Wall clock time and date at job start Tue Mar 31 2020 15:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81394 * 107.16798 * 2 1 4 4 O 1.42101 * 113.53983 * 233.80117 * 2 1 3 5 5 N 1.49347 * 107.52060 * 115.34456 * 2 1 3 6 6 C 1.32526 * 120.00161 * 180.02562 * 5 2 1 7 7 C 1.41904 * 120.29549 * 359.71966 * 6 5 2 8 8 C 1.36351 * 119.89338 * 179.69368 * 7 6 5 9 9 C 1.38796 * 120.53859 * 0.60955 * 8 7 6 10 10 C 1.39605 * 120.61810 * 359.66610 * 9 8 7 11 11 N 1.39899 * 119.95809 * 180.02562 * 10 9 8 12 12 C 1.34789 * 119.99666 * 213.41395 * 11 10 9 13 13 O 1.21282 * 119.99723 * 5.27633 * 12 11 10 14 14 C 1.50696 * 119.99698 * 185.27483 * 12 11 10 15 15 S 1.81002 * 109.47052 * 179.97438 * 14 12 11 16 16 C 1.76204 * 99.99992 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99670 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99453 * 180.02562 * 16 15 14 19 19 N 1.31633 * 119.99241 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00647 * 359.97438 * 18 16 15 21 21 H 1.48492 * 109.47085 * 90.00083 * 20 18 16 22 22 H 1.48490 * 109.47015 * 210.00451 * 20 18 16 23 23 H 1.48503 * 109.46487 * 330.00330 * 20 18 16 24 24 C 1.37962 * 120.08079 * 0.02562 * 10 9 8 25 25 H 1.09003 * 109.46621 * 304.65748 * 1 2 3 26 26 H 1.08998 * 109.47000 * 64.65902 * 1 2 3 27 27 H 1.09001 * 109.47084 * 184.65817 * 1 2 3 28 28 H 1.09002 * 109.46933 * 173.79836 * 3 2 1 29 29 H 1.09001 * 109.47522 * 293.80130 * 3 2 1 30 30 H 1.09005 * 109.47083 * 53.80602 * 3 2 1 31 31 H 1.08003 * 120.05190 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.73181 * 180.30334 * 8 7 6 33 33 H 1.08000 * 119.68627 * 179.68891 * 9 8 7 34 34 H 0.96990 * 120.00600 * 33.41479 * 11 10 9 35 35 H 1.09001 * 109.47693 * 300.00266 * 14 12 11 36 36 H 1.09005 * 109.47013 * 60.00020 * 14 12 11 37 37 H 0.97001 * 119.99422 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.26803 * 180.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.3495 1.7331 0.0000 4 8 2.3816 -0.7694 -1.0513 5 7 2.2637 -0.6096 1.2871 6 6 3.5576 -0.7318 1.5462 7 6 4.5213 -0.2908 0.6025 8 6 5.8505 -0.4147 0.8802 9 6 6.2715 -0.9812 2.0753 10 6 5.3424 -1.4276 3.0168 11 7 5.7821 -1.9960 4.2171 12 6 5.0691 -2.9822 4.7967 13 8 4.1000 -3.4427 4.2312 14 6 5.4763 -3.5126 6.1472 15 16 4.3304 -4.8194 6.6526 16 6 5.0219 -5.2446 8.2165 17 1 5.8995 -4.7288 8.5771 18 6 4.4386 -6.2426 8.9849 19 7 4.9555 -6.5606 10.1529 20 14 2.9202 -7.1344 8.3615 21 1 3.3330 -8.3249 7.5758 22 1 2.0910 -7.5658 9.5152 23 1 2.1296 -6.2210 7.4977 24 6 3.9911 -1.3090 2.7649 25 1 -0.3633 0.5844 0.8454 26 1 -0.3633 0.4398 -0.9288 27 1 -0.3633 -1.0243 0.0835 28 1 3.4329 1.7787 0.1110 29 1 2.0605 2.2028 -0.9402 30 1 1.8769 2.2594 0.8294 31 1 4.2025 0.1471 -0.3318 32 1 6.5817 -0.0738 0.1622 33 1 7.3278 -1.0772 2.2789 34 1 6.5998 -1.6805 4.6323 35 1 6.4867 -3.9173 6.0892 36 1 5.4501 -2.7042 6.8780 37 1 4.5477 -7.2578 10.6901 38 1 3.2697 -1.6530 3.4913 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848217623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:16 Heat of formation + Delta-G solvation = -16.147557 kcal Electronic energy + Delta-G solvation = -22468.672440 eV Core-core repulsion = 18951.242570 eV Total energy + Delta-G solvation = -3517.429870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46001 -39.75557 -37.56526 -36.68862 -34.85671 -34.67053 -32.00195 -30.89907 -30.27757 -30.02158 -28.78385 -27.84438 -23.91746 -23.44990 -21.66441 -20.08244 -19.75009 -18.55982 -18.08008 -17.64611 -17.12296 -16.92661 -16.81711 -16.60688 -16.44072 -15.80257 -15.28707 -14.95376 -14.80957 -14.57356 -14.44708 -14.18688 -14.06090 -13.93547 -13.85808 -13.59145 -13.36059 -13.14027 -13.02806 -12.97904 -12.68710 -12.38818 -12.16598 -11.87148 -11.80985 -11.17687 -11.13014 -10.96405 -10.54927 -10.44673 -9.25309 -9.00357 -8.51916 -8.33463 -6.22912 -1.46430 0.36241 0.65445 0.95209 1.30960 1.45283 1.50755 1.53164 1.65047 2.06641 2.17628 2.25344 2.69814 2.81174 2.86279 3.17703 3.74068 3.96693 3.98340 4.01025 4.03358 4.10834 4.17217 4.20146 4.42058 4.43243 4.51099 4.76217 4.80104 4.86902 4.94096 5.36705 5.40891 5.52076 5.62890 5.71010 5.96319 6.11632 6.40397 6.49740 6.93327 7.10368 8.60485 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020196 B = 0.002664 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.090262 B =10509.701813 C =11569.894031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 2.251 3.749 3 C -0.624 4.624 4 O -0.994 6.994 5 N -1.122 6.122 6 C 0.253 3.747 7 C -0.297 4.297 8 C -0.043 4.043 9 C -0.216 4.216 10 C 0.178 3.822 11 N -0.657 5.657 12 C 0.531 3.469 13 O -0.538 6.538 14 C -0.107 4.107 15 S -0.176 6.176 16 C -0.527 4.527 17 H 0.065 0.935 18 C 0.047 3.953 19 N -0.916 5.916 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.257 1.257 23 H -0.239 1.239 24 C -0.196 4.196 25 H 0.176 0.824 26 H 0.184 0.816 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.429 0.571 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.277 0.723 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 24.627 -25.229 35.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.454 3.546 3 C -0.781 4.781 4 O -0.980 6.980 5 N -1.001 6.001 6 C 0.140 3.860 7 C -0.322 4.322 8 C -0.062 4.062 9 C -0.238 4.238 10 C 0.083 3.917 11 N -0.304 5.304 12 C 0.318 3.682 13 O -0.414 6.414 14 C -0.258 4.258 15 S 0.051 5.949 16 C -0.675 4.675 17 H 0.083 0.917 18 C -0.159 4.159 19 N -0.554 5.554 20 Si 0.735 3.265 21 H -0.188 1.188 22 H -0.181 1.181 23 H -0.163 1.163 24 C -0.223 4.223 25 H 0.194 0.806 26 H 0.201 0.799 27 H 0.162 0.838 28 H 0.144 0.856 29 H 0.180 0.820 30 H 0.177 0.823 31 H 0.150 0.850 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.268 0.732 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.831 23.032 -26.200 35.985 hybrid contribution 1.459 0.239 1.210 1.910 sum -7.372 23.271 -24.990 34.934 Atomic orbital electron populations 1.28850 1.06261 1.14894 1.16024 1.14145 0.85249 0.81483 0.73715 1.30121 1.13640 1.20059 1.14267 1.93546 1.76410 1.65985 1.62087 1.69443 1.25380 1.58687 1.46590 1.17387 0.85726 0.90710 0.92170 1.22071 0.95717 1.14102 1.00308 1.20601 0.95191 0.94809 0.95615 1.21095 0.99168 1.09040 0.94543 1.17775 0.92855 0.94521 0.86574 1.43303 1.28220 1.36046 1.22826 1.20273 0.82575 0.78854 0.86461 1.90738 1.28151 1.58220 1.64297 1.23241 1.04271 1.02095 0.96169 1.84806 1.40979 1.46412 1.22740 1.22441 1.16781 1.24774 1.03467 0.91651 1.25533 0.99845 0.96343 0.94177 1.70013 1.41857 1.31454 1.12047 0.85887 0.80437 0.80564 0.79611 1.18806 1.18076 1.16289 1.20935 0.94389 1.08418 0.98577 0.80610 0.79862 0.83813 0.85612 0.82032 0.82264 0.84953 0.82834 0.83559 0.73183 0.86129 0.86116 0.91325 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 0.41 10.89 113.37 1.24 1.64 16 2 S 2.25 27.23 4.30 -56.49 -0.24 26.99 16 3 C -0.62 -1.86 10.23 113.37 1.16 -0.70 16 4 O -0.99 -23.49 16.15 -148.98 -2.41 -25.90 16 5 N -1.12 -28.62 10.16 -52.74 -0.54 -29.15 16 6 C 0.25 7.99 6.36 40.79 0.26 8.25 16 7 C -0.30 -7.75 7.48 22.74 0.17 -7.58 16 8 C -0.04 -1.01 9.96 21.96 0.22 -0.79 16 9 C -0.22 -5.51 9.98 22.73 0.23 -5.28 16 10 C 0.18 5.75 6.27 38.12 0.24 5.99 16 11 N -0.66 -19.83 5.34 -303.64 -1.62 -21.45 16 12 C 0.53 20.78 7.58 87.65 0.66 21.44 16 13 O -0.54 -26.04 13.55 -3.04 -0.04 -26.08 16 14 C -0.11 -4.25 6.16 71.23 0.44 -3.81 16 15 S -0.18 -9.24 18.55 -56.49 -1.05 -10.29 16 16 C -0.53 -31.28 10.04 67.95 0.68 -30.60 16 17 H 0.07 4.06 8.03 -2.91 -0.02 4.03 16 18 C 0.05 2.78 5.50 84.86 0.47 3.25 16 19 N -0.92 -56.50 13.97 21.65 0.30 -56.20 16 20 Si 0.91 46.13 27.74 68.60 1.90 48.04 16 21 H -0.26 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.24 -12.15 6.74 99.48 0.67 -11.48 16 24 C -0.20 -7.30 8.67 23.05 0.20 -7.10 16 25 H 0.18 -1.06 8.14 -2.39 -0.02 -1.08 16 26 H 0.18 -1.73 8.14 -2.39 -0.02 -1.75 16 27 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.13 0.92 5.93 -2.39 -0.01 0.91 16 29 H 0.16 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.13 2.79 4.62 -2.91 -0.01 2.78 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 33 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.43 9.12 8.82 -92.72 -0.82 8.30 16 35 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 36 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 37 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.10 4.55 6.41 -2.91 -0.02 4.53 16 Total: -1.00 -101.28 345.07 2.51 -98.76 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.24 Total: 10.58 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 5.96 Total: -15.30 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -1.86 Total: -106.80 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -2.45 Total: -51.98 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.04 kcal Atomic # 16 Polarization: 17.98 SS G_CDS: -1.29 Total: 16.69 kcal Total: -101.28 2.51 -98.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848217623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.616 kcal (2) G-P(sol) polarization free energy of solvation -101.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds