Wall clock time and date at job start Tue Mar 31 2020 15:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47332 * 239.99826 * 3 2 1 5 5 H 1.48504 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47181 * 119.99882 * 3 2 1 7 7 C 1.37871 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00231 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.50570 * 60.07960 * 9 7 2 11 11 C 1.53127 * 109.50246 * 300.00305 * 9 7 2 12 12 C 1.53117 * 109.15989 * 182.40233 * 11 9 7 13 13 C 1.53044 * 109.27792 * 57.65607 * 12 11 9 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 11 15 15 C 1.39813 * 111.00111 * 185.83173 * 14 13 12 16 16 C 1.38887 * 120.04641 * 295.77679 * 15 14 13 17 17 C 1.38201 * 119.93740 * 179.71917 * 16 15 14 18 18 Cl 1.73596 * 119.98708 * 180.29771 * 17 16 15 19 19 C 1.38604 * 120.02733 * 0.55182 * 17 16 15 20 20 F 1.35096 * 119.95709 * 179.74356 * 19 17 16 21 21 C 1.38414 * 120.08664 * 359.72529 * 19 17 16 22 22 C 1.38163 * 120.05893 * 359.97438 * 21 19 17 23 23 N 1.48009 * 120.00931 * 179.97438 * 22 21 19 24 24 O 1.21798 * 120.00281 * 0.02562 * 23 22 21 25 25 O 1.21802 * 120.00098 * 180.02562 * 23 22 21 26 26 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 27 27 H 0.97003 * 120.00052 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.52581 * 62.49867 * 11 9 7 29 29 H 1.08998 * 109.57452 * 302.33649 * 11 9 7 30 30 H 1.09001 * 109.50874 * 297.71787 * 12 11 9 31 31 H 1.09000 * 109.50461 * 177.59307 * 12 11 9 32 32 H 1.09002 * 109.46396 * 60.83566 * 13 12 11 33 33 H 1.08994 * 109.46485 * 180.81491 * 13 12 11 34 34 H 1.07996 * 120.02837 * 359.97438 * 16 15 14 35 35 H 1.07999 * 119.96739 * 180.02562 * 21 19 17 36 36 H 1.08995 * 109.46742 * 178.23410 * 26 14 13 37 37 H 1.09004 * 109.46459 * 58.26240 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5578 -0.8908 11 6 0.3709 -2.5812 1.2498 12 6 -0.3448 -3.9346 1.2725 13 6 0.6953 -5.0568 1.2400 14 7 1.5111 -4.9345 0.0251 15 6 2.3845 -6.0187 -0.1033 16 6 3.3860 -6.2201 0.8377 17 6 4.2445 -7.2958 0.7118 18 17 5.4918 -7.5532 1.8913 19 6 4.1132 -8.1663 -0.3588 20 9 4.9564 -9.2145 -0.4833 21 6 3.1191 -7.9633 -1.3003 22 6 2.2550 -6.8926 -1.1746 23 7 1.1928 -6.6763 -2.1823 24 8 1.0799 -7.4425 -3.1223 25 8 0.4314 -5.7320 -2.0715 26 6 2.2449 -3.6629 0.0038 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3670 -1.7793 1.2291 29 1 0.9915 -2.4824 2.1404 30 1 -0.9959 -4.0168 0.4022 31 1 -0.9399 -4.0164 2.1820 32 1 1.3374 -4.9825 2.1177 33 1 0.1886 -6.0219 1.2415 34 1 3.4912 -5.5390 1.6692 35 1 3.0183 -8.6431 -2.1335 36 1 2.8636 -3.6155 -0.8923 37 1 2.8797 -3.5950 0.8873 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853761833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:38 Heat of formation + Delta-G solvation = -24.971537 kcal Electronic energy + Delta-G solvation = -26168.666078 eV Core-core repulsion = 22082.596689 eV Total energy + Delta-G solvation = -4086.069389 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.37874 -43.22214 -41.39597 -39.26434 -37.96006 -37.47442 -35.65412 -33.72778 -33.13075 -31.76875 -30.47015 -27.57764 -26.95653 -25.64865 -24.05558 -23.32856 -22.93515 -20.60456 -20.44291 -19.70103 -18.85866 -18.49696 -18.14870 -17.98681 -17.63684 -17.16787 -16.59786 -15.98493 -15.86682 -15.67044 -15.14063 -14.83416 -14.60020 -14.28702 -14.18673 -14.04418 -13.63961 -13.36036 -13.00502 -12.82578 -12.64017 -12.57392 -12.56979 -12.41852 -12.19286 -12.08046 -11.89667 -11.77378 -11.39372 -11.00429 -10.73667 -10.69189 -10.36533 -10.18760 -9.53249 -8.04894 -6.19039 -1.50792 -0.64899 0.04658 0.24295 0.52448 1.44284 1.45365 1.52392 1.65156 2.32302 2.45874 2.52570 2.97931 3.23015 3.31661 3.45815 3.77323 3.93532 4.12966 4.14231 4.22487 4.24875 4.43522 4.51516 4.60150 4.79475 4.82705 4.91001 5.05754 5.11892 5.26877 5.38339 5.52027 5.66751 5.79667 6.05586 6.12530 6.21373 6.41202 6.58956 6.92972 7.48954 8.99425 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.004039 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.017506 B = 6930.493500 C = 7919.159910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.056 3.944 10 H -0.002 1.002 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.073 3.927 14 N -0.509 5.509 15 C 0.167 3.833 16 C -0.111 4.111 17 C -0.010 4.010 18 Cl -0.011 7.011 19 C 0.112 3.888 20 F -0.107 7.107 21 C -0.064 4.064 22 C -0.015 4.015 23 N 0.028 4.972 24 O -0.179 6.179 25 O -0.134 6.134 26 C 0.089 3.911 27 H 0.260 0.740 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.177 0.823 35 H 0.194 0.806 36 H 0.050 0.950 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.599 -18.096 4.493 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.016 0.984 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.052 4.052 14 N -0.231 5.231 15 C 0.070 3.930 16 C -0.132 4.132 17 C -0.039 4.039 18 Cl 0.019 6.981 19 C 0.091 3.909 20 F -0.085 7.085 21 C -0.084 4.084 22 C -0.100 4.100 23 N 0.547 4.453 24 O -0.389 6.389 25 O -0.355 6.355 26 C -0.036 4.036 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.194 0.806 35 H 0.212 0.788 36 H 0.069 0.931 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.774 -18.155 4.669 20.697 hybrid contribution 0.636 1.112 0.128 1.287 sum 9.410 -17.043 4.797 20.051 Atomic orbital electron populations 1.70027 1.07108 1.27086 1.50894 1.25642 0.95549 1.02075 0.94825 0.85744 0.78442 0.79501 0.78721 1.20092 1.21217 1.19415 1.21423 0.92979 0.91900 1.51126 0.92831 1.18546 0.92814 0.90547 0.94348 0.98373 1.21465 0.99229 0.96082 0.97351 1.21567 0.97282 0.94333 1.01455 1.22172 0.95075 0.99777 0.88155 1.59836 1.21959 1.00099 1.41179 1.18790 0.91870 0.91383 0.90925 1.21760 0.93308 0.97369 1.00777 1.21268 0.94148 0.95986 0.92501 1.98451 1.49277 1.95846 1.54534 1.16708 0.91713 0.87591 0.94932 1.91629 1.68034 1.53420 1.95428 1.20889 0.91075 0.96228 1.00175 1.20991 0.94852 1.01125 0.92992 1.43519 1.01251 0.99717 1.00768 1.94465 1.77708 1.42775 1.23975 1.94769 1.38475 1.20846 1.81388 1.22134 0.95486 0.86566 0.99370 0.93096 0.92254 0.94776 0.93106 0.90350 0.92620 0.90056 0.80618 0.78845 0.93120 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.85 11.35 21.45 0.24 -51.61 16 2 C 0.02 0.99 5.30 84.65 0.45 1.44 16 3 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -28.38 8.56 25.60 0.22 -28.16 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 9 C 0.06 2.72 2.26 -11.49 -0.03 2.69 16 10 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 11 C -0.10 -4.57 5.02 30.68 0.15 -4.41 16 12 C -0.11 -3.82 6.09 30.65 0.19 -3.64 16 13 C 0.07 2.14 5.17 86.33 0.45 2.58 16 14 N -0.51 -16.75 2.50 -695.36 -1.74 -18.49 16 15 C 0.17 4.45 4.67 38.17 0.18 4.63 16 16 C -0.11 -2.29 8.48 22.42 0.19 -2.10 16 17 C -0.01 -0.18 6.32 22.35 0.14 -0.04 16 18 Cl -0.01 -0.17 28.61 -2.72 -0.08 -0.25 16 19 C 0.11 1.97 7.27 22.40 0.16 2.14 16 20 F -0.11 -1.81 16.83 44.97 0.76 -1.05 16 21 C -0.06 -1.22 9.53 22.29 0.21 -1.01 16 22 C -0.01 -0.38 6.87 36.51 0.25 -0.13 16 23 N 0.03 0.92 4.45 -46.16 -0.21 0.72 16 24 O -0.18 -5.62 18.45 18.89 0.35 -5.27 16 25 O -0.13 -5.23 17.09 18.88 0.32 -4.91 16 26 C 0.09 3.43 4.34 86.33 0.37 3.80 16 27 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.06 3.06 6.15 -2.39 -0.01 3.05 16 29 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 1.41 7.55 -2.39 -0.02 1.39 16 33 H 0.08 2.09 8.11 -2.39 -0.02 2.07 16 34 H 0.18 3.25 7.13 -2.91 -0.02 3.23 16 35 H 0.19 2.93 7.61 -2.91 -0.02 2.91 16 36 H 0.05 2.03 8.11 -2.39 -0.02 2.01 16 37 H 0.04 1.56 7.33 -2.38 -0.02 1.54 16 Total: -1.00 -60.63 330.65 5.74 -54.89 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 1.12 Total: 3.53 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 2.94 Total: -22.20 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -1.70 Total: -69.38 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.67 Total: -10.19 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.76 Total: -1.05 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -60.63 5.74 -54.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853761833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.919 kcal (2) G-P(sol) polarization free energy of solvation -60.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds