Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.49358 * 120.00308 * 2 1 4 4 C 1.81404 * 108.33056 * 62.46710 * 3 2 1 5 5 O 1.42100 * 108.32949 * 297.53522 * 3 2 1 6 6 C 1.76199 * 108.73254 * 179.97438 * 3 2 1 7 7 C 1.38307 * 119.96049 * 152.48849 * 6 3 2 8 8 C 1.38265 * 120.13718 * 179.97438 * 7 6 3 9 9 C 1.38137 * 120.07038 * 359.77132 * 8 7 6 10 10 C 1.38847 * 119.92651 * 0.50810 * 9 8 7 11 11 N 1.39929 * 120.06407 * 179.74554 * 10 9 8 12 12 C 1.34781 * 119.99529 * 214.80736 * 11 10 9 13 13 O 1.21285 * 120.00157 * 355.37805 * 12 11 10 14 14 C 1.50707 * 120.00000 * 175.37833 * 12 11 10 15 15 S 1.80994 * 109.47124 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99829 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00149 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99753 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99964 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99543 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47529 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46869 * 120.00467 * 20 18 16 23 23 H 1.48498 * 109.46743 * 239.99730 * 20 18 16 24 24 C 1.38085 * 119.96633 * 332.47115 * 6 3 2 25 25 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46678 * 299.99805 * 1 2 3 27 27 H 1.09001 * 109.46786 * 59.99771 * 1 2 3 28 28 H 1.08996 * 109.46767 * 178.89399 * 4 3 2 29 29 H 1.09002 * 109.46653 * 298.89559 * 4 3 2 30 30 H 1.09002 * 109.47060 * 58.89710 * 4 3 2 31 31 H 1.07991 * 119.93034 * 359.97438 * 7 6 3 32 32 H 1.08001 * 119.96090 * 180.02562 * 8 7 6 33 33 H 1.08002 * 120.03009 * 180.26882 * 9 8 7 34 34 H 0.96992 * 120.00678 * 34.81090 * 11 10 9 35 35 H 1.09000 * 109.46861 * 59.99892 * 14 12 11 36 36 H 1.09000 * 109.46753 * 299.99959 * 14 12 11 37 37 H 0.97009 * 120.00004 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.03821 * 0.03511 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2118 1.2934 0.0000 4 6 1.8078 2.1855 1.5270 5 8 1.8953 1.9923 -1.1961 6 6 3.9398 0.9491 0.0007 7 6 4.8252 1.8562 -0.5526 8 6 6.1819 1.5899 -0.5535 9 6 6.6578 0.4185 0.0028 10 6 5.7710 -0.4968 0.5539 11 7 6.2494 -1.6868 1.1135 12 6 5.5259 -2.8191 1.0089 13 8 4.4234 -2.7900 0.5043 14 6 6.0869 -4.1215 1.5191 15 16 4.8874 -5.4471 1.2363 16 6 5.7767 -6.8126 1.9068 17 1 6.7616 -6.6632 2.3237 18 6 5.2108 -8.0799 1.8999 19 7 4.0101 -8.2618 1.3922 20 14 6.1533 -9.5274 2.6113 21 1 7.4701 -9.0613 3.1151 22 1 5.3773 -10.1220 3.7292 23 1 6.3617 -10.5497 1.5547 24 6 4.4087 -0.2260 0.5541 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.3592 3.1253 1.5554 29 1 0.7377 2.3910 1.5553 30 1 2.0837 1.5762 2.3876 31 1 4.4559 2.7744 -0.9849 32 1 6.8707 2.3005 -0.9860 33 1 7.7181 0.2132 0.0057 34 1 7.1015 -1.6968 1.5766 35 1 6.2899 -4.0363 2.5867 36 1 7.0122 -4.3504 0.9904 37 1 3.6148 -9.1477 1.3871 38 1 3.7169 -0.9341 0.9858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848201914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = -19.124085 kcal Electronic energy + Delta-G solvation = -22608.619585 eV Core-core repulsion = 19091.060643 eV Total energy + Delta-G solvation = -3517.558942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63374 -39.60135 -37.36901 -35.98225 -35.04523 -34.57919 -32.42970 -32.01030 -30.13328 -29.68120 -27.65824 -26.71965 -24.57248 -23.89550 -21.75203 -20.15626 -19.66477 -18.50775 -18.03629 -17.42690 -16.98289 -16.87676 -16.77445 -16.65481 -16.41353 -15.96353 -15.64454 -14.98966 -14.75230 -14.54621 -14.45716 -14.13774 -14.02608 -13.89994 -13.73136 -13.59782 -13.26706 -13.16167 -13.02378 -12.91449 -12.63934 -12.59105 -12.04186 -11.72051 -11.59202 -11.15436 -10.97200 -10.36602 -10.25684 -10.08471 -9.58335 -9.36640 -8.66515 -8.34000 -6.12413 -1.21013 -0.34329 0.14663 1.23685 1.42286 1.44596 1.47496 1.57420 1.78486 2.07177 2.27095 2.47649 2.62235 3.00641 3.27413 3.30277 3.71021 3.87258 3.98975 4.02431 4.07659 4.10196 4.26886 4.30721 4.36273 4.46126 4.48927 4.67548 4.71353 4.88973 4.91171 5.01529 5.12799 5.16253 5.30312 5.43094 5.78832 5.82388 6.20633 6.31498 7.07108 7.07945 8.75299 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.002888 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.452640 B = 9693.229788 C =10914.232319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.184 6.184 3 S 2.375 3.625 4 C -0.647 4.647 5 O -1.002 7.002 6 C -0.548 4.548 7 C -0.058 4.058 8 C -0.103 4.103 9 C -0.077 4.077 10 C 0.117 3.883 11 N -0.656 5.656 12 C 0.529 3.471 13 O -0.534 6.534 14 C -0.127 4.127 15 S -0.152 6.152 16 C -0.544 4.544 17 H 0.086 0.914 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.276 1.276 24 C -0.050 4.050 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.176 0.824 34 H 0.434 0.566 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 26.223 2.989 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -1.091 6.091 3 S 2.567 3.433 4 C -0.803 4.803 5 O -0.987 6.987 6 C -0.647 4.647 7 C -0.078 4.078 8 C -0.122 4.122 9 C -0.097 4.097 10 C 0.021 3.979 11 N -0.304 5.304 12 C 0.316 3.684 13 O -0.408 6.408 14 C -0.278 4.278 15 S 0.075 5.925 16 C -0.692 4.692 17 H 0.104 0.896 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.177 1.177 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.071 4.071 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.164 0.836 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.201 0.799 33 H 0.194 0.806 34 H 0.274 0.726 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.693 25.915 1.398 26.570 hybrid contribution 1.359 -0.927 1.400 2.160 sum 7.053 24.988 2.798 26.115 Atomic orbital electron populations 1.21246 0.82283 1.03125 0.99294 1.74708 1.20091 1.34786 1.79542 1.10710 0.78172 0.73816 0.80587 1.30326 1.12659 1.15886 1.21477 1.93392 1.81886 1.78792 1.44633 1.27967 1.16385 1.04248 1.16064 1.21293 0.94096 0.98059 0.94366 1.21544 0.94832 0.97447 0.98379 1.21732 1.01328 0.93111 0.93500 1.18048 0.92909 0.87812 0.99113 1.43249 1.25087 1.05446 1.56660 1.20422 0.84914 0.85306 0.77781 1.90806 1.20899 1.86053 1.43092 1.23349 1.04158 0.94258 1.06041 1.85782 1.25220 1.00681 1.80815 1.23241 1.05663 0.94475 1.45808 0.89554 1.26142 0.96034 1.01794 0.95289 1.70200 1.16474 1.24117 1.44077 0.84895 0.78471 0.76712 0.77792 1.17742 1.20063 1.20164 1.21094 0.96452 0.93977 0.95612 0.90466 0.91884 0.95325 0.83616 0.84498 0.84075 0.82110 0.79854 0.80644 0.72587 0.86262 0.86431 0.92056 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.59 10.94 127.77 1.40 3.99 16 2 N -1.18 -39.29 10.34 -206.54 -2.14 -41.43 16 3 S 2.38 58.20 4.34 -56.49 -0.25 57.96 16 4 C -0.65 -8.45 10.58 113.37 1.20 -7.25 16 5 O -1.00 -31.53 17.73 -148.98 -2.64 -34.17 16 6 C -0.55 -12.77 5.89 22.25 0.13 -12.64 16 7 C -0.06 -0.94 9.58 22.29 0.21 -0.72 16 8 C -0.10 -1.16 10.04 22.25 0.22 -0.94 16 9 C -0.08 -1.04 9.97 22.39 0.22 -0.81 16 10 C 0.12 2.65 6.30 38.15 0.24 2.89 16 11 N -0.66 -14.95 5.34 -303.49 -1.62 -16.57 16 12 C 0.53 18.51 7.69 87.66 0.67 19.18 16 13 O -0.53 -24.42 13.30 -3.04 -0.04 -24.46 16 14 C -0.13 -4.69 6.16 71.24 0.44 -4.25 16 15 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 16 C -0.54 -30.45 9.50 67.95 0.65 -29.81 16 17 H 0.09 4.43 7.80 -2.91 -0.02 4.40 16 18 C 0.01 0.68 5.49 84.86 0.47 1.15 16 19 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 20 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 21 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 24 C -0.05 -1.40 8.20 22.39 0.18 -1.22 16 25 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 1.29 7.51 -2.39 -0.02 1.27 16 27 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.14 1.51 7.73 -2.39 -0.02 1.49 16 30 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.16 1.82 7.99 -2.91 -0.02 1.79 16 32 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.43 5.75 8.82 -92.71 -0.82 4.93 16 35 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 36 H 0.12 3.80 8.14 -2.40 -0.02 3.78 16 37 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 38 H 0.14 4.77 5.92 -2.91 -0.02 4.76 16 Total: -1.00 -93.23 355.08 0.77 -92.46 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.27 Total: 16.81 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 6.04 Total: -30.44 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -3.47 Total: -113.85 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -2.68 Total: -58.63 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 49.89 SS G_CDS: -1.41 Total: 48.48 kcal Total: -93.23 0.77 -92.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848201914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.332 kcal (2) G-P(sol) polarization free energy of solvation -93.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds