Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.49358 * 120.00308 * 2 1 4 4 C 1.81404 * 108.33056 * 62.46710 * 3 2 1 5 5 O 1.42100 * 108.32949 * 297.53522 * 3 2 1 6 6 C 1.76199 * 108.73254 * 179.97438 * 3 2 1 7 7 C 1.38307 * 119.96049 * 152.48849 * 6 3 2 8 8 C 1.38265 * 120.13718 * 179.97438 * 7 6 3 9 9 C 1.38137 * 120.07038 * 359.77132 * 8 7 6 10 10 C 1.38847 * 119.92651 * 0.50810 * 9 8 7 11 11 N 1.39929 * 120.06407 * 179.74554 * 10 9 8 12 12 C 1.34781 * 119.99529 * 214.80736 * 11 10 9 13 13 O 1.21285 * 120.00157 * 355.37805 * 12 11 10 14 14 C 1.50707 * 120.00000 * 175.37833 * 12 11 10 15 15 S 1.80994 * 109.47124 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99829 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00149 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99753 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99964 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99543 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47529 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46869 * 120.00467 * 20 18 16 23 23 H 1.48498 * 109.46743 * 239.99730 * 20 18 16 24 24 C 1.38085 * 119.96633 * 332.47115 * 6 3 2 25 25 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46678 * 299.99805 * 1 2 3 27 27 H 1.09001 * 109.46786 * 59.99771 * 1 2 3 28 28 H 1.08996 * 109.46767 * 178.89399 * 4 3 2 29 29 H 1.09002 * 109.46653 * 298.89559 * 4 3 2 30 30 H 1.09002 * 109.47060 * 58.89710 * 4 3 2 31 31 H 1.07991 * 119.93034 * 359.97438 * 7 6 3 32 32 H 1.08001 * 119.96090 * 180.02562 * 8 7 6 33 33 H 1.08002 * 120.03009 * 180.26882 * 9 8 7 34 34 H 0.96992 * 120.00678 * 34.81090 * 11 10 9 35 35 H 1.09000 * 109.46861 * 59.99892 * 14 12 11 36 36 H 1.09000 * 109.46753 * 299.99959 * 14 12 11 37 37 H 0.97009 * 120.00004 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.03821 * 0.03511 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2118 1.2934 0.0000 4 6 1.8078 2.1855 1.5270 5 8 1.8953 1.9923 -1.1961 6 6 3.9398 0.9491 0.0007 7 6 4.8252 1.8562 -0.5526 8 6 6.1819 1.5899 -0.5535 9 6 6.6578 0.4185 0.0028 10 6 5.7710 -0.4968 0.5539 11 7 6.2494 -1.6868 1.1135 12 6 5.5259 -2.8191 1.0089 13 8 4.4234 -2.7900 0.5043 14 6 6.0869 -4.1215 1.5191 15 16 4.8874 -5.4471 1.2363 16 6 5.7767 -6.8126 1.9068 17 1 6.7616 -6.6632 2.3237 18 6 5.2108 -8.0799 1.8999 19 7 4.0101 -8.2618 1.3922 20 14 6.1533 -9.5274 2.6113 21 1 7.4701 -9.0613 3.1151 22 1 5.3773 -10.1220 3.7292 23 1 6.3617 -10.5497 1.5547 24 6 4.4087 -0.2260 0.5541 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.3592 3.1253 1.5554 29 1 0.7377 2.3910 1.5553 30 1 2.0837 1.5762 2.3876 31 1 4.4559 2.7744 -0.9849 32 1 6.8707 2.3005 -0.9860 33 1 7.7181 0.2132 0.0057 34 1 7.1015 -1.6968 1.5766 35 1 6.2899 -4.0363 2.5867 36 1 7.0122 -4.3504 0.9904 37 1 3.6148 -9.1477 1.3871 38 1 3.7169 -0.9341 0.9858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848201914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = 12.230465 kcal Electronic energy + Delta-G solvation = -22607.259950 eV Core-core repulsion = 19091.060643 eV Total energy + Delta-G solvation = -3516.199307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.55868 -38.53195 -36.32637 -34.84675 -34.05828 -32.46927 -31.63775 -30.80862 -29.37855 -28.49151 -25.74320 -25.52821 -23.69690 -22.96846 -20.56088 -19.06959 -17.90509 -17.51462 -16.75549 -16.46720 -15.98704 -15.82911 -15.63637 -15.32250 -14.83964 -14.62723 -14.26275 -13.90262 -13.69048 -13.46299 -13.34435 -13.23004 -13.00642 -12.83387 -12.66529 -12.38808 -12.23661 -12.15358 -11.67275 -11.10259 -11.08090 -11.06426 -10.80676 -10.57599 -9.87265 -9.71236 -9.48094 -9.13660 -9.11164 -8.61868 -8.41200 -8.29639 -6.55641 -6.25395 -3.97132 -0.33067 0.47065 0.99832 2.58426 2.74830 2.78671 3.19387 3.22677 3.28474 3.31253 3.48000 3.58763 4.13122 4.15482 4.46329 4.66052 4.68981 4.74108 4.77815 4.88946 5.09937 5.12184 5.13757 5.38199 5.42059 5.53442 5.56169 5.69292 5.73458 5.77438 5.88710 5.97586 6.00212 6.04813 6.14036 6.68201 6.73568 7.31788 7.56004 8.28026 8.31255 9.19908 10.81906 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.002888 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.452640 B = 9693.229788 C =10914.232319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.106 6.106 3 S 2.364 3.636 4 C -0.677 4.677 5 O -0.957 6.957 6 C -0.536 4.536 7 C -0.058 4.058 8 C -0.113 4.113 9 C -0.095 4.095 10 C 0.144 3.856 11 N -0.682 5.682 12 C 0.526 3.474 13 O -0.482 6.482 14 C -0.154 4.154 15 S -0.052 6.052 16 C -0.538 4.538 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.865 5.865 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.280 1.280 24 C -0.021 4.021 25 H 0.094 0.906 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.413 0.587 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.269 0.731 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 23.569 1.679 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -1.013 6.013 3 S 2.548 3.452 4 C -0.828 4.828 5 O -0.942 6.942 6 C -0.634 4.634 7 C -0.079 4.079 8 C -0.133 4.133 9 C -0.116 4.116 10 C 0.047 3.953 11 N -0.330 5.330 12 C 0.314 3.686 13 O -0.352 6.352 14 C -0.304 4.304 15 S 0.174 5.826 16 C -0.686 4.686 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.500 5.500 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.043 4.043 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.249 0.751 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.955 23.240 0.117 23.322 hybrid contribution 2.405 -0.396 1.751 3.001 sum 4.360 22.844 1.868 23.331 Atomic orbital electron populations 1.21248 0.82455 1.03678 0.98206 1.74982 1.19351 1.30765 1.76204 1.12156 0.78240 0.74598 0.80168 1.30621 1.11035 1.15233 1.25903 1.93440 1.80841 1.78293 1.41664 1.28021 1.16542 1.03937 1.14917 1.20811 0.93422 0.97906 0.95761 1.20980 0.95000 0.97303 1.00007 1.21298 1.00031 0.94339 0.95958 1.17835 0.92896 0.87315 0.97225 1.43724 1.25103 1.06754 1.57378 1.20694 0.85345 0.84415 0.78195 1.90793 1.18647 1.85280 1.40527 1.23545 1.06233 0.96534 1.04102 1.85541 1.20334 0.96674 1.80052 1.22893 1.05380 0.94166 1.46198 0.90802 1.24996 0.95115 0.98386 0.95039 1.70022 1.14351 1.23336 1.42324 0.86109 0.79495 0.81117 0.78719 1.19626 1.20530 1.20547 1.21308 0.95779 0.93471 0.93695 0.88784 0.94695 0.94680 0.87081 0.86149 0.85528 0.84439 0.84329 0.84527 0.75128 0.88715 0.88737 0.92134 0.81216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 10.94 59.85 0.65 1.89 16 2 N -1.11 -16.90 10.34 -16.63 -0.17 -17.07 16 3 S 2.36 28.53 4.34 -107.50 -0.47 28.06 16 4 C -0.68 -5.29 10.58 101.05 1.07 -4.22 16 5 O -0.96 -14.74 17.73 -35.23 -0.62 -15.37 16 6 C -0.54 -6.37 5.89 -39.61 -0.23 -6.60 16 7 C -0.06 -0.56 9.58 -39.55 -0.38 -0.94 16 8 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 9 C -0.10 -0.85 9.97 -39.39 -0.39 -1.24 16 10 C 0.14 1.75 6.30 -83.69 -0.53 1.22 16 11 N -0.68 -8.31 5.34 -9.86 -0.05 -8.36 16 12 C 0.53 9.12 7.69 -10.98 -0.08 9.04 16 13 O -0.48 -10.36 13.30 5.55 0.07 -10.29 16 14 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 15 S -0.05 -1.38 20.57 -107.50 -2.21 -3.59 16 16 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 20 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.02 -0.29 8.20 -39.40 -0.32 -0.62 16 25 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.34 7.51 -51.93 -0.39 -0.05 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.12 0.84 7.73 -51.92 -0.40 0.44 16 30 H 0.13 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.14 1.01 7.99 -52.49 -0.42 0.59 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.41 3.38 8.82 -40.82 -0.36 3.02 16 35 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.17 2.73 5.92 -52.49 -0.31 2.42 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -38.90 355.08 -7.39 -46.29 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.81 Total: 2.08 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -0.19 Total: -18.07 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.51 Total: -50.45 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.55 Total: -25.66 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 27.15 SS G_CDS: -2.68 Total: 24.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.90 -7.39 -46.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848201914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.522 kcal (2) G-P(sol) polarization free energy of solvation -38.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds