Wall clock time and date at job start Tue Mar 31 2020 15:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47332 * 239.99826 * 3 2 1 5 5 H 1.48504 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47181 * 119.99882 * 3 2 1 7 7 C 1.37871 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00231 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.50570 * 60.07960 * 9 7 2 11 11 C 1.53127 * 109.50246 * 300.00305 * 9 7 2 12 12 C 1.53117 * 109.15989 * 182.40233 * 11 9 7 13 13 C 1.53044 * 109.27792 * 57.65607 * 12 11 9 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 11 15 15 C 1.39813 * 111.00111 * 185.83173 * 14 13 12 16 16 C 1.38887 * 120.04641 * 295.77679 * 15 14 13 17 17 C 1.38201 * 119.93740 * 179.71917 * 16 15 14 18 18 Cl 1.73596 * 119.98708 * 180.29771 * 17 16 15 19 19 C 1.38604 * 120.02733 * 0.55182 * 17 16 15 20 20 F 1.35096 * 119.95709 * 179.74356 * 19 17 16 21 21 C 1.38414 * 120.08664 * 359.72529 * 19 17 16 22 22 C 1.38163 * 120.05893 * 359.97438 * 21 19 17 23 23 N 1.48009 * 120.00931 * 179.97438 * 22 21 19 24 24 O 1.21798 * 120.00281 * 0.02562 * 23 22 21 25 25 O 1.21802 * 120.00098 * 180.02562 * 23 22 21 26 26 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 27 27 H 0.97003 * 120.00052 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.52581 * 62.49867 * 11 9 7 29 29 H 1.08998 * 109.57452 * 302.33649 * 11 9 7 30 30 H 1.09001 * 109.50874 * 297.71787 * 12 11 9 31 31 H 1.09000 * 109.50461 * 177.59307 * 12 11 9 32 32 H 1.09002 * 109.46396 * 60.83566 * 13 12 11 33 33 H 1.08994 * 109.46485 * 180.81491 * 13 12 11 34 34 H 1.07996 * 120.02837 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.96739 * 180.02562 * 21 19 17 36 36 H 1.08995 * 109.46742 * 178.23410 * 26 14 13 37 37 H 1.09004 * 109.46459 * 58.26240 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5578 -0.8908 11 6 0.3709 -2.5812 1.2498 12 6 -0.3448 -3.9346 1.2725 13 6 0.6953 -5.0568 1.2400 14 7 1.5111 -4.9345 0.0251 15 6 2.3845 -6.0187 -0.1033 16 6 3.3860 -6.2201 0.8377 17 6 4.2445 -7.2958 0.7118 18 17 5.4918 -7.5532 1.8913 19 6 4.1132 -8.1663 -0.3588 20 9 4.9564 -9.2145 -0.4833 21 6 3.1191 -7.9633 -1.3003 22 6 2.2550 -6.8926 -1.1746 23 7 1.1928 -6.6763 -2.1823 24 8 1.0799 -7.4425 -3.1223 25 8 0.4314 -5.7320 -2.0715 26 6 2.2449 -3.6629 0.0038 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3670 -1.7793 1.2291 29 1 0.9915 -2.4824 2.1404 30 1 -0.9959 -4.0168 0.4022 31 1 -0.9399 -4.0164 2.1820 32 1 1.3374 -4.9825 2.1177 33 1 0.1886 -6.0219 1.2415 34 1 3.4912 -5.5390 1.6692 35 1 3.0183 -8.6431 -2.1335 36 1 2.8636 -3.6155 -0.8923 37 1 2.8797 -3.5950 0.8873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853761833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:39 Heat of formation + Delta-G solvation = -13.451309 kcal Electronic energy + Delta-G solvation = -26168.166524 eV Core-core repulsion = 22082.596689 eV Total energy + Delta-G solvation = -4085.569835 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.51780 -42.02031 -40.23702 -38.04045 -37.04138 -36.19500 -34.01505 -32.13108 -32.12035 -30.11912 -29.28170 -26.40813 -25.09840 -24.46136 -22.87559 -21.94885 -21.53477 -19.49893 -18.92507 -18.47631 -17.56022 -17.29298 -17.00539 -16.95568 -16.28945 -16.01987 -15.01367 -14.72753 -14.71295 -14.39023 -13.94177 -13.61253 -13.39145 -12.85569 -12.71937 -12.67563 -12.47076 -12.03963 -11.84955 -11.57862 -11.25589 -11.00583 -10.93177 -10.87457 -10.79132 -10.75992 -10.28570 -10.02180 -9.78640 -9.63043 -9.36103 -9.19821 -8.82370 -8.41791 -8.22285 -6.03649 -4.10893 -0.41612 0.28922 1.23148 1.24512 1.52070 2.64324 3.28497 3.34214 3.34444 3.36521 3.56835 3.90367 4.26427 4.38933 4.55679 4.73850 4.88714 5.14324 5.23208 5.26914 5.37857 5.51013 5.68626 5.81286 5.95226 6.06933 6.27441 6.49784 6.52572 6.56946 6.74710 6.94761 7.17393 7.26728 7.46544 7.68446 7.91696 7.98538 8.07778 8.35706 8.91920 9.53926 11.02189 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.004039 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.017506 B = 6930.493500 C = 7919.159910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.058 3.942 10 H 0.045 0.955 11 C -0.112 4.112 12 C -0.116 4.116 13 C 0.069 3.931 14 N -0.495 5.495 15 C 0.181 3.819 16 C -0.119 4.119 17 C -0.020 4.020 18 Cl -0.027 7.027 19 C 0.098 3.902 20 F -0.114 7.114 21 C -0.078 4.078 22 C -0.005 4.005 23 N 0.024 4.976 24 O -0.202 6.202 25 O -0.063 6.063 26 C 0.072 3.928 27 H 0.262 0.738 28 H 0.096 0.904 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.063 0.937 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 -16.056 3.313 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.071 0.929 9 C 0.040 3.960 10 H 0.063 0.937 11 C -0.150 4.150 12 C -0.154 4.154 13 C -0.056 4.056 14 N -0.217 5.217 15 C 0.084 3.916 16 C -0.141 4.141 17 C -0.049 4.049 18 Cl 0.003 6.997 19 C 0.077 3.923 20 F -0.092 7.092 21 C -0.098 4.098 22 C -0.089 4.089 23 N 0.548 4.452 24 O -0.402 6.402 25 O -0.300 6.300 26 C -0.052 4.052 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.183 0.817 35 H 0.191 0.809 36 H 0.081 0.919 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.612 -16.207 3.434 17.838 hybrid contribution 1.195 0.674 0.536 1.473 sum 7.807 -15.533 3.969 17.832 Atomic orbital electron populations 1.69866 1.05791 1.26631 1.49928 1.24891 0.94822 0.98890 0.94908 0.86689 0.79636 0.83290 0.78538 1.20293 1.21226 1.20417 1.21011 0.92701 0.90457 1.51697 0.92934 1.18680 0.92393 0.89385 0.95586 0.93700 1.21695 1.00206 0.94819 0.98286 1.21695 0.96899 0.95626 1.01179 1.22183 0.95458 1.00108 0.87831 1.60135 1.21173 1.00324 1.40088 1.18873 0.91128 0.91777 0.89864 1.21805 0.94069 0.96979 1.01243 1.21265 0.94438 0.96714 0.92465 1.98433 1.50124 1.96011 1.55168 1.16799 0.92211 0.87808 0.95454 1.91598 1.68342 1.53750 1.95523 1.20749 0.92171 0.97204 0.99724 1.20954 0.94795 0.99669 0.93504 1.43184 1.01061 1.00348 1.00558 1.94515 1.78241 1.43693 1.23784 1.94735 1.36063 1.19237 1.79987 1.22570 0.96786 0.86475 0.99391 0.92832 0.88602 0.95033 0.90976 0.92835 0.94742 0.92042 0.81749 0.80883 0.91875 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 11.35 55.43 0.63 -23.50 16 2 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.41 8.56 -34.44 -0.29 -13.70 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.93 16 9 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 10 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.11 -2.41 5.02 -26.61 -0.13 -2.54 16 12 C -0.12 -2.03 6.09 -26.65 -0.16 -2.19 16 13 C 0.07 1.06 5.17 -3.83 -0.02 1.04 16 14 N -0.50 -8.21 2.50 -171.14 -0.43 -8.64 16 15 C 0.18 2.55 4.67 -83.75 -0.39 2.16 16 16 C -0.12 -1.41 8.48 -39.35 -0.33 -1.74 16 17 C -0.02 -0.21 6.32 -39.46 -0.25 -0.46 16 18 Cl -0.03 -0.26 28.61 -51.86 -1.48 -1.75 16 19 C 0.10 1.05 7.27 -39.38 -0.29 0.76 16 20 F -0.11 -1.19 16.83 2.25 0.04 -1.15 16 21 C -0.08 -0.87 9.53 -39.54 -0.38 -1.25 16 22 C 0.00 -0.06 6.87 -79.75 -0.55 -0.61 16 23 N 0.02 0.39 4.45 34.06 0.15 0.54 16 24 O -0.20 -3.29 18.45 -29.46 -0.54 -3.83 16 25 O -0.06 -1.18 17.09 -29.46 -0.50 -1.68 16 26 C 0.07 1.37 4.34 -3.84 -0.02 1.35 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.10 2.36 6.15 -51.93 -0.32 2.04 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.49 7.55 -51.93 -0.39 0.09 16 33 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.17 1.80 7.13 -52.49 -0.37 1.43 16 35 H 0.17 1.63 7.61 -52.49 -0.40 1.23 16 36 H 0.06 1.24 8.11 -51.93 -0.42 0.81 16 37 H 0.03 0.55 7.33 -51.93 -0.38 0.17 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -26.78 330.65 -9.23 -36.02 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.94 Total: -2.10 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -3.11 Total: -14.37 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.35 Total: -31.59 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -1.05 Total: -5.52 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.48 Total: -1.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.78 -9.23 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.564 kcal (2) G-P(sol) polarization free energy of solvation -26.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds