Wall clock time and date at job start Tue Mar 31 2020 14:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28388 * 124.90094 * 2 1 4 4 C 1.33458 * 117.76301 * 180.02562 * 3 2 1 5 5 C 1.33699 * 113.24571 * 0.02562 * 4 3 2 6 6 S 1.70767 * 124.90392 * 180.02562 * 2 1 3 7 7 C 1.51112 * 110.01408 * 179.97438 * 5 4 3 8 8 N 1.46574 * 107.34882 * 0.02562 * 7 5 4 9 9 S 1.65601 * 126.90091 * 180.02562 * 8 7 5 10 10 O 1.42102 * 104.27147 * 333.92432 * 9 8 7 11 11 O 1.42094 * 104.27613 * 206.06936 * 9 8 7 12 12 C 1.81397 * 104.45037 * 89.99585 * 9 8 7 13 13 C 1.52998 * 109.46914 * 186.06289 * 12 9 8 14 14 C 1.50699 * 115.54898 * 294.74013 * 13 12 9 15 15 H 1.08006 * 120.00240 * 99.44372 * 14 13 12 16 16 C 1.37880 * 120.00444 * 279.45012 * 14 13 12 17 17 N 1.31512 * 119.99579 * 5.45651 * 16 14 13 18 18 Si 1.86802 * 120.00217 * 185.46108 * 16 14 13 19 19 H 1.48496 * 109.46740 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.46903 * 299.99583 * 18 16 14 21 21 H 1.48496 * 109.46876 * 59.99727 * 18 16 14 22 22 C 1.52993 * 117.52123 * 80.44590 * 13 12 9 23 23 C 1.52996 * 60.00149 * 107.48012 * 22 13 12 24 24 C 1.46454 * 106.20358 * 0.25987 * 8 7 5 25 25 H 1.09004 * 109.47193 * 269.95720 * 1 2 3 26 26 H 1.08999 * 109.47066 * 29.95718 * 1 2 3 27 27 H 1.09001 * 109.47012 * 149.95583 * 1 2 3 28 28 H 1.09000 * 109.87244 * 240.55969 * 7 5 4 29 29 H 1.09005 * 109.98254 * 119.50273 * 7 5 4 30 30 H 1.08999 * 109.46937 * 66.05879 * 12 9 8 31 31 H 1.09000 * 109.47118 * 306.05659 * 12 9 8 32 32 H 0.97009 * 120.00185 * 174.99697 * 17 16 14 33 33 H 1.09006 * 117.49669 * 214.97192 * 22 13 12 34 34 H 1.08999 * 117.50358 * 359.97438 * 22 13 12 35 35 H 1.08999 * 117.49879 * 252.50793 * 23 22 13 36 36 H 1.09009 * 117.51920 * 107.48106 * 23 22 13 37 37 H 1.08996 * 109.82253 * 119.27681 * 24 8 7 38 38 H 1.09001 * 109.81650 * 240.20305 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2416 1.0530 0.0000 4 6 3.5659 0.8871 -0.0005 5 6 3.9368 -0.3974 -0.0015 6 16 2.4842 -1.4005 -0.0006 7 6 5.4444 -0.5003 -0.0027 8 7 5.9758 0.8657 -0.0017 9 16 7.5704 1.3123 -0.0030 10 8 8.2420 0.2149 0.6003 11 8 7.5749 2.5972 0.6037 12 6 8.0044 1.4364 -1.7599 13 6 9.5054 1.6987 -1.8971 14 6 9.9866 3.0199 -1.3548 15 1 10.4460 3.0678 -0.3785 16 6 9.8402 4.1675 -2.1048 17 7 9.1858 4.1289 -3.2449 18 14 10.5715 5.7772 -1.5016 19 1 10.2777 6.8526 -2.4826 20 1 9.9767 6.1293 -0.1874 21 1 12.0418 5.6289 -1.3558 22 6 10.4470 0.4992 -1.7733 23 6 10.2085 1.1467 -3.1388 24 6 4.8133 1.7564 0.0064 25 1 -0.3634 -0.0008 1.0277 26 1 -0.3633 0.8904 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 5.7791 -1.0277 -0.8960 29 1 5.7824 -1.0295 0.8883 30 1 7.4490 2.2569 -2.2142 31 1 7.7512 0.5034 -2.2634 32 1 9.0199 4.9483 -3.7370 33 1 11.4145 0.6656 -1.2995 34 1 9.9973 -0.4773 -1.5936 35 1 9.6017 0.5962 -3.8578 36 1 11.0188 1.7393 -3.5637 37 1 4.8292 2.3769 0.9024 38 1 4.8255 2.3880 -0.8819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867601920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:16 Heat of formation + Delta-G solvation = 21.968485 kcal Electronic energy + Delta-G solvation = -23692.477017 eV Core-core repulsion = 20176.699983 eV Total energy + Delta-G solvation = -3515.777035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.59279 -37.12601 -36.80592 -36.38892 -35.21350 -32.08600 -31.90033 -29.30850 -28.30601 -28.07551 -25.49519 -23.58456 -22.86788 -21.26216 -19.66115 -19.49895 -18.78698 -17.98476 -16.72414 -16.54018 -16.01573 -15.53338 -15.06786 -14.70914 -14.59926 -14.36541 -14.27277 -13.86100 -13.51070 -13.16597 -13.01447 -12.89565 -12.61313 -12.26633 -11.98257 -11.87373 -11.61689 -11.47411 -11.37841 -11.27263 -11.08083 -10.91446 -10.65331 -10.51492 -10.19109 -9.82721 -9.77151 -9.55208 -9.27266 -9.01721 -8.61783 -8.50260 -8.11807 -6.16604 -4.28455 0.48918 0.72627 0.97817 1.50772 2.50070 3.10405 3.32001 3.34323 3.41021 3.51183 4.27860 4.35876 4.42370 4.48432 4.83104 5.00114 5.07976 5.10828 5.11315 5.17782 5.31726 5.38756 5.51799 5.54331 5.60319 5.68778 5.82605 5.90742 6.06766 6.21665 6.31167 6.38029 6.56852 6.67180 6.94086 7.18773 7.33727 7.48404 7.77532 8.15728 8.77205 9.43782 10.91059 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.003577 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.979703 B = 7826.268006 C = 8383.128390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.052 3.948 3 N -0.457 5.457 4 C 0.052 3.948 5 C -0.260 4.260 6 S 0.160 5.840 7 C 0.210 3.790 8 N -1.019 6.019 9 S 2.623 3.377 10 O -0.960 6.960 11 O -0.934 6.934 12 C -0.548 4.548 13 C 0.043 3.957 14 C -0.519 4.519 15 H 0.069 0.931 16 C 0.083 3.917 17 N -0.875 5.875 18 Si 0.891 3.109 19 H -0.285 1.285 20 H -0.268 1.268 21 H -0.273 1.273 22 C -0.207 4.207 23 C -0.142 4.142 24 C 0.206 3.794 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 -11.164 3.165 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.227 4.227 3 N -0.172 5.172 4 C -0.079 4.079 5 C -0.381 4.381 6 S 0.415 5.585 7 C 0.081 3.919 8 N -0.854 5.854 9 S 2.723 3.277 10 O -0.951 6.951 11 O -0.924 6.924 12 C -0.682 4.682 13 C 0.041 3.959 14 C -0.556 4.556 15 H 0.087 0.913 16 C -0.122 4.122 17 N -0.510 5.510 18 Si 0.718 3.282 19 H -0.211 1.211 20 H -0.193 1.193 21 H -0.199 1.199 22 C -0.244 4.244 23 C -0.182 4.182 24 C 0.078 3.922 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.156 0.844 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.758 -11.444 3.793 19.841 hybrid contribution 0.566 1.538 -0.597 1.745 sum -15.192 -9.905 3.195 18.416 Atomic orbital electron populations 1.20460 0.84642 1.04398 1.04068 1.26919 1.01715 0.90321 1.03766 1.65312 1.03678 1.32182 1.15998 1.21321 0.90344 0.93741 1.02478 1.26845 1.01504 0.97536 1.12228 1.83597 0.94806 1.10451 1.69684 1.19367 0.84813 0.84698 1.02972 1.59214 1.22554 1.12181 1.91495 1.05084 0.69714 0.73821 0.79090 1.93504 1.71096 1.55064 1.75408 1.93554 1.83438 1.40711 1.74739 1.29995 1.08633 1.08671 1.20901 1.18280 0.84144 0.92942 1.00574 1.20505 1.41722 0.89966 1.03403 0.91324 1.24957 0.94109 0.99119 0.94051 1.69954 1.38743 1.28199 1.14115 0.86639 0.79949 0.82448 0.79181 1.21064 1.19335 1.19870 1.23176 1.02183 0.96580 1.02485 1.22585 1.03239 1.02407 0.89952 1.19500 0.78719 0.89931 1.04050 0.89425 0.89010 0.89897 0.89967 0.89332 0.84404 0.88226 0.92584 0.89431 0.90598 0.91467 0.89527 0.88826 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.01 0.38 -0.09 16 2 C 0.05 0.55 7.37 -13.72 -0.10 0.45 16 3 N -0.46 -6.31 10.54 -7.45 -0.08 -6.39 16 4 C 0.05 0.76 7.78 -82.81 -0.64 0.12 16 5 C -0.26 -3.40 7.50 -35.70 -0.27 -3.66 16 6 S 0.16 1.56 23.19 -107.50 -2.49 -0.93 16 7 C 0.21 2.86 7.00 -4.95 -0.03 2.83 16 8 N -1.02 -16.63 3.64 -115.96 -0.42 -17.05 16 9 S 2.62 53.17 5.43 -107.50 -0.58 52.59 16 10 O -0.96 -20.61 17.67 -57.54 -1.02 -21.63 16 11 O -0.93 -22.12 17.33 -57.54 -1.00 -23.12 16 12 C -0.55 -11.39 6.03 37.16 0.22 -11.17 16 13 C 0.04 1.03 1.26 -155.67 -0.20 0.84 16 14 C -0.52 -14.01 8.17 -34.44 -0.28 -14.29 16 15 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 16 C 0.08 2.24 5.42 -17.82 -0.10 2.14 16 17 N -0.87 -23.84 13.10 55.43 0.73 -23.12 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.21 -4.43 9.95 -26.74 -0.27 -4.70 16 23 C -0.14 -3.18 9.67 -26.73 -0.26 -3.44 16 24 C 0.21 3.17 7.00 -4.55 -0.03 3.14 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.14 3.01 8.14 -51.92 -0.42 2.58 16 31 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 32 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 33 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 2.03 8.14 -51.92 -0.42 1.61 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -32.92 351.30 -11.21 -44.13 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.04 Total: 1.85 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -1.58 Total: -27.84 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.22 Total: -46.55 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -2.01 Total: -44.74 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 54.73 SS G_CDS: -3.08 Total: 51.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.92 -11.21 -44.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867601920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.097 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds