -0.0075 10 6 5.9878 0.5936 1.1959 11 7 6.6859 0.5074 2.4056 12 6 6.0846 -0.0099 3.4952 13 8 4.9136 -0.3231 3.4505 14 6 6.8670 -0.1992 4.7693 15 16 5.7894 -0.9070 6.0396 16 6 6.9283 -1.0186 7.3795 17 1 7.9495 -0.6922 7.2487 18 6 6.5130 -1.5259 8.6028 19 7 5.2685 -1.9241 8.7620 20 14 7.7206 -1.6449 10.0231 21 1 9.0467 -1.1364 9.5892 22 1 7.2269 -0.8300 11.1621 23 1 7.8480 -3.0623 10.4471 24 6 4.6258 0.8652 1.1962 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.0836 1.5763 -2.3875 29 1 0.7376 2.3911 -1.5553 30 1 2.3589 3.1254 -1.5553 31 1 4.0689 0.8301 -2.1297 32 1 6.4825 0.3503 -2.1360 33 1 7.7167 0.2073 -0.0112 34 1 7.6025 0.8200 2.4600 35 1 7.2453 0.7646 5.1099 36 1 7.7035 -0.8734 4.5850 37 1 4.9784 -2.2790 9.6168 38 1 4.1036 1.0101 2.1305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848201913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:54 Heat of formation + Delta-G solvation = 12.079995 kcal Electronic energy + Delta-G solvation = -22535.569442 eV Core-core repulsion = 19019.363610 eV Total energy + Delta-G solvation = -3516.205832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -40.58078 -38.55902 -36.28667 -34.86256 -34.10438 -32.45831 -31.60767 -30.95503 -29.53435 -28.40431 -25.79019 -25.52715 -23.62667 -23.10044 -20.61110 -19.05746 -17.92914 -17.53942 -16.77175 -16.53425 -16.02457 -15.81776 -15.75252 -15.28120 -14.83033 -14.62700 -14.27621 -13.92038 -13.59969 -13.52781 -13.42704 -13.32460 -13.06528 -12.95477 -12.65860 -12.41947 -12.24075 -12.15963 -11.58141 -11.10447 -11.08514 -11.05758 -10.79831 -10.59962 -9.86773 -9.73506 -9.52460 -9.21187 -9.10206 -8.68312 -8.43789 -8.29247 -6.55112 -6.24333 -3.96338 -0.35089 0.42983 0.97473 2.56918 2.74177 2.78614 3.20366 3.22977 3.26877 3.29767 3.51202 3.70133 3.94425 4.16197 4.44640 4.52202 4.62523 4.69671 4.72204 4.88223 5.09921 5.10991 5.12097 5.28454 5.39938 5.44424 5.55085 5.64316 5.73512 5.75305 5.84911 5.93675 5.95009 6.00163 6.11938 6.62660 6.67164 7.30425 7.56929 8.26052 8.32241 9.20795 10.83048 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.002794 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.581252 B =10019.667503 C =11167.239317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.113 6.113 3 S 2.362 3.638 4 C -0.679 4.679 5 O -0.948 6.948 6 C -0.529 4.529 7 C -0.062 4.062 8 C -0.112 4.112 9 C -0.095 4.095 10 C 0.149 3.851 11 N -0.681 5.681 12 C 0.529 3.471 13 O -0.488 6.488 14 C -0.153 4.153 15 S -0.054 6.054 16 C -0.537 4.537 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.865 5.865 20 Si 0.920 3.080 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.280 1.280 24 C -0.022 4.022 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.413 0.587 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.269 0.731 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 8.815 -25.447 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -1.019 6.019 3 S 2.546 3.454 4 C -0.830 4.830 5 O -0.933 6.933 6 C -0.627 4.627 7 C -0.083 4.083 8 C -0.132 4.132 9 C -0.116 4.116 10 C 0.052 3.948 11 N -0.329 5.329 12 C 0.316 3.684 13 O -0.359 6.359 14 C -0.304 4.304 15 S 0.172 5.828 16 C -0.685 4.685 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.500 5.500 20 Si 0.747 3.253 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.043 4.043 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.109 0.891 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.250 0.750 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.905 8.043 -24.595 25.892 hybrid contribution 2.622 0.948 0.410 2.818 sum 1.717 8.992 -24.184 25.859 Atomic orbital electron populations 1.21255 0.82698 1.03375 0.98487 1.75058 1.19153 1.31486 1.76185 1.12195 0.78160 0.74958 0.80074 1.30623 1.11340 1.15366 1.25621 1.93480 1.80619 1.77872 1.41330 1.27953 1.16835 1.18600 0.99268 1.20839 0.95356 0.96480 0.95609 1.20990 0.93852 1.00330 0.98024 1.21284 1.00909 0.98181 0.91223 1.17770 0.91891 0.99015 0.86124 1.43717 1.17471 1.63463 1.08218 1.20700 0.87961 0.75563 0.84146 1.90762 1.15739 1.46741 1.82698 1.23544 1.04274 1.05823 0.96734 1.85553 1.13963 1.80524 1.02733 1.22884 0.98392 1.49473 0.97793 0.90769 1.25008 0.95815 0.94540 0.98237 1.70027 1.15572 1.39290 1.25156 0.86094 0.80292 0.78004 0.80958 1.19624 1.20531 1.20534 1.21155 0.93785 0.91449 0.97960 0.94345 0.94769 0.89137 0.85739 0.85999 0.86751 0.84619 0.84328 0.84451 0.75011 0.88613 0.88610 0.92127 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 10.94 59.84 0.65 1.78 16 2 N -1.11 -16.02 10.90 -16.64 -0.18 -16.20 16 3 S 2.36 28.72 4.39 -107.50 -0.47 28.24 16 4 C -0.68 -4.54 9.96 101.05 1.01 -3.53 16 5 O -0.95 -16.33 17.43 -35.23 -0.61 -16.94 16 6 C -0.53 -6.31 5.95 -39.61 -0.24 -6.55 16 7 C -0.06 -0.51 9.45 -39.55 -0.37 -0.89 16 8 C -0.11 -0.83 10.04 -39.61 -0.40 -1.22 16 9 C -0.10 -0.84 9.97 -39.39 -0.39 -1.23 16 10 C 0.15 1.89 6.30 -83.69 -0.53 1.36 16 11 N -0.68 -8.75 5.34 -9.86 -0.05 -8.81 16 12 C 0.53 9.59 7.69 -10.98 -0.08 9.51 16 13 O -0.49 -11.00 13.30 5.55 0.07 -10.93 16 14 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 15 S -0.05 -1.46 20.57 -107.50 -2.21 -3.67 16 16 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 20 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.02 -0.33 8.21 -39.39 -0.32 -0.65 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.29 7.51 -51.93 -0.39 -0.10 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.12 0.54 7.34 -51.92 -0.38 0.16 16 29 H 0.12 0.74 7.73 -51.92 -0.40 0.34 16 30 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.14 0.58 6.90 -52.49 -0.36 0.22 16 32 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.41 3.58 8.82 -40.82 -0.36 3.22 16 35 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 36 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.16 3.00 5.92 -52.48 -0.31 2.69 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -40.21 352.84 -7.39 -47.61 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.71 Total: 1.46 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.25 Total: -16.97 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.50 Total: -50.38 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.54 Total: -27.87 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 27.26 SS G_CDS: -2.68 Total: 24.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -40.21 -7.39 -47.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848201913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.688 kcal (2) G-P(sol) polarization free energy of solvation -40.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds