Wall clock time and date at job start Tue Mar 31 2020 15:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00276 * 2 1 4 4 C 1.53776 * 113.61424 * 149.99761 * 3 2 1 5 5 C 1.53784 * 87.07996 * 89.19714 * 4 3 2 6 6 S 1.81411 * 113.61272 * 139.97901 * 5 4 3 7 7 C 1.81401 * 102.99822 * 176.52981 * 6 5 4 8 8 C 1.50699 * 109.46650 * 180.02562 * 7 6 5 9 9 C 1.38116 * 120.02363 * 270.01412 * 8 7 6 10 10 C 1.38389 * 120.05384 * 180.02562 * 9 8 7 11 11 Cl 1.73598 * 119.94400 * 179.97438 * 10 9 8 12 12 C 1.38428 * 120.11257 * 0.02562 * 10 9 8 13 13 C 1.38080 * 120.05538 * 359.67905 * 12 10 9 14 14 C 1.38857 * 120.02935 * 90.00318 * 8 7 6 15 15 O 1.35760 * 120.05471 * 0.02562 * 14 8 7 16 16 C 1.34825 * 116.99718 * 185.87866 * 15 14 8 17 17 H 1.08006 * 120.00044 * 354.93235 * 16 15 14 18 18 C 1.38649 * 120.00294 * 174.93494 * 16 15 14 19 19 N 1.31561 * 119.99650 * 0.27419 * 18 16 15 20 20 Si 1.86801 * 120.00199 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46979 * 90.00342 * 20 18 16 22 22 H 1.48505 * 109.46883 * 210.00034 * 20 18 16 23 23 H 1.48495 * 109.46969 * 329.99962 * 20 18 16 24 24 C 1.53779 * 87.17275 * 25.38939 * 5 4 3 25 25 H 1.09005 * 109.47218 * 300.00531 * 1 2 3 26 26 H 1.09002 * 109.46606 * 59.99983 * 1 2 3 27 27 H 1.08996 * 109.47286 * 180.02562 * 1 2 3 28 28 H 1.08997 * 112.84956 * 18.79950 * 3 2 1 29 29 H 1.09000 * 113.61643 * 334.65084 * 4 3 2 30 30 H 1.08999 * 113.61144 * 203.74482 * 4 3 2 31 31 H 1.08992 * 113.61396 * 270.79395 * 5 4 3 32 32 H 1.08991 * 109.47087 * 59.99716 * 7 6 5 33 33 H 1.09007 * 109.46831 * 299.99963 * 7 6 5 34 34 H 1.07999 * 119.97244 * 359.97438 * 9 8 7 35 35 H 1.07996 * 119.97622 * 179.97438 * 12 10 9 36 36 H 1.07997 * 120.02654 * 180.31779 * 13 12 10 37 37 H 0.97001 * 120.00314 * 359.72295 * 19 18 16 38 38 H 1.09004 * 113.61666 * 89.15753 * 24 5 4 39 39 H 1.08998 * 113.61114 * 220.05637 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3756 1.3718 0.7045 5 6 4.0063 1.0350 -0.6570 6 16 5.5291 1.9591 -1.0008 7 6 6.0714 1.2746 -2.5908 8 6 7.3479 1.9512 -3.0197 9 6 7.2979 3.0954 -3.7917 10 6 8.4697 3.7169 -4.1863 11 17 8.4037 5.1545 -5.1571 12 6 9.6945 3.1936 -3.8090 13 6 9.7497 2.0534 -3.0322 14 6 8.5752 1.4250 -2.6388 15 8 8.6268 0.3003 -1.8803 16 6 9.8419 -0.0884 -1.4439 17 1 10.7264 0.4398 -1.7680 18 6 9.9559 -1.1662 -0.5792 19 7 8.8788 -1.8130 -0.1888 20 14 11.6394 -1.7051 0.0247 21 1 11.9700 -0.9823 1.2791 22 1 11.6274 -3.1672 0.2844 23 1 12.6590 -1.3944 -1.0092 24 6 2.7536 1.6494 -1.3036 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.3139 2.0789 0.3237 29 1 3.5176 0.5948 1.4557 30 1 3.6305 2.3667 1.0697 31 1 4.1107 -0.0348 -0.8371 32 1 5.2998 1.4444 -3.3416 33 1 6.2460 0.2039 -2.4849 34 1 6.3436 3.5049 -4.0883 35 1 10.6076 3.6802 -4.1185 36 1 10.7054 1.6485 -2.7338 37 1 8.0046 -1.5333 -0.5026 38 1 2.8382 2.7203 -1.4884 39 1 2.3943 1.0962 -2.1713 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863395312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:08 Heat of formation + Delta-G solvation = -41.698623 kcal Electronic energy + Delta-G solvation = -22654.920482 eV Core-core repulsion = 19102.046177 eV Total energy + Delta-G solvation = -3552.874305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.46948 -39.40457 -36.98775 -35.86437 -35.67931 -32.54259 -32.12152 -29.03213 -27.15761 -26.60749 -25.74878 -25.10465 -24.87270 -21.84960 -21.07769 -19.75409 -18.55434 -17.31568 -16.89770 -16.03927 -15.64232 -15.36114 -15.29198 -15.20630 -14.76910 -14.21341 -14.05090 -13.77144 -13.65991 -13.49861 -12.87233 -12.68641 -12.52996 -12.49487 -12.39670 -11.96294 -11.58516 -11.36639 -11.26993 -11.02711 -10.87479 -10.69773 -10.55384 -10.37853 -10.36423 -10.24586 -9.71418 -9.61241 -9.44120 -8.84063 -8.32844 -7.35418 -7.17443 -6.88801 -4.16903 1.53067 1.98161 2.40025 2.74074 3.02380 3.19470 3.24828 3.38220 3.47248 4.01496 4.31121 4.43339 4.51554 4.67105 4.86426 4.92563 5.06409 5.10519 5.14907 5.18545 5.26570 5.36496 5.42194 5.52731 5.63671 5.70328 5.71120 5.91444 5.94872 5.97877 6.05466 6.12468 6.29597 6.51357 6.78850 6.79368 7.02228 7.03354 7.35442 7.42247 8.26276 8.77076 9.42228 10.54582 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.007658 B = 0.004426 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3655.327415 B = 6324.657408 C = 9671.156928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.065 3.935 4 C -0.111 4.111 5 C -0.079 4.079 6 S -0.246 6.246 7 C -0.015 4.015 8 C -0.148 4.148 9 C -0.042 4.042 10 C -0.126 4.126 11 Cl -0.104 7.104 12 C -0.054 4.054 13 C -0.221 4.221 14 C 0.173 3.827 15 O -0.178 6.178 16 C -0.472 4.472 17 H 0.087 0.913 18 C 0.016 3.984 19 N -0.868 5.868 20 Si 1.097 2.903 21 H -0.279 1.279 22 H -0.275 1.275 23 H -0.281 1.281 24 C -0.146 4.146 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.285 0.715 38 H 0.100 0.900 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 6.909 -2.339 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.005 3.995 4 C -0.149 4.149 5 C -0.208 4.208 6 S -0.013 6.013 7 C -0.162 4.162 8 C -0.151 4.151 9 C -0.063 4.063 10 C -0.153 4.153 11 Cl -0.075 7.075 12 C -0.074 4.074 13 C -0.240 4.240 14 C 0.116 3.884 15 O -0.081 6.081 16 C -0.548 4.548 17 H 0.104 0.896 18 C -0.192 4.192 19 N -0.498 5.498 20 Si 0.921 3.079 21 H -0.205 1.205 22 H -0.200 1.200 23 H -0.207 1.207 24 C -0.186 4.186 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.947 6.281 -0.695 11.784 hybrid contribution -1.346 0.603 -1.912 2.415 sum -11.293 6.883 -2.608 13.480 Atomic orbital electron populations 1.22808 0.81014 1.02789 0.99917 1.87919 1.19616 1.26562 1.94558 1.23094 0.94226 0.85110 0.97039 1.23009 0.92822 1.03313 0.95793 1.24571 0.93868 1.02332 1.00007 1.86996 1.30109 1.53697 1.30508 1.21844 0.96857 1.02452 0.95093 1.18121 0.91232 0.98971 1.06800 1.20360 0.96700 0.93295 0.95973 1.20224 0.94882 0.93435 1.06778 1.98280 1.98884 1.39284 1.71077 1.20680 0.95751 0.95010 0.95910 1.21101 0.99071 0.98750 1.05125 1.18952 0.92454 0.86337 0.90680 1.83663 1.33586 1.33809 1.57002 1.22316 0.82547 1.18472 1.31426 0.89585 1.26568 1.06753 0.92330 0.93519 1.70535 0.99998 1.38819 1.40475 0.83076 0.71095 0.77239 0.76520 1.20523 1.19953 1.20699 1.23841 0.95207 1.01860 0.97706 0.93979 0.94022 0.89584 0.90431 0.89689 0.88213 0.87593 0.90348 0.89210 0.85818 0.86197 0.84387 0.90476 0.88190 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.37 -4.49 10.63 -35.23 -0.37 -4.86 16 3 C 0.07 0.72 4.38 -25.83 -0.11 0.61 16 4 C -0.11 -1.41 7.50 -25.92 -0.19 -1.61 16 5 C -0.08 -1.17 4.21 -25.92 -0.11 -1.28 16 6 S -0.25 -4.43 21.52 -107.50 -2.31 -6.74 16 7 C -0.02 -0.28 5.85 36.01 0.21 -0.07 16 8 C -0.15 -2.97 5.16 -104.44 -0.54 -3.51 16 9 C -0.04 -0.76 9.48 -39.57 -0.38 -1.13 16 10 C -0.13 -2.23 6.32 -39.46 -0.25 -2.48 16 11 Cl -0.10 -1.58 28.95 -51.86 -1.50 -3.09 16 12 C -0.05 -0.98 9.82 -39.57 -0.39 -1.37 16 13 C -0.22 -4.64 9.17 -39.40 -0.36 -5.00 16 14 C 0.17 3.96 6.62 -39.11 -0.26 3.70 16 15 O -0.18 -4.71 8.21 0.03 0.00 -4.71 16 16 C -0.47 -12.63 9.49 30.88 0.29 -12.33 16 17 H 0.09 2.16 5.20 -52.48 -0.27 1.89 16 18 C 0.02 0.42 5.49 -17.52 -0.10 0.32 16 19 N -0.87 -24.93 13.70 55.48 0.76 -24.17 16 20 Si 1.10 22.94 29.92 -169.99 -5.09 17.86 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.15 -1.72 7.51 -25.83 -0.19 -1.92 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 33 H 0.09 1.82 7.53 -51.92 -0.39 1.43 16 34 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.14 2.89 5.64 -52.49 -0.30 2.59 16 37 H 0.28 8.39 7.97 -40.82 -0.33 8.06 16 38 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -29.18 359.55 -9.51 -38.68 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.13 Total: 6.32 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -1.28 Total: -24.71 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.76 Total: -24.17 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.37 Total: -9.57 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.09 Total: 17.86 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -2.31 Total: -6.74 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -1.50 Total: -3.09 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.18 -9.51 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863395312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.014 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds