Wall clock time and date at job start Tue Mar 31 2020 15:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00300 * 2 1 4 4 H 1.48501 * 109.47615 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47259 * 300.00335 * 3 2 1 6 6 H 1.48501 * 109.47014 * 59.99870 * 3 2 1 7 7 C 1.37883 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00160 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99499 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47244 * 180.02562 * 9 7 2 11 11 O 1.45197 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.34767 * 117.00115 * 179.97438 * 11 10 9 13 13 O 1.21511 * 119.99631 * 0.02562 * 12 11 10 14 14 C 1.47511 * 120.00261 * 179.97438 * 12 11 10 15 15 C 1.41820 * 120.37652 * 0.02562 * 14 12 11 16 16 C 1.34523 * 120.14458 * 179.97438 * 15 14 12 17 17 N 1.36744 * 120.95908 * 0.02562 * 16 15 14 18 18 C 1.36410 * 132.25622 * 179.97438 * 17 16 15 19 19 C 1.35471 * 107.22111 * 179.97438 * 18 17 16 20 20 C 1.50703 * 125.68760 * 179.97438 * 19 18 17 21 21 F 1.39905 * 109.47157 * 90.00040 * 20 19 18 22 22 F 1.39900 * 109.47159 * 330.00340 * 20 19 18 23 23 F 1.39897 * 109.47274 * 210.00032 * 20 19 18 24 24 N 1.33163 * 108.62372 * 0.22967 * 19 18 17 25 25 C 1.32665 * 109.11935 * 359.61912 * 24 19 18 26 26 C 1.38509 * 120.38024 * 180.02562 * 14 12 11 27 27 H 0.97004 * 119.99448 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47283 * 60.00004 * 9 7 2 29 29 H 1.09003 * 109.47042 * 299.99832 * 9 7 2 30 30 H 1.08999 * 109.47279 * 59.99632 * 10 9 7 31 31 H 1.09003 * 109.46663 * 299.99695 * 10 9 7 32 32 H 1.08004 * 119.93228 * 359.97438 * 15 14 12 33 33 H 1.07995 * 119.51874 * 180.02562 * 16 15 14 34 34 H 1.07998 * 126.38722 * 0.02647 * 18 17 16 35 35 H 1.08003 * 120.45697 * 0.04447 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5191 -4.9195 -0.0011 12 6 2.2531 -6.0498 -0.0018 13 8 3.4665 -5.9862 -0.0013 14 6 1.5834 -7.3641 -0.0018 15 6 0.1677 -7.4477 -0.0018 16 6 -0.4382 -8.6487 -0.0024 17 7 0.2919 -9.8049 -0.0025 18 6 -0.0719 -11.1196 -0.0026 19 6 1.0682 -11.8513 -0.0033 20 6 1.1469 -13.3563 -0.0030 21 9 1.1704 -13.8222 -1.3220 22 9 0.0310 -13.8816 0.6573 23 9 2.3124 -13.7622 0.6557 24 7 2.1076 -11.0190 0.0015 25 6 1.6634 -9.7690 -0.0031 26 6 2.3300 -8.5308 -0.0019 27 1 -0.4849 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 2.8719 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8906 32 1 -0.4255 -6.5450 -0.0013 33 1 -1.5169 -8.7006 -0.0028 34 1 -1.0808 -11.5052 -0.0030 35 1 3.4093 -8.4900 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850168446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:53 Heat of formation + Delta-G solvation = -149.093561 kcal Electronic energy + Delta-G solvation = -25995.756656 eV Core-core repulsion = 21352.508252 eV Total energy + Delta-G solvation = -4643.248404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.47595 -48.03382 -47.92506 -43.53986 -40.21529 -37.82225 -36.33453 -34.24804 -33.44475 -31.67146 -30.41995 -29.74843 -27.35937 -25.48254 -24.31638 -23.66073 -22.15491 -21.36836 -20.79780 -18.96304 -18.87085 -18.72091 -18.10320 -17.78930 -16.72202 -16.60715 -16.25090 -16.05493 -15.94127 -15.10429 -15.06178 -14.83163 -14.70314 -14.58955 -14.39465 -14.10641 -14.09460 -13.78473 -13.54001 -13.04816 -12.86749 -12.46712 -12.44569 -12.32762 -11.59952 -11.31653 -11.16141 -10.92763 -10.87467 -10.82676 -10.52572 -9.80595 -9.76549 -9.65167 -9.38405 -8.53392 -8.50949 -6.18965 -4.23373 -0.10954 0.43741 1.73362 1.83732 2.22052 2.29969 2.68895 3.16664 3.19183 3.22408 3.30392 3.34912 3.43830 3.96829 4.04319 4.08449 4.17075 4.31316 4.43411 4.49615 4.62091 5.03717 5.13259 5.18304 5.42277 5.57186 5.64295 5.76868 5.92721 5.95793 6.30629 6.49911 6.70743 6.97922 7.43306 7.50300 7.75039 7.92953 8.13822 8.82256 9.41730 10.92484 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.043623 B = 0.001905 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.715311 B =14694.796848 C =15151.412834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.348 6.348 12 C 0.505 3.495 13 O -0.502 6.502 14 C -0.090 4.090 15 C -0.085 4.085 16 C 0.041 3.959 17 N -0.349 5.349 18 C -0.018 4.018 19 C -0.041 4.041 20 C 0.558 3.442 21 F -0.170 7.170 22 F -0.170 7.170 23 F -0.164 7.164 24 N -0.437 5.437 25 C 0.223 3.777 26 C 0.002 3.998 27 H 0.263 0.737 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.201 0.799 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -25.095 0.002 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.264 6.264 12 C 0.348 3.652 13 O -0.392 6.392 14 C -0.097 4.097 15 C -0.105 4.105 16 C -0.079 4.079 17 N -0.019 5.019 18 C -0.155 4.155 19 C -0.177 4.177 20 C 0.502 3.498 21 F -0.151 7.151 22 F -0.152 7.152 23 F -0.145 7.145 24 N -0.156 5.156 25 C -0.020 4.020 26 C -0.018 4.018 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.194 0.806 33 H 0.196 0.804 34 H 0.218 0.782 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.249 -25.155 0.010 25.364 hybrid contribution -0.338 0.978 -0.008 1.035 sum -3.588 -24.177 0.002 24.441 Atomic orbital electron populations 1.69972 1.06100 1.26983 1.49736 1.24981 0.94935 0.99451 0.94771 0.86409 0.80081 0.83056 0.77746 1.19548 1.20804 1.20799 1.21000 0.93267 0.89994 1.52274 0.92119 1.19191 0.94178 0.88925 0.98952 1.23778 0.96526 0.77994 1.01377 1.86563 1.41878 1.15541 1.82437 1.20579 0.85560 0.85185 0.73872 1.90860 1.14726 1.88194 1.45376 1.19320 0.93656 0.91318 1.05419 1.21217 0.93799 0.97917 0.97522 1.21635 0.98408 0.82609 1.05254 1.42860 1.08824 1.06269 1.43923 1.22331 1.00951 0.80623 1.11600 1.20441 0.91127 0.93569 1.12573 1.16840 0.74007 0.84878 0.74082 1.93249 1.96135 1.89906 1.35805 1.93217 1.52960 1.87920 1.81084 1.93243 1.48757 1.91608 1.80869 1.70413 1.28697 0.97179 1.19271 1.20523 0.79889 0.93956 1.07670 1.20736 1.01970 0.85761 0.93318 0.92705 0.95252 0.95262 0.91900 0.91912 0.80614 0.80396 0.78213 0.80914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.60 5.35 -27.89 -0.15 0.45 16 10 C 0.08 1.54 5.41 37.16 0.20 1.74 16 11 O -0.35 -6.10 9.52 -40.68 -0.39 -6.49 16 12 C 0.50 7.91 7.90 34.51 0.27 8.18 16 13 O -0.50 -9.09 16.15 -19.27 -0.31 -9.40 16 14 C -0.09 -1.06 5.90 -104.65 -0.62 -1.68 16 15 C -0.08 -0.75 9.56 -39.53 -0.38 -1.13 16 16 C 0.04 0.28 10.91 -16.67 -0.18 0.10 16 17 N -0.35 -3.15 2.94 -62.75 -0.18 -3.33 16 18 C -0.02 -0.14 11.30 -16.50 -0.19 -0.33 16 19 C -0.04 -0.43 6.42 -83.00 -0.53 -0.96 16 20 C 0.56 5.28 3.54 36.01 0.13 5.41 16 21 F -0.17 -1.65 17.30 2.25 0.04 -1.61 16 22 F -0.17 -1.38 17.01 2.25 0.04 -1.34 16 23 F -0.16 -1.78 17.25 2.25 0.04 -1.74 16 24 N -0.44 -5.51 11.24 -9.02 -0.10 -5.61 16 25 C 0.22 2.56 7.79 -155.96 -1.22 1.35 16 26 C 0.00 0.02 9.70 -38.58 -0.37 -0.35 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.18 1.39 7.66 -52.48 -0.40 0.99 16 33 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.20 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.17 1.92 7.67 -52.48 -0.40 1.52 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -31.72 333.96 -6.45 -38.17 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -2.88 Total: -4.63 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.45 Total: -0.14 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.45 Total: -33.56 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.70 Total: -15.89 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.12 Total: -4.70 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.72 -6.45 -38.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850168446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.927 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds