Wall clock time and date at job start Tue Mar 31 2020 15:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99647 * 2 1 4 4 H 1.48500 * 109.46832 * 269.99558 * 3 2 1 5 5 H 1.48495 * 109.47341 * 29.99621 * 3 2 1 6 6 H 1.48502 * 109.46915 * 150.00027 * 3 2 1 7 7 C 1.37875 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99967 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47188 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47474 * 179.97438 * 10 9 7 12 12 O 1.42091 * 110.54066 * 68.37233 * 11 10 9 13 13 O 1.42103 * 110.53972 * 291.62768 * 11 10 9 14 14 O 1.52190 * 104.45176 * 180.02562 * 11 10 9 15 15 C 1.35999 * 114.00360 * 74.99780 * 14 11 10 16 16 C 1.38793 * 120.18536 * 89.99922 * 15 14 11 17 17 C 1.38212 * 120.15255 * 180.02562 * 16 15 14 18 18 C 1.38341 * 120.25534 * 359.96494 * 17 16 15 19 19 C 1.38554 * 119.80673 * 359.97438 * 18 17 16 20 20 C 1.38596 * 120.11467 * 0.05217 * 19 18 17 21 21 O 1.36554 * 119.64140 * 179.88737 * 20 19 18 22 22 C 1.42915 * 115.92271 * 68.36607 * 21 20 19 23 23 C 1.52082 * 110.71999 * 275.61621 * 22 21 20 24 24 C 1.52059 * 112.36189 * 64.82209 * 23 22 21 25 25 O 1.36482 * 120.29786 * 180.02562 * 19 18 17 26 26 H 0.97002 * 120.00454 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47166 * 59.99515 * 9 7 2 28 28 H 1.08996 * 109.46751 * 299.99667 * 9 7 2 29 29 H 1.09002 * 109.47013 * 59.99973 * 10 9 7 30 30 H 1.09007 * 109.47534 * 300.00312 * 10 9 7 31 31 H 1.07997 * 119.92134 * 359.97438 * 16 15 14 32 32 H 1.07999 * 119.87055 * 179.97438 * 17 16 15 33 33 H 1.08004 * 120.09888 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.22388 * 35.96377 * 22 21 20 35 35 H 1.09002 * 109.22048 * 155.34983 * 22 21 20 36 36 H 1.09003 * 108.93834 * 304.05579 * 23 22 21 37 37 H 1.08996 * 108.86735 * 185.54395 * 23 22 21 38 38 H 1.09002 * 109.21622 * 174.79819 * 24 23 22 39 39 H 1.09003 * 109.21481 * 55.42204 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 0.0013 12 8 0.6640 -5.4200 -1.2353 13 8 0.6648 -5.4193 1.2386 14 8 2.4249 -6.2988 0.0019 15 6 3.0450 -6.4560 1.2020 16 6 2.5517 -7.3638 2.1288 17 6 3.1821 -7.5226 3.3485 18 6 4.3083 -6.7791 3.6531 19 6 4.8053 -5.8725 2.7307 20 6 4.1757 -5.7099 1.5068 21 8 4.6724 -4.8120 0.6058 22 6 5.9373 -5.1415 0.0279 23 6 7.0751 -4.6953 0.9330 24 6 7.0858 -5.4401 2.2587 25 8 5.9160 -5.1342 3.0206 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8895 31 1 1.6727 -7.9467 1.8967 32 1 2.7941 -8.2300 4.0664 33 1 4.7987 -6.9049 4.6071 34 1 5.9955 -6.2202 -0.1174 35 1 6.0313 -4.6440 -0.9374 36 1 6.9737 -3.6278 1.1286 37 1 8.0216 -4.8706 0.4218 38 1 7.9698 -5.1495 2.8263 39 1 7.1190 -6.5127 2.0673 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849403042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:24 Heat of formation + Delta-G solvation = -177.028180 kcal Electronic energy + Delta-G solvation = -27259.245065 eV Core-core repulsion = 23259.793265 eV Total energy + Delta-G solvation = -3999.451800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.65140 -40.98517 -38.71469 -38.41100 -38.06545 -37.30295 -35.93677 -33.95804 -33.17649 -31.24204 -30.36765 -27.79843 -27.48286 -24.92264 -23.84578 -23.31532 -22.87916 -21.54971 -19.86787 -19.40459 -18.97063 -18.66384 -18.42717 -17.59739 -17.45121 -16.60166 -16.56728 -16.41663 -16.39620 -15.94243 -15.43333 -15.18419 -15.14551 -14.54711 -14.37752 -14.23775 -13.97927 -13.74567 -13.44966 -13.40554 -13.31431 -13.15384 -12.95520 -12.90385 -12.81583 -12.31926 -12.23770 -12.08869 -11.88541 -11.76240 -11.43922 -11.14215 -11.11619 -10.65480 -9.98685 -9.72958 -8.26789 -6.40309 -1.09824 -0.14825 -0.07134 1.04268 1.38408 1.41088 1.52424 2.10512 2.30298 2.35951 2.48970 2.63183 2.86897 3.06147 3.53076 3.69508 3.72576 3.79899 3.90836 4.00448 4.02193 4.11852 4.19599 4.29381 4.34116 4.36080 4.61076 4.70696 4.80284 4.83668 4.92491 5.06815 5.10430 5.14145 5.23612 5.24571 5.43543 5.67195 5.98620 6.05633 6.35862 6.71309 7.28924 8.85831 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.005198 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.298157 B = 5385.834065 C = 6770.060913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.587 4.587 11 S 2.597 3.403 12 O -0.971 6.971 13 O -0.977 6.977 14 O -0.657 6.657 15 C 0.033 3.967 16 C -0.099 4.099 17 C -0.082 4.082 18 C -0.089 4.089 19 C 0.070 3.930 20 C 0.043 3.957 21 O -0.337 6.337 22 C 0.043 3.957 23 C -0.185 4.185 24 C 0.052 3.948 25 O -0.330 6.330 26 H 0.268 0.732 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.157 0.843 32 H 0.193 0.807 33 H 0.182 0.818 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.893 -17.639 7.478 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.575 4.575 8 H 0.088 0.912 9 C -0.012 4.012 10 C -0.718 4.718 11 S 2.698 3.302 12 O -0.970 6.970 13 O -0.975 6.975 14 O -0.616 6.616 15 C -0.009 4.009 16 C -0.119 4.119 17 C -0.099 4.099 18 C -0.108 4.108 19 C 0.026 3.974 20 C -0.004 4.004 21 O -0.254 6.254 22 C -0.031 4.031 23 C -0.223 4.223 24 C -0.022 4.022 25 O -0.247 6.247 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.210 0.790 33 H 0.199 0.801 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.186 -17.827 7.311 25.819 hybrid contribution 0.231 1.480 -0.815 1.706 sum 17.417 -16.347 6.496 24.755 Atomic orbital electron populations 1.70095 1.07957 1.28370 1.50817 1.26092 0.95897 1.03722 0.94287 0.85308 0.78559 0.77628 0.78729 1.19380 1.20434 1.18533 1.21416 0.93721 0.90683 1.51636 0.91207 1.18809 0.93193 0.92682 0.96508 1.30399 1.12430 1.16707 1.12245 1.05336 0.74806 0.76656 0.73435 1.93522 1.71860 1.85092 1.46494 1.93531 1.73594 1.84154 1.46262 1.85693 1.64235 1.70277 1.41389 1.18523 0.97185 1.02265 0.82916 1.21721 1.00685 0.96171 0.93347 1.21508 0.93669 0.99608 0.95132 1.21785 0.96860 0.91542 1.00580 1.19137 0.91135 0.94912 0.92251 1.19555 0.95582 0.93432 0.91818 1.86509 1.38657 1.43322 1.56924 1.23076 0.80805 1.01818 0.97402 1.22487 1.00432 1.02424 0.96928 1.23008 0.86388 1.00273 0.92537 1.86404 1.18085 1.58856 1.61332 0.92284 0.97212 0.97188 0.84700 0.84358 0.82538 0.79017 0.80101 0.90865 0.86513 0.91231 0.85607 0.85007 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.29 21.45 0.28 -57.93 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 9 C 0.03 1.50 4.98 29.85 0.15 1.65 16 10 C -0.59 -26.36 4.47 71.98 0.32 -26.04 16 11 S 2.60 110.06 5.17 -56.49 -0.29 109.76 16 12 O -0.97 -46.54 18.09 -118.57 -2.15 -48.68 16 13 O -0.98 -43.34 16.27 -118.57 -1.93 -45.27 16 14 O -0.66 -23.42 9.86 -60.60 -0.60 -24.02 16 15 C 0.03 1.04 4.80 22.55 0.11 1.15 16 16 C -0.10 -2.41 9.05 22.40 0.20 -2.20 16 17 C -0.08 -1.32 10.04 22.29 0.22 -1.09 16 18 C -0.09 -1.50 10.00 22.37 0.22 -1.28 16 19 C 0.07 1.69 5.73 22.43 0.13 1.82 16 20 C 0.04 1.26 4.87 22.50 0.11 1.37 16 21 O -0.34 -10.36 7.18 -75.62 -0.54 -10.90 16 22 C 0.04 0.89 6.52 71.68 0.47 1.35 16 23 C -0.19 -2.90 5.92 29.98 0.18 -2.72 16 24 C 0.05 0.75 6.51 71.67 0.47 1.21 16 25 O -0.33 -7.57 10.16 -84.29 -0.86 -8.43 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.13 5.86 6.01 -2.39 -0.01 5.85 16 30 H 0.14 5.72 8.11 -2.39 -0.02 5.70 16 31 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.07 1.29 7.94 -2.39 -0.02 1.27 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.13 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.08 0.83 7.93 -2.39 -0.02 0.81 16 Total: -1.00 -82.69 337.40 0.29 -82.40 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.07 Total: 11.80 kcal Atomic # 6 Polarization: -58.93 SS G_CDS: 3.27 Total: -55.65 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.28 Total: -57.93 kcal Atomic # 8 Polarization: -131.23 SS G_CDS: -6.07 Total: -137.30 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 110.06 SS G_CDS: -0.29 Total: 109.76 kcal Total: -82.69 0.29 -82.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849403042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.631 kcal (2) G-P(sol) polarization free energy of solvation -82.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds