Wall clock time and date at job start Tue Mar 31 2020 15:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 S 1.49357 * 120.00071 * 2 1 4 4 C 1.81394 * 108.33432 * 297.53476 * 3 2 1 5 5 O 1.42102 * 108.32827 * 62.46922 * 3 2 1 6 6 C 1.76198 * 108.73395 * 179.97438 * 3 2 1 7 7 C 1.38299 * 119.96413 * 87.55746 * 6 3 2 8 8 C 1.38265 * 120.14323 * 179.97438 * 7 6 3 9 9 C 1.38135 * 120.06892 * 359.76135 * 8 7 6 10 10 C 1.38852 * 119.92476 * 0.51358 * 9 8 7 11 11 N 1.39926 * 120.06714 * 179.74309 * 10 9 8 12 12 C 1.34776 * 120.00097 * 214.81171 * 11 10 9 13 13 O 1.21293 * 119.99757 * 355.36936 * 12 11 10 14 14 C 1.50705 * 120.00457 * 175.37689 * 12 11 10 15 15 S 1.80998 * 109.47100 * 179.97438 * 14 12 11 16 16 C 1.76209 * 99.99777 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99721 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31635 * 120.00097 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46920 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46750 * 120.00413 * 20 18 16 23 23 H 1.48497 * 109.47155 * 240.00120 * 20 18 16 24 24 C 1.38090 * 119.96672 * 267.53187 * 6 3 2 25 25 H 1.09002 * 109.47603 * 299.99615 * 1 2 3 26 26 H 1.09002 * 109.47604 * 59.99823 * 1 2 3 27 27 H 1.08999 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47013 * 301.10475 * 4 3 2 29 29 H 1.08998 * 109.47322 * 61.09996 * 4 3 2 30 30 H 1.08994 * 109.47617 * 181.10452 * 4 3 2 31 31 H 1.07998 * 119.93282 * 359.97438 * 7 6 3 32 32 H 1.07995 * 119.96632 * 180.02562 * 8 7 6 33 33 H 1.07994 * 120.03798 * 180.27130 * 9 8 7 34 34 H 0.96997 * 120.00517 * 34.80871 * 11 10 9 35 35 H 1.09000 * 109.47142 * 59.99391 * 14 12 11 36 36 H 1.09005 * 109.46453 * 299.99544 * 14 12 11 37 37 H 0.96998 * 119.99766 * 179.97438 * 19 18 16 38 38 H 1.08008 * 120.03402 * 0.02562 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2117 1.2935 0.0000 4 6 1.8076 2.1856 -1.5268 5 8 1.8951 1.9922 1.1962 6 6 3.9397 0.9492 0.0007 7 6 4.6076 0.7639 -1.1960 8 6 5.9637 0.4941 -1.1998 9 6 6.6567 0.4137 -0.0075 10 6 5.9878 0.5936 1.1959 11 7 6.6859 0.5074 2.4056 12 6 6.0846 -0.0099 3.4952 13 8 4.9136 -0.3231 3.4505 14 6 6.8670 -0.1992 4.7693 15 16 5.7894 -0.9070 6.0396 16 6 6.9283 -1.0186 7.3795 17 1 7.9495 -0.6922 7.2487 18 6 6.5130 -1.5259 8.6028 19 7 5.2685 -1.9241 8.7620 20 14 7.7206 -1.6449 10.0231 21 1 9.0467 -1.1364 9.5892 22 1 7.2269 -0.8300 11.1621 23 1 7.8480 -3.0623 10.4471 24 6 4.6258 0.8652 1.1962 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.0836 1.5763 -2.3875 29 1 0.7376 2.3911 -1.5553 30 1 2.3589 3.1254 -1.5553 31 1 4.0689 0.8301 -2.1297 32 1 6.4825 0.3503 -2.1360 33 1 7.7167 0.2073 -0.0112 34 1 7.6025 0.8200 2.4600 35 1 7.2453 0.7646 5.1099 36 1 7.7035 -0.8734 4.5850 37 1 4.9784 -2.2790 9.6168 38 1 4.1036 1.0101 2.1305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848201913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:53 Heat of formation + Delta-G solvation = -22.008067 kcal Electronic energy + Delta-G solvation = -22537.047611 eV Core-core repulsion = 19019.363610 eV Total energy + Delta-G solvation = -3517.684001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69480 -39.64439 -37.37707 -36.04444 -35.01023 -34.61143 -32.38932 -32.14360 -30.37565 -29.50149 -27.69536 -26.70515 -24.51706 -24.00213 -21.84734 -20.17696 -19.70483 -18.52059 -18.11142 -17.48232 -17.04698 -16.90917 -16.75699 -16.72245 -16.42647 -16.01093 -15.63232 -15.06795 -14.79109 -14.52780 -14.33882 -14.28219 -13.99324 -13.93747 -13.74039 -13.64413 -13.27850 -13.19663 -13.02713 -12.93366 -12.62324 -12.54873 -12.06578 -11.75310 -11.63518 -11.18351 -11.05839 -10.40638 -10.31243 -10.12127 -9.56510 -9.40529 -8.72214 -8.36991 -6.16862 -1.20950 -0.35935 0.12240 1.19041 1.38516 1.40917 1.42957 1.55488 1.82413 2.02781 2.23970 2.43294 2.82426 2.97539 3.12863 3.25806 3.69149 3.82551 3.95068 4.00040 4.10609 4.14414 4.21323 4.32870 4.35244 4.42542 4.47511 4.65961 4.67763 4.86914 4.94842 5.00492 5.08845 5.15505 5.30049 5.39681 5.77200 5.79471 6.17592 6.24612 6.99997 7.04021 8.72637 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.002794 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.581252 B =10019.667503 C =11167.239317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.180 6.180 3 S 2.355 3.645 4 C -0.637 4.637 5 O -1.025 7.025 6 C -0.541 4.541 7 C -0.047 4.047 8 C -0.100 4.100 9 C -0.077 4.077 10 C 0.117 3.883 11 N -0.655 5.655 12 C 0.528 3.472 13 O -0.544 6.544 14 C -0.125 4.125 15 S -0.159 6.159 16 C -0.543 4.543 17 H 0.088 0.912 18 C 0.010 3.990 19 N -0.913 5.913 20 Si 1.003 2.997 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.274 1.274 24 C -0.067 4.067 25 H 0.011 0.989 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.167 0.833 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.187 0.813 32 H 0.193 0.807 33 H 0.177 0.823 34 H 0.435 0.565 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.271 0.729 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 9.978 -30.128 32.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -1.086 6.086 3 S 2.549 3.451 4 C -0.795 4.795 5 O -1.011 7.011 6 C -0.639 4.639 7 C -0.067 4.067 8 C -0.119 4.119 9 C -0.097 4.097 10 C 0.021 3.979 11 N -0.304 5.304 12 C 0.316 3.684 13 O -0.420 6.420 14 C -0.276 4.276 15 S 0.068 5.932 16 C -0.690 4.690 17 H 0.106 0.894 18 C -0.195 4.195 19 N -0.550 5.550 20 Si 0.825 3.175 21 H -0.176 1.176 22 H -0.201 1.201 23 H -0.199 1.199 24 C -0.089 4.089 25 H 0.030 0.970 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.185 0.815 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.205 0.795 32 H 0.210 0.790 33 H 0.195 0.805 34 H 0.275 0.725 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.718 9.202 -29.264 30.797 hybrid contribution 1.566 0.728 1.492 2.282 sum 4.284 9.929 -27.772 29.803 Atomic orbital electron populations 1.21301 0.82498 1.03455 0.99065 1.74848 1.19782 1.34070 1.79908 1.11268 0.78314 0.74596 0.80912 1.30273 1.12858 1.15844 1.20514 1.93405 1.82154 1.79076 1.46432 1.27865 1.16165 1.20039 0.99873 1.21567 0.96256 0.93241 0.95622 1.21688 0.93384 0.97507 0.99344 1.21777 1.02682 0.95451 0.89763 1.18018 0.91333 1.01450 0.87069 1.43247 1.18075 1.61882 1.07224 1.20494 0.87111 0.75707 0.85107 1.90773 1.18020 1.49574 1.83660 1.23345 1.02853 1.06739 0.94697 1.85832 1.18651 1.82055 1.06682 1.23225 0.98630 1.49233 0.97939 0.89412 1.26207 0.97840 0.93852 1.01568 1.70212 1.18124 1.40596 1.26047 0.84845 0.78010 0.78163 0.76524 1.17647 1.20097 1.19943 1.20872 0.95405 0.95317 0.97296 0.96997 0.91045 0.89466 0.81494 0.84400 0.83814 0.79543 0.79021 0.80547 0.72462 0.86295 0.85949 0.92011 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.28 10.94 127.77 1.40 3.68 16 2 N -1.18 -36.13 10.90 -206.56 -2.25 -38.38 16 3 S 2.36 58.96 4.39 -56.49 -0.25 58.72 16 4 C -0.64 -5.56 9.96 113.37 1.13 -4.44 16 5 O -1.03 -39.71 17.43 -148.98 -2.60 -42.30 16 6 C -0.54 -12.74 5.95 22.25 0.13 -12.61 16 7 C -0.05 -0.55 9.45 22.29 0.21 -0.34 16 8 C -0.10 -0.86 10.04 22.25 0.22 -0.63 16 9 C -0.08 -1.02 9.97 22.39 0.22 -0.80 16 10 C 0.12 2.92 6.30 38.15 0.24 3.16 16 11 N -0.66 -16.74 5.34 -303.49 -1.62 -18.36 16 12 C 0.53 20.20 7.69 87.66 0.67 20.87 16 13 O -0.54 -27.13 13.30 -3.07 -0.04 -27.17 16 14 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 15 S -0.16 -9.08 20.57 -56.49 -1.16 -10.24 16 16 C -0.54 -31.19 9.50 67.95 0.65 -30.54 16 17 H 0.09 4.61 7.80 -2.91 -0.02 4.59 16 18 C 0.01 0.57 5.49 84.86 0.47 1.03 16 19 N -0.91 -57.49 13.22 21.65 0.29 -57.20 16 20 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 21 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 C -0.07 -2.15 8.21 22.39 0.18 -1.97 16 25 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.07 1.18 7.51 -2.39 -0.02 1.16 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.17 0.21 7.34 -2.39 -0.02 0.19 16 29 H 0.14 1.04 7.73 -2.39 -0.02 1.02 16 30 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.19 0.20 6.90 -2.91 -0.02 0.18 16 32 H 0.19 -0.22 8.06 -2.91 -0.02 -0.25 16 33 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.43 6.69 8.82 -92.71 -0.82 5.88 16 35 H 0.12 4.09 8.14 -2.40 -0.02 4.07 16 36 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 37 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.11 4.62 5.92 -2.91 -0.02 4.60 16 Total: -1.00 -103.55 352.84 0.63 -102.91 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.27 Total: 13.01 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 5.96 Total: -27.08 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.58 Total: -113.94 kcal Atomic # 8 Polarization: -66.84 SS G_CDS: -2.64 Total: -69.47 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 49.88 SS G_CDS: -1.41 Total: 48.47 kcal Total: -103.55 0.63 -102.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848201913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.904 kcal (2) G-P(sol) polarization free energy of solvation -103.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds