Wall clock time and date at job start Tue Mar 31 2020 15:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86794 * 119.99888 * 2 1 4 4 H 1.48501 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47285 * 300.00238 * 3 2 1 6 6 H 1.48504 * 109.47279 * 60.00174 * 3 2 1 7 7 C 1.37878 * 119.99537 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99360 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00452 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50501 * 299.92343 * 9 7 2 11 11 C 1.53127 * 109.50380 * 59.99864 * 9 7 2 12 12 C 1.53118 * 109.16080 * 177.59731 * 11 9 7 13 13 C 1.53036 * 109.27675 * 302.34576 * 12 11 9 14 14 N 1.46850 * 109.52507 * 59.17776 * 13 12 11 15 15 C 1.39823 * 110.99872 * 174.15733 * 14 13 12 16 16 C 1.38887 * 120.03887 * 64.43449 * 15 14 13 17 17 C 1.38205 * 119.93602 * 179.97438 * 16 15 14 18 18 Cl 1.73589 * 119.98678 * 179.97438 * 17 16 15 19 19 C 1.38600 * 120.02338 * 0.02562 * 17 16 15 20 20 F 1.35099 * 119.95383 * 179.97438 * 19 17 16 21 21 C 1.38410 * 120.09056 * 359.97438 * 19 17 16 22 22 C 1.38164 * 120.05878 * 359.70750 * 21 19 17 23 23 N 1.48015 * 120.01206 * 180.27712 * 22 21 19 24 24 O 1.21800 * 119.99984 * 5.36768 * 23 22 21 25 25 O 1.21800 * 120.00038 * 185.36953 * 23 22 21 26 26 C 1.46842 * 111.19993 * 298.25778 * 14 13 12 27 27 H 0.96997 * 119.99716 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.52069 * 57.69066 * 11 9 7 29 29 H 1.08999 * 109.52106 * 297.50004 * 11 9 7 30 30 H 1.08995 * 109.50193 * 182.40171 * 12 11 9 31 31 H 1.09000 * 109.50049 * 62.28341 * 12 11 9 32 32 H 1.08997 * 109.45976 * 179.19837 * 13 12 11 33 33 H 1.09001 * 109.45986 * 299.16366 * 13 12 11 34 34 H 1.07994 * 120.03424 * 359.97438 * 16 15 14 35 35 H 1.07997 * 119.96743 * 179.97438 * 21 19 17 36 36 H 1.08997 * 109.46651 * 301.72832 * 26 14 13 37 37 H 1.08994 * 109.45307 * 181.74642 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6249 -2.5587 0.8885 11 6 0.3709 -2.5802 -1.2521 12 6 -0.3448 -3.9336 -1.2760 13 6 0.6953 -5.0558 -1.2445 14 7 1.5112 -4.9347 -0.0295 15 6 2.3843 -6.0193 0.0978 16 6 3.3884 -6.2175 -0.8410 17 6 4.2506 -7.2900 -0.7128 18 17 5.5057 -7.5393 -1.8859 19 6 4.1129 -8.1671 0.3515 20 9 4.9562 -9.2153 0.4751 21 6 3.1127 -7.9706 1.2877 22 6 2.2529 -6.8959 1.1666 23 7 1.1874 -6.6833 2.1718 24 8 1.1287 -7.3967 3.1573 25 8 0.3693 -5.7949 2.0135 26 6 2.2449 -3.6629 -0.0071 27 1 -0.4849 0.8400 -0.0004 28 1 0.9924 -2.4810 -2.1421 29 1 -0.3670 -1.7783 -1.2307 30 1 -0.9400 -4.0145 -2.1856 31 1 -0.9959 -4.0163 -0.4058 32 1 0.1885 -6.0208 -1.2470 33 1 1.3374 -4.9806 -2.1221 34 1 3.4954 -5.5342 -1.6705 35 1 3.0069 -8.6555 2.1160 36 1 2.8797 -3.5942 -0.8905 37 1 2.8634 -3.6164 0.8892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853761832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:36 Heat of formation + Delta-G solvation = -25.363432 kcal Electronic energy + Delta-G solvation = -26167.025093 eV Core-core repulsion = 22080.938710 eV Total energy + Delta-G solvation = -4086.086383 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.37841 -43.22309 -41.39594 -39.26555 -37.96061 -37.47741 -35.65785 -33.72967 -33.13130 -31.77106 -30.47121 -27.57923 -26.96284 -25.64993 -24.05638 -23.33210 -22.93592 -20.60581 -20.44428 -19.70634 -18.86365 -18.50767 -18.15296 -17.97827 -17.64309 -17.16824 -16.59763 -15.98452 -15.86812 -15.66977 -15.14214 -14.83746 -14.60299 -14.29169 -14.19053 -14.04683 -13.64270 -13.36158 -13.00111 -12.87045 -12.65003 -12.57242 -12.53295 -12.41859 -12.19617 -12.08236 -11.87688 -11.78179 -11.40240 -11.00452 -10.73527 -10.68869 -10.37747 -10.18810 -9.53724 -8.05867 -6.19821 -1.50448 -0.64936 0.04338 0.24250 0.52443 1.41785 1.44706 1.54265 1.65029 2.32062 2.45631 2.52296 2.97975 3.22236 3.31664 3.45796 3.77326 3.93594 4.13165 4.14839 4.22263 4.24822 4.43551 4.51429 4.60481 4.79447 4.82813 4.90641 5.06218 5.11634 5.26806 5.38489 5.51873 5.66691 5.79733 6.05077 6.12073 6.20988 6.40654 6.58842 6.92566 7.48297 8.98871 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.004041 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.633663 B = 6927.274210 C = 7917.218433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.056 3.944 10 H -0.002 1.002 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.074 3.926 14 N -0.509 5.509 15 C 0.167 3.833 16 C -0.111 4.111 17 C -0.010 4.010 18 Cl -0.011 7.011 19 C 0.112 3.888 20 F -0.107 7.107 21 C -0.064 4.064 22 C -0.014 4.014 23 N 0.028 4.972 24 O -0.180 6.180 25 O -0.133 6.133 26 C 0.088 3.912 27 H 0.260 0.740 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.177 0.823 35 H 0.194 0.806 36 H 0.045 0.955 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.577 -18.122 -4.538 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.016 0.984 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.051 4.051 14 N -0.231 5.231 15 C 0.070 3.930 16 C -0.132 4.132 17 C -0.039 4.039 18 Cl 0.019 6.981 19 C 0.091 3.909 20 F -0.085 7.085 21 C -0.084 4.084 22 C -0.099 4.099 23 N 0.548 4.452 24 O -0.390 6.390 25 O -0.354 6.354 26 C -0.037 4.037 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.194 0.806 35 H 0.211 0.789 36 H 0.063 0.937 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.767 -18.184 -4.705 20.729 hybrid contribution 0.620 1.128 -0.123 1.293 sum 9.387 -17.056 -4.828 20.059 Atomic orbital electron populations 1.70045 1.07104 1.26956 1.51043 1.25650 0.95555 1.02098 0.94848 0.85627 0.79139 0.80123 0.77454 1.19140 1.20573 1.21133 1.21479 0.92975 0.91881 1.50890 0.92848 1.18557 0.92818 0.90572 0.94373 0.98415 1.21467 0.99216 0.96125 0.97327 1.21566 0.97295 0.94291 1.01489 1.22159 0.95032 0.99827 0.88047 1.59834 1.21914 1.00056 1.41299 1.18785 0.91932 0.91447 0.90824 1.21760 0.93254 0.97450 1.00733 1.21267 0.94054 0.96001 0.92599 1.98451 1.48689 1.95978 1.54988 1.16707 0.91607 0.87520 0.95101 1.91630 1.68030 1.53436 1.95417 1.20883 0.91082 0.96340 1.00068 1.20988 0.94773 1.01105 0.93067 1.43512 1.01362 0.99482 1.00885 1.94469 1.79965 1.44656 1.19941 1.94756 1.33952 1.24129 1.82540 1.22147 0.95505 0.86634 0.99378 0.93102 0.94753 0.92258 0.90335 0.93062 0.89983 0.92640 0.80616 0.78861 0.93696 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.84 11.35 21.45 0.24 -51.59 16 2 C 0.02 0.96 5.30 84.65 0.45 1.40 16 3 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.53 -28.27 8.56 25.60 0.22 -28.05 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 9 C 0.06 2.68 2.26 -11.49 -0.03 2.66 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.10 -4.56 5.02 30.68 0.15 -4.41 16 12 C -0.11 -3.82 6.09 30.65 0.19 -3.63 16 13 C 0.07 2.17 5.17 86.33 0.45 2.61 16 14 N -0.51 -16.74 2.51 -695.35 -1.75 -18.49 16 15 C 0.17 4.44 4.67 38.17 0.18 4.62 16 16 C -0.11 -2.28 8.48 22.42 0.19 -2.09 16 17 C -0.01 -0.18 6.32 22.35 0.14 -0.04 16 18 Cl -0.01 -0.17 28.61 -2.72 -0.08 -0.25 16 19 C 0.11 1.98 7.27 22.40 0.16 2.14 16 20 F -0.11 -1.81 16.83 44.97 0.76 -1.05 16 21 C -0.06 -1.22 9.53 22.29 0.21 -1.01 16 22 C -0.01 -0.38 6.86 36.51 0.25 -0.13 16 23 N 0.03 0.92 4.45 -46.16 -0.21 0.72 16 24 O -0.18 -5.69 18.46 18.89 0.35 -5.34 16 25 O -0.13 -5.14 17.11 18.89 0.32 -4.82 16 26 C 0.09 3.39 4.34 86.33 0.37 3.76 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 3.06 6.15 -2.39 -0.01 3.04 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 33 H 0.06 1.40 7.57 -2.39 -0.02 1.38 16 34 H 0.18 3.25 7.13 -2.91 -0.02 3.23 16 35 H 0.19 2.93 7.62 -2.91 -0.02 2.90 16 36 H 0.04 1.57 7.32 -2.39 -0.02 1.56 16 37 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 Total: -1.00 -60.72 330.70 5.73 -55.00 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.12 Total: 3.30 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 2.94 Total: -22.17 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.71 Total: -69.37 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.67 Total: -10.16 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.76 Total: -1.05 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -60.72 5.73 -55.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.632 kcal (2) G-P(sol) polarization free energy of solvation -60.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds