Wall clock time and date at job start Tue Mar 31 2020 14:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48499 * 109.47638 * 240.00181 * 3 2 1 5 5 H 1.48505 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47224 * 120.00015 * 3 2 1 7 7 C 1.37880 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00049 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.54240 * 300.10515 * 9 7 2 11 11 C 1.53129 * 109.50308 * 60.16172 * 9 7 2 12 12 C 1.53123 * 109.15931 * 177.55494 * 11 9 7 13 13 C 1.53039 * 109.31189 * 302.40768 * 12 11 9 14 14 N 1.46842 * 109.52266 * 59.15550 * 13 12 11 15 15 C 1.46910 * 110.99703 * 174.16402 * 14 13 12 16 16 C 1.53001 * 109.47153 * 66.04611 * 15 14 13 17 17 N 1.46493 * 109.46976 * 180.02562 * 16 15 14 18 18 C 1.34416 * 126.81744 * 125.00043 * 17 16 15 19 19 N 1.30845 * 108.09763 * 179.97438 * 18 17 16 20 20 C 1.33295 * 109.81914 * 0.02562 * 19 18 17 21 21 Br 1.89101 * 125.53495 * 180.02562 * 20 19 18 22 22 N 1.30776 * 108.92538 * 359.73457 * 20 19 18 23 23 C 1.46849 * 111.20050 * 298.25785 * 14 13 12 24 24 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.49266 * 57.67185 * 11 9 7 26 26 H 1.08995 * 109.55725 * 297.47932 * 11 9 7 27 27 H 1.09002 * 109.50371 * 182.44317 * 12 11 9 28 28 H 1.09003 * 109.50070 * 62.36477 * 12 11 9 29 29 H 1.08995 * 109.46501 * 179.17754 * 13 12 11 30 30 H 1.09002 * 109.45552 * 299.15457 * 13 12 11 31 31 H 1.08996 * 109.46709 * 186.04933 * 15 14 13 32 32 H 1.09002 * 109.46552 * 306.04948 * 15 14 13 33 33 H 1.08995 * 109.47022 * 300.00315 * 16 15 14 34 34 H 1.09001 * 109.46710 * 59.99819 * 16 15 14 35 35 H 1.08002 * 125.94746 * 359.95825 * 18 17 16 36 36 H 1.09001 * 109.46071 * 181.75754 * 23 14 13 37 37 H 1.09002 * 109.46350 * 301.73871 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6229 -2.5575 0.8883 11 6 0.3730 -2.5825 -1.2523 12 6 -0.3419 -3.9364 -1.2754 13 6 0.6981 -5.0586 -1.2390 14 7 1.5111 -4.9348 -0.0224 15 6 2.4283 -6.0740 0.1159 16 6 3.4581 -6.0400 -1.0151 17 7 4.3723 -7.1763 -0.8775 18 6 4.6453 -8.1078 -1.8073 19 7 5.5087 -8.9491 -1.2987 20 6 5.8090 -8.5893 -0.0508 21 35 7.0116 -9.4937 1.0945 22 7 5.1416 -7.5058 0.2505 23 6 2.2448 -3.6629 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 0.9964 -2.4845 -2.1410 26 1 -0.3655 -1.7810 -1.2340 27 1 -0.9350 -4.0193 -2.1862 28 1 -0.9955 -4.0177 -0.4069 29 1 0.1914 -6.0236 -1.2406 30 1 1.3423 -4.9851 -2.1152 31 1 2.9408 -6.0132 1.0760 32 1 1.8625 -7.0042 0.0643 33 1 2.9455 -6.1007 -1.9751 34 1 4.0238 -5.1096 -0.9635 35 1 4.2249 -8.1538 -2.8011 36 1 2.8614 -3.6143 0.8964 37 1 2.8816 -3.5961 -0.8833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852318990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:03 Heat of formation + Delta-G solvation = 75.249277 kcal Electronic energy + Delta-G solvation = -20005.716801 eV Core-core repulsion = 16865.318683 eV Total energy + Delta-G solvation = -3140.398118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.26953 -40.14719 -36.52703 -34.96862 -33.50807 -32.95916 -31.82722 -31.68812 -29.12976 -26.94483 -25.81618 -23.49646 -23.26039 -22.91175 -22.14552 -20.14803 -18.57142 -18.21687 -17.27044 -16.72070 -16.26794 -16.14293 -15.92127 -15.39484 -15.16289 -14.88466 -14.54201 -14.12054 -13.94110 -13.78593 -13.25962 -13.10826 -12.87200 -12.72348 -12.53616 -12.44974 -12.06150 -11.86115 -11.76762 -11.65458 -11.38853 -11.25270 -11.09209 -10.87733 -10.66393 -10.61154 -10.37215 -9.14688 -8.08290 -6.22196 -0.21198 0.36280 1.31948 1.41576 1.42617 1.49830 1.55755 2.42317 3.04982 3.19222 3.23411 3.61516 3.76234 3.98102 4.11631 4.24834 4.26216 4.36566 4.51365 4.59518 4.66286 4.80578 4.87853 4.94078 4.98579 5.02486 5.12318 5.18917 5.42357 5.53477 5.63880 5.65358 5.95239 6.12305 6.21875 6.28409 6.44102 6.69659 6.91196 7.46044 8.95925 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.002619 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.051387 B =10688.564462 C =11542.650832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.052 3.948 10 H -0.009 1.009 11 C -0.105 4.105 12 C -0.113 4.113 13 C 0.060 3.940 14 N -0.542 5.542 15 C 0.058 3.942 16 C 0.092 3.908 17 N -0.362 5.362 18 C 0.277 3.723 19 N -0.549 5.549 20 C 0.200 3.800 21 Br 0.089 6.911 22 N -0.307 5.307 23 C 0.078 3.922 24 H 0.260 0.740 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.276 0.724 36 H 0.049 0.951 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.199 -20.175 -4.860 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.010 0.990 11 C -0.143 4.143 12 C -0.151 4.151 13 C -0.067 4.067 14 N -0.265 5.265 15 C -0.071 4.071 16 C -0.031 4.031 17 N -0.153 5.153 18 C -0.019 4.019 19 N -0.279 5.279 20 C -0.160 4.160 21 Br 0.168 6.832 22 N -0.140 5.140 23 C -0.049 4.049 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.158 0.842 34 H 0.103 0.897 35 H 0.291 0.709 36 H 0.067 0.933 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.248 -20.202 -3.544 22.499 hybrid contribution 0.457 1.666 -0.693 1.862 sum 9.705 -18.536 -4.237 21.347 Atomic orbital electron populations 1.70021 1.07114 1.27091 1.51148 1.25674 0.95600 1.02180 0.94859 0.85743 0.78472 0.79440 0.78779 1.19477 1.21064 1.20007 1.21505 0.92975 0.92258 1.50841 0.93067 1.18586 0.93004 0.91221 0.93891 0.99034 1.21470 0.99105 0.96424 0.97335 1.21599 0.97687 0.94791 1.00989 1.22182 0.95174 0.99413 0.89971 1.62141 1.23401 1.01614 1.39367 1.22369 0.92295 0.94953 0.97471 1.22958 0.90281 0.85808 1.04019 1.50656 1.32309 1.23031 1.09332 1.27146 0.92584 0.83898 0.98290 1.70484 1.19048 1.30473 1.07854 1.25889 1.00807 0.95083 0.94248 1.96804 1.54179 1.73673 1.58564 1.78215 1.10380 1.16164 1.09209 1.22030 0.95414 0.88596 0.98853 0.93096 0.95146 0.92745 0.90778 0.93649 0.88746 0.93425 0.91452 0.88968 0.84183 0.89712 0.70859 0.93283 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.23 11.36 21.45 0.24 -51.99 16 2 C 0.02 0.87 5.30 84.66 0.45 1.31 16 3 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.54 -28.91 8.56 25.60 0.22 -28.69 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 9 C 0.05 2.51 2.26 -11.49 -0.03 2.48 16 10 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 11 C -0.11 -4.66 5.03 30.68 0.15 -4.50 16 12 C -0.11 -3.81 6.09 30.65 0.19 -3.62 16 13 C 0.06 1.56 5.05 86.33 0.44 2.00 16 14 N -0.54 -16.72 4.86 -896.34 -4.35 -21.07 16 15 C 0.06 1.41 5.57 86.30 0.48 1.90 16 16 C 0.09 1.81 5.85 86.38 0.51 2.31 16 17 N -0.36 -7.71 3.69 -352.08 -1.30 -9.01 16 18 C 0.28 4.64 12.62 180.36 2.28 6.91 16 19 N -0.55 -12.83 11.19 -198.87 -2.23 -15.05 16 20 C 0.20 5.16 8.69 180.73 1.57 6.73 16 21 Br 0.09 1.88 34.13 -20.37 -0.70 1.18 16 22 N -0.31 -8.46 12.58 -57.06 -0.72 -9.18 16 23 C 0.08 3.00 4.06 86.32 0.35 3.35 16 24 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 2.82 6.16 -2.39 -0.01 2.80 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.94 8.06 -2.39 -0.02 1.92 16 30 H 0.05 1.07 6.75 -2.39 -0.02 1.05 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.94 8.06 -2.39 -0.02 1.93 16 33 H 0.14 1.78 6.63 -2.39 -0.02 1.76 16 34 H 0.08 1.98 6.51 -2.39 -0.02 1.96 16 35 H 0.28 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 37 H 0.03 1.19 6.61 -2.39 -0.02 1.17 16 Total: -1.00 -66.79 319.49 0.65 -66.14 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.07 Total: 3.77 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 6.60 Total: -9.82 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -8.35 Total: -106.30 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 35 Polarization: 1.88 SS G_CDS: -0.70 Total: 1.18 kcal Total: -66.79 0.65 -66.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852318990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.385 kcal (2) G-P(sol) polarization free energy of solvation -66.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds