Wall clock time and date at job start Tue Mar 31 2020 15:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99647 * 2 1 4 4 H 1.48500 * 109.46832 * 269.99558 * 3 2 1 5 5 H 1.48495 * 109.47341 * 29.99621 * 3 2 1 6 6 H 1.48502 * 109.46915 * 150.00027 * 3 2 1 7 7 C 1.37875 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47188 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47474 * 179.97438 * 10 9 7 12 12 O 1.42091 * 110.54066 * 68.37233 * 11 10 9 13 13 O 1.42103 * 110.53972 * 291.62768 * 11 10 9 14 14 O 1.52190 * 104.45176 * 180.02562 * 11 10 9 15 15 C 1.35999 * 114.00360 * 74.99780 * 14 11 10 16 16 C 1.38793 * 120.18536 * 89.99922 * 15 14 11 17 17 C 1.38212 * 120.15255 * 180.02562 * 16 15 14 18 18 C 1.38341 * 120.25534 * 359.96494 * 17 16 15 19 19 C 1.38554 * 119.80673 * 359.97438 * 18 17 16 20 20 C 1.38596 * 120.11467 * 0.05217 * 19 18 17 21 21 O 1.36554 * 119.64140 * 179.88737 * 20 19 18 22 22 C 1.42915 * 115.92271 * 68.36607 * 21 20 19 23 23 C 1.52082 * 110.71999 * 275.61621 * 22 21 20 24 24 C 1.52059 * 112.36189 * 64.82209 * 23 22 21 25 25 O 1.36482 * 120.29786 * 180.02562 * 19 18 17 26 26 H 0.97002 * 120.00454 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47166 * 59.99515 * 9 7 2 28 28 H 1.08996 * 109.46751 * 299.99667 * 9 7 2 29 29 H 1.09002 * 109.47013 * 59.99973 * 10 9 7 30 30 H 1.09007 * 109.47534 * 300.00312 * 10 9 7 31 31 H 1.07997 * 119.92134 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.87055 * 179.97438 * 17 16 15 33 33 H 1.08004 * 120.09888 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.22388 * 35.96377 * 22 21 20 35 35 H 1.09002 * 109.22048 * 155.34983 * 22 21 20 36 36 H 1.09003 * 108.93834 * 304.05579 * 23 22 21 37 37 H 1.08996 * 108.86735 * 185.54395 * 23 22 21 38 38 H 1.09002 * 109.21622 * 174.79819 * 24 23 22 39 39 H 1.09003 * 109.21481 * 55.42204 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 0.0013 12 8 0.6640 -5.4200 -1.2353 13 8 0.6648 -5.4193 1.2386 14 8 2.4249 -6.2988 0.0019 15 6 3.0450 -6.4560 1.2020 16 6 2.5517 -7.3638 2.1288 17 6 3.1821 -7.5226 3.3485 18 6 4.3083 -6.7791 3.6531 19 6 4.8053 -5.8725 2.7307 20 6 4.1757 -5.7099 1.5068 21 8 4.6724 -4.8120 0.6058 22 6 5.9373 -5.1415 0.0279 23 6 7.0751 -4.6953 0.9330 24 6 7.0858 -5.4401 2.2587 25 8 5.9160 -5.1342 3.0206 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8895 31 1 1.6727 -7.9467 1.8967 32 1 2.7941 -8.2300 4.0664 33 1 4.7987 -6.9049 4.6071 34 1 5.9955 -6.2202 -0.1174 35 1 6.0313 -4.6440 -0.9374 36 1 6.9737 -3.6278 1.1286 37 1 8.0216 -4.8706 0.4218 38 1 7.9698 -5.1495 2.8263 39 1 7.1190 -6.5127 2.0673 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849403042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:24 Heat of formation + Delta-G solvation = -151.024572 kcal Electronic energy + Delta-G solvation = -27258.117463 eV Core-core repulsion = 23259.793265 eV Total energy + Delta-G solvation = -3998.324199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59451 -39.87587 -37.77428 -37.17005 -36.65531 -35.58004 -33.83149 -33.17835 -31.10563 -30.27275 -29.45914 -26.84080 -25.56582 -23.82087 -22.57015 -22.07790 -21.71528 -20.25052 -18.67562 -18.09312 -17.69129 -17.40632 -16.62192 -16.43613 -16.10552 -15.62173 -15.40676 -15.23972 -14.67982 -14.51126 -14.41751 -14.29044 -13.52438 -13.31686 -13.27742 -12.66569 -12.48111 -12.39264 -12.32233 -11.92192 -11.68463 -11.67260 -11.56106 -11.36766 -11.15856 -11.01918 -10.86894 -10.65643 -10.35434 -10.29259 -10.24054 -9.63607 -9.17013 -8.92988 -8.81933 -8.43307 -6.05445 -4.09650 0.31744 0.76159 1.10086 2.46964 2.95268 3.17821 3.30601 3.36382 3.40074 3.51636 4.13145 4.33770 4.38194 4.43118 4.46183 4.62645 4.72507 4.79989 4.85391 4.94655 5.01512 5.02359 5.09724 5.29845 5.36285 5.49757 5.59699 5.77561 5.79641 5.83587 5.87621 5.98065 6.01516 6.32912 6.64728 6.83565 7.24385 7.38295 7.43589 7.88992 8.26267 8.93721 9.54176 11.05870 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.005198 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.298157 B = 5385.834065 C = 6770.060913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.592 4.592 11 S 2.567 3.433 12 O -0.939 6.939 13 O -0.962 6.962 14 O -0.668 6.668 15 C 0.083 3.917 16 C -0.088 4.088 17 C -0.095 4.095 18 C -0.105 4.105 19 C 0.082 3.918 20 C 0.058 3.942 21 O -0.305 6.305 22 C 0.057 3.943 23 C -0.190 4.190 24 C 0.060 3.940 25 O -0.311 6.311 26 H 0.264 0.736 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.282 -16.783 5.780 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.724 4.724 11 S 2.668 3.332 12 O -0.937 6.937 13 O -0.961 6.961 14 O -0.626 6.626 15 C 0.040 3.960 16 C -0.108 4.108 17 C -0.113 4.113 18 C -0.124 4.124 19 C 0.038 3.962 20 C 0.011 3.989 21 O -0.221 6.221 22 C -0.018 4.018 23 C -0.228 4.228 24 C -0.015 4.015 25 O -0.227 6.227 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.564 -16.982 5.630 23.069 hybrid contribution 0.920 1.348 -0.382 1.676 sum 15.484 -15.634 5.248 22.621 Atomic orbital electron populations 1.69958 1.06082 1.27061 1.49995 1.25059 0.94954 0.99443 0.95071 0.86478 0.79762 0.82948 0.78148 1.20535 1.21063 1.19771 1.21002 0.93145 0.89581 1.51531 0.91930 1.18964 0.92527 0.90555 0.98764 1.30551 1.13310 1.17245 1.11286 1.06315 0.75079 0.77264 0.74514 1.93574 1.70378 1.84651 1.45077 1.93577 1.72785 1.84009 1.45700 1.85739 1.64853 1.72126 1.39910 1.17953 0.95827 0.99473 0.82722 1.21340 1.00054 0.96760 0.92661 1.20985 0.94680 0.99724 0.95954 1.21294 0.97503 0.93511 1.00140 1.18836 0.90629 0.94235 0.92503 1.19292 0.95382 0.93340 0.90883 1.86599 1.36677 1.42467 1.56371 1.22745 0.81577 1.00743 0.96710 1.22496 0.99818 1.03832 0.96609 1.22689 0.87008 0.99136 0.92670 1.86436 1.17382 1.58264 1.60638 0.92629 0.94895 0.94848 0.85316 0.85590 0.83397 0.83481 0.83719 0.92125 0.87100 0.89160 0.89003 0.87582 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 9 C 0.03 0.82 4.98 -27.89 -0.14 0.69 16 10 C -0.59 -12.77 4.47 37.15 0.17 -12.60 16 11 S 2.57 52.54 5.17 -107.50 -0.56 51.99 16 12 O -0.94 -21.63 18.09 -67.04 -1.21 -22.84 16 13 O -0.96 -20.80 16.27 -67.04 -1.09 -21.89 16 14 O -0.67 -11.67 9.86 -54.19 -0.53 -12.20 16 15 C 0.08 1.30 4.80 -39.15 -0.19 1.11 16 16 C -0.09 -1.14 9.05 -39.39 -0.36 -1.49 16 17 C -0.10 -0.94 10.04 -39.55 -0.40 -1.33 16 18 C -0.11 -1.08 10.00 -39.43 -0.39 -1.47 16 19 C 0.08 1.07 5.73 -39.33 -0.23 0.84 16 20 C 0.06 0.86 4.87 -39.22 -0.19 0.67 16 21 O -0.30 -4.65 7.18 -46.99 -0.34 -4.99 16 22 C 0.06 0.61 6.52 36.69 0.24 0.85 16 23 C -0.19 -1.65 5.92 -27.68 -0.16 -1.81 16 24 C 0.06 0.51 6.51 36.68 0.24 0.75 16 25 O -0.31 -3.87 10.16 -36.79 -0.37 -4.25 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.13 2.69 6.01 -51.92 -0.31 2.38 16 30 H 0.13 2.50 8.11 -51.92 -0.42 2.08 16 31 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 34 H 0.06 0.56 7.94 -51.93 -0.41 0.15 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.41 7.93 -51.93 -0.41 0.00 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -36.76 337.40 -10.03 -46.79 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.90 Total: -0.78 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -1.82 Total: -27.28 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -3.55 Total: -66.17 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.56 Total: 51.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.76 -10.03 -46.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849403042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.234 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds