Wall clock time and date at job start Tue Mar 31 2020 15:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86794 * 119.99888 * 2 1 4 4 H 1.48501 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47285 * 300.00238 * 3 2 1 6 6 H 1.48504 * 109.47279 * 60.00174 * 3 2 1 7 7 C 1.37878 * 119.99537 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99360 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00452 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50501 * 299.92343 * 9 7 2 11 11 C 1.53127 * 109.50380 * 59.99864 * 9 7 2 12 12 C 1.53118 * 109.16080 * 177.59731 * 11 9 7 13 13 C 1.53036 * 109.27675 * 302.34576 * 12 11 9 14 14 N 1.46850 * 109.52507 * 59.17776 * 13 12 11 15 15 C 1.39823 * 110.99872 * 174.15733 * 14 13 12 16 16 C 1.38887 * 120.03887 * 64.43449 * 15 14 13 17 17 C 1.38205 * 119.93602 * 179.97438 * 16 15 14 18 18 Cl 1.73589 * 119.98678 * 179.97438 * 17 16 15 19 19 C 1.38600 * 120.02338 * 0.02562 * 17 16 15 20 20 F 1.35099 * 119.95383 * 179.97438 * 19 17 16 21 21 C 1.38410 * 120.09056 * 359.97438 * 19 17 16 22 22 C 1.38164 * 120.05878 * 359.70750 * 21 19 17 23 23 N 1.48015 * 120.01206 * 180.27712 * 22 21 19 24 24 O 1.21800 * 119.99984 * 5.36768 * 23 22 21 25 25 O 1.21800 * 120.00038 * 185.36953 * 23 22 21 26 26 C 1.46842 * 111.19993 * 298.25778 * 14 13 12 27 27 H 0.96997 * 119.99716 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.52069 * 57.69066 * 11 9 7 29 29 H 1.08999 * 109.52106 * 297.50004 * 11 9 7 30 30 H 1.08995 * 109.50193 * 182.40171 * 12 11 9 31 31 H 1.09000 * 109.50049 * 62.28341 * 12 11 9 32 32 H 1.08997 * 109.45976 * 179.19837 * 13 12 11 33 33 H 1.09001 * 109.45986 * 299.16366 * 13 12 11 34 34 H 1.07994 * 120.03424 * 359.97438 * 16 15 14 35 35 H 1.07997 * 119.96743 * 179.97438 * 21 19 17 36 36 H 1.08997 * 109.46651 * 301.72832 * 26 14 13 37 37 H 1.08994 * 109.45307 * 181.74642 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6249 -2.5587 0.8885 11 6 0.3709 -2.5802 -1.2521 12 6 -0.3448 -3.9336 -1.2760 13 6 0.6953 -5.0558 -1.2445 14 7 1.5112 -4.9347 -0.0295 15 6 2.3843 -6.0193 0.0978 16 6 3.3884 -6.2175 -0.8410 17 6 4.2506 -7.2900 -0.7128 18 17 5.5057 -7.5393 -1.8859 19 6 4.1129 -8.1671 0.3515 20 9 4.9562 -9.2153 0.4751 21 6 3.1127 -7.9706 1.2877 22 6 2.2529 -6.8959 1.1666 23 7 1.1874 -6.6833 2.1718 24 8 1.1287 -7.3967 3.1573 25 8 0.3693 -5.7949 2.0135 26 6 2.2449 -3.6629 -0.0071 27 1 -0.4849 0.8400 -0.0004 28 1 0.9924 -2.4810 -2.1421 29 1 -0.3670 -1.7783 -1.2307 30 1 -0.9400 -4.0145 -2.1856 31 1 -0.9959 -4.0163 -0.4058 32 1 0.1885 -6.0208 -1.2470 33 1 1.3374 -4.9806 -2.1221 34 1 3.4954 -5.5342 -1.6705 35 1 3.0069 -8.6555 2.1160 36 1 2.8797 -3.5942 -0.8905 37 1 2.8634 -3.6164 0.8892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853761832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:36 Heat of formation + Delta-G solvation = -13.767020 kcal Electronic energy + Delta-G solvation = -26166.522235 eV Core-core repulsion = 22080.938710 eV Total energy + Delta-G solvation = -4085.583525 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.51772 -42.02221 -40.23771 -38.04131 -37.04214 -36.19863 -34.01830 -32.13248 -32.12223 -30.12131 -29.28330 -26.41036 -25.10326 -24.46325 -22.87749 -21.95186 -21.53614 -19.50119 -18.92737 -18.48003 -17.56252 -17.31190 -17.00463 -16.94305 -16.29008 -16.02816 -15.01493 -14.73151 -14.71249 -14.38615 -13.94137 -13.61109 -13.39573 -12.85720 -12.72273 -12.67714 -12.47873 -12.04257 -11.85059 -11.57850 -11.25880 -11.03481 -10.93760 -10.88089 -10.76505 -10.75877 -10.27171 -10.02766 -9.78637 -9.63682 -9.36102 -9.20352 -8.81396 -8.42654 -8.22890 -6.04547 -4.11592 -0.41423 0.28853 1.22622 1.24637 1.51886 2.64108 3.26002 3.34332 3.35386 3.37321 3.56750 3.90353 4.26383 4.38474 4.55590 4.73766 4.88584 5.14309 5.23187 5.26375 5.38478 5.51232 5.68544 5.81653 5.95179 6.06525 6.27435 6.49605 6.52384 6.57010 6.74653 6.94477 7.17210 7.26645 7.46300 7.68347 7.91416 7.97727 8.07220 8.35097 8.91672 9.53373 11.01383 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.004041 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.633663 B = 6927.274210 C = 7917.218433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.058 3.942 10 H 0.044 0.956 11 C -0.112 4.112 12 C -0.116 4.116 13 C 0.071 3.929 14 N -0.495 5.495 15 C 0.181 3.819 16 C -0.119 4.119 17 C -0.020 4.020 18 Cl -0.027 7.027 19 C 0.098 3.902 20 F -0.114 7.114 21 C -0.078 4.078 22 C -0.004 4.004 23 N 0.024 4.976 24 O -0.201 6.201 25 O -0.064 6.064 26 C 0.071 3.929 27 H 0.261 0.739 28 H 0.031 0.969 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.031 0.969 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 -16.125 -3.373 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.039 3.961 10 H 0.062 0.938 11 C -0.150 4.150 12 C -0.154 4.154 13 C -0.055 4.055 14 N -0.218 5.218 15 C 0.083 3.917 16 C -0.141 4.141 17 C -0.049 4.049 18 Cl 0.003 6.997 19 C 0.077 3.923 20 F -0.092 7.092 21 C -0.099 4.099 22 C -0.089 4.089 23 N 0.549 4.451 24 O -0.402 6.402 25 O -0.301 6.301 26 C -0.053 4.053 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.183 0.817 35 H 0.191 0.809 36 H 0.049 0.951 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.613 -16.268 -3.484 17.903 hybrid contribution 1.175 0.690 -0.527 1.462 sum 7.789 -15.578 -4.011 17.872 Atomic orbital electron populations 1.69891 1.05791 1.26409 1.50113 1.24902 0.94826 0.98928 0.94925 0.86572 0.80050 0.83924 0.77637 1.19929 1.21053 1.20943 1.21089 0.92774 0.90429 1.51438 0.92826 1.18690 0.92400 0.89426 0.95601 0.93751 1.21695 1.00192 0.94861 0.98260 1.21693 0.96914 0.95593 1.01208 1.22169 0.95416 1.00152 0.87731 1.60129 1.21141 1.00290 1.40195 1.18868 0.91183 0.91834 0.89771 1.21805 0.94012 0.97062 1.01201 1.21263 0.94328 0.96724 0.92576 1.98432 1.49541 1.96140 1.55615 1.16797 0.92101 0.87733 0.95629 1.91599 1.68338 1.53765 1.95513 1.20745 0.92170 0.97298 0.99644 1.20949 0.94741 0.99652 0.93556 1.43177 1.01149 1.00137 1.00648 1.94518 1.80407 1.45651 1.19612 1.94725 1.31698 1.22315 1.81381 1.22580 0.96801 0.86535 0.99398 0.92946 0.95028 0.88599 0.92824 0.90936 0.91975 0.94768 0.81747 0.80896 0.95088 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 11.35 55.43 0.63 -23.50 16 2 C 0.07 1.75 5.30 -17.81 -0.09 1.65 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.38 8.56 -34.44 -0.29 -13.67 16 8 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 9 C 0.06 1.33 2.26 -91.69 -0.21 1.12 16 10 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 11 C -0.11 -2.41 5.02 -26.60 -0.13 -2.54 16 12 C -0.12 -2.03 6.09 -26.65 -0.16 -2.19 16 13 C 0.07 1.08 5.17 -3.83 -0.02 1.06 16 14 N -0.50 -8.22 2.51 -171.13 -0.43 -8.65 16 15 C 0.18 2.55 4.67 -83.75 -0.39 2.16 16 16 C -0.12 -1.40 8.48 -39.35 -0.33 -1.74 16 17 C -0.02 -0.22 6.32 -39.46 -0.25 -0.47 16 18 Cl -0.03 -0.26 28.61 -51.86 -1.48 -1.75 16 19 C 0.10 1.05 7.27 -39.38 -0.29 0.76 16 20 F -0.11 -1.18 16.83 2.25 0.04 -1.15 16 21 C -0.08 -0.87 9.53 -39.55 -0.38 -1.25 16 22 C 0.00 -0.06 6.86 -79.75 -0.55 -0.61 16 23 N 0.02 0.40 4.45 34.06 0.15 0.55 16 24 O -0.20 -3.29 18.46 -29.46 -0.54 -3.83 16 25 O -0.06 -1.20 17.11 -29.46 -0.50 -1.70 16 26 C 0.07 1.35 4.34 -3.84 -0.02 1.33 16 27 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.10 2.36 6.15 -51.93 -0.32 2.04 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.03 0.48 7.57 -51.93 -0.39 0.09 16 34 H 0.17 1.80 7.13 -52.49 -0.37 1.43 16 35 H 0.17 1.62 7.62 -52.49 -0.40 1.22 16 36 H 0.03 0.56 7.32 -51.93 -0.38 0.18 16 37 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -26.87 330.70 -9.24 -36.10 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -3.94 Total: -2.17 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -3.11 Total: -14.38 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.35 Total: -31.60 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -1.05 Total: -5.53 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.48 Total: -1.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.87 -9.24 -36.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.335 kcal (2) G-P(sol) polarization free energy of solvation -26.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds