Wall clock time and date at job start Tue Mar 31 2020 14:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48499 * 109.47638 * 240.00181 * 3 2 1 5 5 H 1.48505 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47224 * 120.00015 * 3 2 1 7 7 C 1.37880 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00049 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.54240 * 300.10515 * 9 7 2 11 11 C 1.53129 * 109.50308 * 60.16172 * 9 7 2 12 12 C 1.53123 * 109.15931 * 177.55494 * 11 9 7 13 13 C 1.53039 * 109.31189 * 302.40768 * 12 11 9 14 14 N 1.46842 * 109.52266 * 59.15550 * 13 12 11 15 15 C 1.46910 * 110.99703 * 174.16402 * 14 13 12 16 16 C 1.53001 * 109.47153 * 66.04611 * 15 14 13 17 17 N 1.46493 * 109.46976 * 180.02562 * 16 15 14 18 18 C 1.34416 * 126.81744 * 125.00043 * 17 16 15 19 19 N 1.30845 * 108.09763 * 179.97438 * 18 17 16 20 20 C 1.33295 * 109.81914 * 0.02562 * 19 18 17 21 21 Br 1.89101 * 125.53495 * 180.02562 * 20 19 18 22 22 N 1.30776 * 108.92538 * 359.73457 * 20 19 18 23 23 C 1.46849 * 111.20050 * 298.25785 * 14 13 12 24 24 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.49266 * 57.67185 * 11 9 7 26 26 H 1.08995 * 109.55725 * 297.47932 * 11 9 7 27 27 H 1.09002 * 109.50371 * 182.44317 * 12 11 9 28 28 H 1.09003 * 109.50070 * 62.36477 * 12 11 9 29 29 H 1.08995 * 109.46501 * 179.17754 * 13 12 11 30 30 H 1.09002 * 109.45552 * 299.15457 * 13 12 11 31 31 H 1.08996 * 109.46709 * 186.04933 * 15 14 13 32 32 H 1.09002 * 109.46552 * 306.04948 * 15 14 13 33 33 H 1.08995 * 109.47022 * 300.00315 * 16 15 14 34 34 H 1.09001 * 109.46710 * 59.99819 * 16 15 14 35 35 H 1.08002 * 125.94746 * 359.95825 * 18 17 16 36 36 H 1.09001 * 109.46071 * 181.75754 * 23 14 13 37 37 H 1.09002 * 109.46350 * 301.73871 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6229 -2.5575 0.8883 11 6 0.3730 -2.5825 -1.2523 12 6 -0.3419 -3.9364 -1.2754 13 6 0.6981 -5.0586 -1.2390 14 7 1.5111 -4.9348 -0.0224 15 6 2.4283 -6.0740 0.1159 16 6 3.4581 -6.0400 -1.0151 17 7 4.3723 -7.1763 -0.8775 18 6 4.6453 -8.1078 -1.8073 19 7 5.5087 -8.9491 -1.2987 20 6 5.8090 -8.5893 -0.0508 21 35 7.0116 -9.4937 1.0945 22 7 5.1416 -7.5058 0.2505 23 6 2.2448 -3.6629 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 0.9964 -2.4845 -2.1410 26 1 -0.3655 -1.7810 -1.2340 27 1 -0.9350 -4.0193 -2.1862 28 1 -0.9955 -4.0177 -0.4069 29 1 0.1914 -6.0236 -1.2406 30 1 1.3423 -4.9851 -2.1152 31 1 2.9408 -6.0132 1.0760 32 1 1.8625 -7.0042 0.0643 33 1 2.9455 -6.1007 -1.9751 34 1 4.0238 -5.1096 -0.9635 35 1 4.2249 -8.1538 -2.8011 36 1 2.8614 -3.6143 0.8964 37 1 2.8816 -3.5961 -0.8833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852318990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:04 Heat of formation + Delta-G solvation = 92.726325 kcal Electronic energy + Delta-G solvation = -20004.958939 eV Core-core repulsion = 16865.318683 eV Total energy + Delta-G solvation = -3139.640257 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.38518 -38.79155 -35.22663 -33.47680 -32.26820 -31.80661 -30.86114 -30.02035 -28.02737 -25.06674 -24.63795 -22.47112 -22.08864 -21.53912 -20.93212 -18.68415 -17.43838 -16.55871 -16.16441 -15.42937 -15.06565 -14.87256 -14.42804 -14.37775 -14.08965 -13.32588 -13.23002 -12.68980 -12.57661 -12.29236 -12.08777 -11.77900 -11.51043 -11.24245 -10.99005 -10.96633 -10.75437 -10.67999 -10.34462 -10.25827 -10.12970 -9.93764 -9.70467 -9.58002 -9.18770 -8.81842 -8.37935 -7.89247 -6.04194 -4.10944 0.68220 1.23986 2.16704 2.42792 3.28061 3.33307 3.35571 4.02856 4.23978 4.31773 4.44848 4.74088 4.85770 5.05627 5.26120 5.35978 5.50811 5.55097 5.61940 5.87862 5.89405 5.92710 6.08752 6.20701 6.35857 6.42701 6.55289 6.61412 6.81827 7.07915 7.24865 7.43349 7.56284 7.58977 7.68837 7.97953 8.08092 8.38421 8.92685 9.54005 11.01800 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.002619 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.051387 B =10688.564462 C =11542.650832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.112 4.112 12 C -0.118 4.118 13 C 0.056 3.944 14 N -0.527 5.527 15 C 0.050 3.950 16 C 0.083 3.917 17 N -0.356 5.356 18 C 0.260 3.740 19 N -0.525 5.525 20 C 0.210 3.790 21 Br 0.077 6.923 22 N -0.270 5.270 23 C 0.061 3.939 24 H 0.261 0.739 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.226 0.774 36 H 0.063 0.937 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 -18.709 -2.976 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.156 4.156 13 C -0.071 4.071 14 N -0.250 5.250 15 C -0.080 4.080 16 C -0.040 4.040 17 N -0.147 5.147 18 C -0.037 4.037 19 N -0.254 5.254 20 C -0.150 4.150 21 Br 0.157 6.843 22 N -0.102 5.102 23 C -0.066 4.066 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.759 -18.722 -1.659 20.736 hybrid contribution 0.619 1.243 -1.301 1.903 sum 9.378 -17.478 -2.960 20.055 Atomic orbital electron populations 1.69869 1.05854 1.26568 1.50319 1.24922 0.94829 0.98979 0.94981 0.86687 0.79638 0.83234 0.78611 1.20367 1.21266 1.20241 1.21082 0.92778 0.90624 1.51215 0.92882 1.18662 0.92546 0.90172 0.94963 0.94645 1.21680 1.00117 0.94753 0.98449 1.21686 0.97147 0.96279 1.00492 1.22145 0.95764 0.99282 0.89938 1.62298 1.22646 1.02161 1.37852 1.22515 0.92198 0.95825 0.97482 1.23068 0.91039 0.86462 1.03433 1.50687 1.32174 1.22492 1.09386 1.26145 0.94354 0.85844 0.97359 1.70455 1.17733 1.29272 1.07956 1.25572 1.00716 0.95114 0.93625 1.96814 1.54678 1.74056 1.58795 1.78278 1.09161 1.15340 1.07401 1.22444 0.96701 0.88352 0.99063 0.92910 0.95109 0.88955 0.93302 0.91904 0.92107 0.95690 0.89358 0.90772 0.87692 0.88099 0.75770 0.91803 0.95916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 11.36 55.43 0.63 -23.95 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.64 8.56 -34.44 -0.29 -13.93 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.06 1.30 2.26 -91.69 -0.21 1.10 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.46 5.03 -26.60 -0.13 -2.60 16 12 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 13 C 0.06 0.84 5.05 -3.84 -0.02 0.82 16 14 N -0.53 -8.58 4.86 -234.66 -1.14 -9.72 16 15 C 0.05 0.66 5.57 -3.82 -0.02 0.64 16 16 C 0.08 0.95 5.85 -4.04 -0.02 0.93 16 17 N -0.36 -4.28 3.69 -62.64 -0.23 -4.51 16 18 C 0.26 2.67 12.62 -90.65 -1.14 1.52 16 19 N -0.53 -6.75 11.19 -14.21 -0.16 -6.91 16 20 C 0.21 2.85 8.69 -91.71 -0.80 2.05 16 21 Br 0.08 0.85 34.13 -68.01 -2.32 -1.47 16 22 N -0.27 -3.87 12.58 30.61 0.39 -3.49 16 23 C 0.06 1.17 4.06 -3.83 -0.02 1.15 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 2.32 6.16 -51.93 -0.32 2.00 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 30 H 0.02 0.34 6.75 -51.93 -0.35 -0.01 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 0.91 8.06 -51.93 -0.42 0.50 16 33 H 0.10 0.95 6.63 -51.93 -0.34 0.61 16 34 H 0.10 1.29 6.51 -51.93 -0.34 0.95 16 35 H 0.23 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 37 H 0.02 0.42 6.61 -51.93 -0.34 0.08 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -29.37 319.49 -10.99 -40.36 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.03 Total: -1.90 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.91 Total: -8.93 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.52 Total: -48.58 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 35 Polarization: 0.85 SS G_CDS: -2.32 Total: -1.47 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.37 -10.99 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852318990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.083 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds