Wall clock time and date at job start Tue Mar 31 2020 14:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00239 * 2 1 4 4 H 1.48497 * 109.47180 * 270.00208 * 3 2 1 5 5 H 1.48499 * 109.46825 * 29.99972 * 3 2 1 6 6 H 1.48498 * 109.47143 * 149.99937 * 3 2 1 7 7 C 1.37877 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00594 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99919 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 60.09647 * 9 7 2 11 11 C 1.53120 * 109.50009 * 299.99707 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 15 15 C 1.46892 * 111.00192 * 185.84212 * 14 13 12 16 16 C 1.53000 * 109.47415 * 66.05041 * 15 14 13 17 17 N 1.46497 * 109.47543 * 180.02562 * 16 15 14 18 18 C 1.34417 * 126.81925 * 124.70341 * 17 16 15 19 19 N 1.30843 * 108.09695 * 179.86672 * 18 17 16 20 20 C 1.33292 * 109.81650 * 0.41212 * 19 18 17 21 21 Br 1.89106 * 125.53688 * 179.78310 * 20 19 18 22 22 N 1.30778 * 108.93046 * 359.74039 * 20 19 18 23 23 C 1.46848 * 111.19688 * 61.74516 * 14 13 12 24 24 H 0.96996 * 119.99509 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 26 26 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 27 27 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 28 28 H 1.09002 * 109.50248 * 297.64565 * 12 11 9 29 29 H 1.08997 * 109.46051 * 60.83848 * 13 12 11 30 30 H 1.09006 * 109.46001 * 180.81597 * 13 12 11 31 31 H 1.09001 * 109.47233 * 186.04625 * 15 14 13 32 32 H 1.09000 * 109.47464 * 306.04297 * 15 14 13 33 33 H 1.09001 * 109.46580 * 299.99983 * 16 15 14 34 34 H 1.09000 * 109.47412 * 59.99223 * 16 15 14 35 35 H 1.08005 * 125.94801 * 0.02562 * 18 17 16 36 36 H 1.08999 * 109.46555 * 58.27446 * 23 14 13 37 37 H 1.08998 * 109.46337 * 178.25654 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1942 0.0000 10 1 3.8757 -0.6826 0.8910 11 6 4.0232 -0.4717 -1.2493 12 6 5.5532 -0.5286 -1.2732 13 6 6.0049 -1.9905 -1.2420 14 7 5.4921 -2.6368 -0.0272 15 6 6.0202 -4.0010 0.1062 16 6 7.5318 -3.9427 0.3355 17 7 8.0585 -5.3033 0.4680 18 6 9.0461 -5.8588 -0.2552 19 7 9.2212 -7.0839 0.1695 20 6 8.3612 -7.3485 1.1529 21 35 8.2249 -8.9901 2.0817 22 7 7.6277 -6.2882 1.3718 23 6 4.0238 -2.6364 -0.0050 24 1 -0.4849 0.8400 0.0004 25 1 3.6977 0.5683 -1.2277 26 1 3.6266 -0.9591 -2.1399 27 1 5.9209 -0.0535 -2.1826 28 1 5.9504 -0.0058 -0.4031 29 1 5.6188 -2.5087 -2.1197 30 1 7.0941 -2.0342 -1.2442 31 1 5.5431 -4.4941 0.9532 32 1 5.8122 -4.5620 -0.8050 33 1 8.0089 -3.4497 -0.5115 34 1 7.7397 -3.3818 1.2467 35 1 9.6004 -5.3767 -1.0470 36 1 3.6470 -3.1516 -0.8885 37 1 3.6740 -3.1489 0.8912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852318989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:00 Heat of formation + Delta-G solvation = 99.998917 kcal Electronic energy + Delta-G solvation = -19862.542842 eV Core-core repulsion = 16723.217949 eV Total energy + Delta-G solvation = -3139.324893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.45881 -38.80008 -35.48772 -33.53601 -32.34038 -32.01741 -31.03007 -30.42699 -28.55984 -25.09831 -24.55009 -22.51206 -22.30915 -21.63774 -20.73302 -19.02803 -17.61775 -16.77214 -16.36341 -15.69159 -15.37727 -15.06406 -14.54230 -14.19485 -14.04781 -13.59592 -13.42582 -13.17090 -12.78770 -12.42757 -12.26273 -12.13941 -11.49434 -11.29342 -11.13749 -11.07939 -11.04021 -10.63046 -10.40858 -10.24054 -10.15931 -10.02698 -9.79961 -9.70643 -9.19242 -9.00946 -8.56510 -8.09496 -6.11182 -4.11027 0.62898 1.15718 2.07629 2.35952 3.23897 3.35733 3.38231 3.87201 4.20636 4.23055 4.37840 4.71360 4.75884 5.03311 5.17370 5.24389 5.29962 5.41402 5.58486 5.63335 5.70738 5.82364 5.88106 6.02109 6.15189 6.17909 6.33373 6.36549 6.49850 6.67736 6.73031 7.08945 7.22258 7.35809 7.50043 7.55454 7.77040 8.46784 8.91710 9.50945 11.02065 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.002461 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.946449 B =11373.998935 C =12141.345717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.036 0.964 11 C -0.124 4.124 12 C -0.119 4.119 13 C 0.057 3.943 14 N -0.538 5.538 15 C 0.046 3.954 16 C 0.128 3.872 17 N -0.362 5.362 18 C 0.263 3.737 19 N -0.525 5.525 20 C 0.212 3.788 21 Br 0.079 6.921 22 N -0.269 5.269 23 C 0.079 3.921 24 H 0.264 0.736 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.227 0.773 36 H 0.029 0.971 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.193 -13.241 -0.121 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.555 4.555 8 H 0.091 0.909 9 C 0.002 3.998 10 H 0.054 0.946 11 C -0.162 4.162 12 C -0.157 4.157 13 C -0.071 4.071 14 N -0.263 5.263 15 C -0.084 4.084 16 C 0.006 3.994 17 N -0.153 5.153 18 C -0.034 4.034 19 N -0.253 5.253 20 C -0.149 4.149 21 Br 0.158 6.842 22 N -0.101 5.101 23 C -0.048 4.048 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.243 0.757 36 H 0.047 0.953 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.784 -13.535 1.016 24.824 hybrid contribution 0.135 1.094 -1.223 1.647 sum 20.919 -12.441 -0.207 24.340 Atomic orbital electron populations 1.69900 1.06324 1.27002 1.50670 1.24990 0.94676 0.99066 0.94362 0.86817 0.80007 0.83460 0.77822 1.20723 1.22574 1.18806 1.20979 0.88687 0.94550 1.51250 0.90937 1.19160 0.96055 0.90807 0.93758 0.94553 1.22048 0.92518 1.00430 1.01186 1.21649 0.98263 0.94798 1.01009 1.22116 0.98259 0.96019 0.90717 1.61969 1.11288 1.15113 1.37962 1.22236 0.92453 0.91682 1.01990 1.22095 0.96347 0.75960 1.04975 1.50690 1.26743 1.12587 1.25329 1.26150 0.90764 0.89509 0.97006 1.70462 1.26204 1.14884 1.13784 1.25603 0.95895 0.95332 0.98059 1.96832 1.97770 1.17535 1.72053 1.78292 1.21627 0.97034 1.13153 1.22116 0.82482 1.00029 1.00126 0.92621 0.93392 0.92493 0.92610 0.91667 0.95026 0.91914 0.89242 0.94589 0.87579 0.87700 0.75662 0.95273 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 3 Si 0.89 21.55 24.35 -169.99 -4.14 17.41 16 4 H -0.28 -6.60 6.89 56.52 0.39 -6.21 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.10 6.53 56.52 0.37 -5.73 16 7 C -0.52 -14.10 9.15 -34.44 -0.32 -14.42 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C 0.02 0.48 1.85 -91.68 -0.17 0.31 16 10 H 0.04 0.86 7.21 -51.93 -0.37 0.49 16 11 C -0.12 -2.53 4.73 -26.61 -0.13 -2.65 16 12 C -0.12 -1.87 6.10 -26.65 -0.16 -2.03 16 13 C 0.06 0.76 5.29 -3.84 -0.02 0.74 16 14 N -0.54 -8.13 4.66 -234.67 -1.09 -9.22 16 15 C 0.05 0.57 5.17 -3.83 -0.02 0.55 16 16 C 0.13 1.19 6.49 -4.04 -0.03 1.16 16 17 N -0.36 -3.85 3.69 -62.63 -0.23 -4.08 16 18 C 0.26 2.36 12.62 -90.66 -1.14 1.22 16 19 N -0.52 -6.28 11.19 -14.21 -0.16 -6.44 16 20 C 0.21 2.70 8.69 -91.71 -0.80 1.91 16 21 Br 0.08 0.83 34.13 -68.01 -2.32 -1.49 16 22 N -0.27 -3.61 12.57 30.61 0.38 -3.23 16 23 C 0.08 1.50 4.68 -3.83 -0.02 1.49 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.05 1.05 3.34 -51.93 -0.17 0.87 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.63 6.22 -51.93 -0.32 0.31 16 31 H 0.09 1.26 7.98 -51.93 -0.41 0.85 16 32 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.11 0.68 6.38 -51.93 -0.33 0.35 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.23 0.86 8.06 -52.48 -0.42 0.43 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.37 8.01 -51.93 -0.42 0.95 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -31.91 315.78 -9.93 -41.84 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -5.01 Total: -3.25 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.90 Total: -9.82 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.32 Total: -49.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Atomic # 35 Polarization: 0.83 SS G_CDS: -2.32 Total: -1.49 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.91 -9.93 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852318989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.840 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds