Wall clock time and date at job start Tue Mar 31 2020 14:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.28388 * 124.90094 * 2 1 4 4 C 1.33458 * 117.76301 * 180.02562 * 3 2 1 5 5 C 1.33699 * 113.24571 * 0.02562 * 4 3 2 6 6 S 1.70767 * 124.90392 * 180.02562 * 2 1 3 7 7 C 1.51112 * 110.01408 * 179.97438 * 5 4 3 8 8 N 1.46574 * 107.34882 * 0.02562 * 7 5 4 9 9 S 1.65601 * 126.90091 * 180.02562 * 8 7 5 10 10 O 1.42102 * 104.27147 * 333.92432 * 9 8 7 11 11 O 1.42094 * 104.27613 * 206.06936 * 9 8 7 12 12 C 1.81397 * 104.45037 * 89.99585 * 9 8 7 13 13 C 1.52998 * 109.46914 * 186.06289 * 12 9 8 14 14 C 1.50699 * 115.54898 * 294.74013 * 13 12 9 15 15 H 1.08006 * 120.00240 * 99.44372 * 14 13 12 16 16 C 1.37880 * 120.00444 * 279.45012 * 14 13 12 17 17 N 1.31512 * 119.99579 * 5.45651 * 16 14 13 18 18 Si 1.86802 * 120.00217 * 185.46108 * 16 14 13 19 19 H 1.48496 * 109.46740 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.46903 * 299.99583 * 18 16 14 21 21 H 1.48496 * 109.46876 * 59.99727 * 18 16 14 22 22 C 1.52993 * 117.52123 * 80.44590 * 13 12 9 23 23 C 1.52996 * 60.00149 * 107.48012 * 22 13 12 24 24 C 1.46454 * 106.20358 * 0.25987 * 8 7 5 25 25 H 1.09004 * 109.47193 * 269.95720 * 1 2 3 26 26 H 1.08999 * 109.47066 * 29.95718 * 1 2 3 27 27 H 1.09001 * 109.47012 * 149.95583 * 1 2 3 28 28 H 1.09000 * 109.87244 * 240.55969 * 7 5 4 29 29 H 1.09005 * 109.98254 * 119.50273 * 7 5 4 30 30 H 1.08999 * 109.46937 * 66.05879 * 12 9 8 31 31 H 1.09000 * 109.47118 * 306.05659 * 12 9 8 32 32 H 0.97009 * 120.00185 * 174.99697 * 17 16 14 33 33 H 1.09006 * 117.49669 * 214.97192 * 22 13 12 34 34 H 1.08999 * 117.50358 * 359.97438 * 22 13 12 35 35 H 1.08999 * 117.49879 * 252.50793 * 23 22 13 36 36 H 1.09009 * 117.51920 * 107.48106 * 23 22 13 37 37 H 1.08996 * 109.82253 * 119.27681 * 24 8 7 38 38 H 1.09001 * 109.81650 * 240.20305 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2416 1.0530 0.0000 4 6 3.5659 0.8871 -0.0005 5 6 3.9368 -0.3974 -0.0015 6 16 2.4842 -1.4005 -0.0006 7 6 5.4444 -0.5003 -0.0027 8 7 5.9758 0.8657 -0.0017 9 16 7.5704 1.3123 -0.0030 10 8 8.2420 0.2149 0.6003 11 8 7.5749 2.5972 0.6037 12 6 8.0044 1.4364 -1.7599 13 6 9.5054 1.6987 -1.8971 14 6 9.9866 3.0199 -1.3548 15 1 10.4460 3.0678 -0.3785 16 6 9.8402 4.1675 -2.1048 17 7 9.1858 4.1289 -3.2449 18 14 10.5715 5.7772 -1.5016 19 1 10.2777 6.8526 -2.4826 20 1 9.9767 6.1293 -0.1874 21 1 12.0418 5.6289 -1.3558 22 6 10.4470 0.4992 -1.7733 23 6 10.2085 1.1467 -3.1388 24 6 4.8133 1.7564 0.0064 25 1 -0.3634 -0.0008 1.0277 26 1 -0.3633 0.8904 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 5.7791 -1.0277 -0.8960 29 1 5.7824 -1.0295 0.8883 30 1 7.4490 2.2569 -2.2142 31 1 7.7512 0.5034 -2.2634 32 1 9.0199 4.9483 -3.7370 33 1 11.4145 0.6656 -1.2995 34 1 9.9973 -0.4773 -1.5936 35 1 9.6017 0.5962 -3.8578 36 1 11.0188 1.7393 -3.5637 37 1 4.8292 2.3769 0.9024 38 1 4.8255 2.3880 -0.8819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867601920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:15 Heat of formation + Delta-G solvation = -0.597583 kcal Electronic energy + Delta-G solvation = -23693.455556 eV Core-core repulsion = 20176.699983 eV Total energy + Delta-G solvation = -3516.755573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57512 -38.60213 -38.17559 -38.08644 -36.92501 -34.10974 -32.72226 -30.33452 -29.90657 -29.14203 -27.50591 -24.61099 -23.79186 -22.99570 -21.42779 -20.51894 -20.11060 -19.29293 -18.46060 -17.87330 -17.35658 -17.02661 -16.63031 -16.50600 -15.69976 -15.50490 -15.40555 -15.30083 -14.94070 -14.39221 -14.11940 -13.79139 -13.76516 -13.65924 -13.29590 -13.18186 -13.13826 -13.09477 -12.99898 -12.90769 -12.84976 -12.46305 -12.37083 -12.25771 -11.96049 -11.59197 -10.92268 -10.72286 -10.63623 -10.56886 -10.19521 -9.92811 -9.46536 -8.20701 -6.36127 -0.79490 -0.38626 0.07357 0.63500 1.39077 1.41402 1.48241 1.55030 1.70312 2.39239 2.53244 2.87293 3.05418 3.14031 3.34017 3.38844 3.73124 3.93028 4.13501 4.19848 4.28813 4.30163 4.39539 4.48929 4.50418 4.57586 4.70205 4.70986 4.76053 4.83080 4.94873 4.97630 5.06431 5.19486 5.21117 5.43859 5.58316 5.70553 6.20293 6.60754 6.70413 7.37113 8.86099 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.003577 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.979703 B = 7826.268006 C = 8383.128390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.050 3.950 3 N -0.495 5.495 4 C 0.032 3.968 5 C -0.278 4.278 6 S 0.231 5.769 7 C 0.199 3.801 8 N -1.018 6.018 9 S 2.646 3.354 10 O -0.974 6.974 11 O -0.978 6.978 12 C -0.545 4.545 13 C 0.009 3.991 14 C -0.537 4.537 15 H 0.051 0.949 16 C 0.043 3.957 17 N -0.892 5.892 18 Si 0.934 3.066 19 H -0.274 1.274 20 H -0.277 1.277 21 H -0.266 1.266 22 C -0.192 4.192 23 C -0.140 4.140 24 C 0.200 3.800 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.266 0.734 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 -13.331 2.848 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.228 4.228 3 N -0.211 5.211 4 C -0.099 4.099 5 C -0.400 4.400 6 S 0.487 5.513 7 C 0.072 3.928 8 N -0.855 5.855 9 S 2.746 3.254 10 O -0.964 6.964 11 O -0.969 6.969 12 C -0.679 4.679 13 C 0.006 3.994 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.160 4.160 17 N -0.528 5.528 18 Si 0.759 3.241 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.191 1.191 22 C -0.230 4.230 23 C -0.179 4.179 24 C 0.072 3.928 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.142 0.858 31 H 0.154 0.846 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.501 -13.628 3.474 22.452 hybrid contribution 0.994 2.107 -0.470 2.377 sum -16.507 -11.521 3.003 20.353 Atomic orbital electron populations 1.20713 0.81699 1.05781 1.05549 1.27722 1.03446 0.90278 1.01395 1.65353 1.03457 1.34031 1.18245 1.21118 0.90603 0.94013 1.04197 1.27014 1.02126 0.98322 1.12494 1.83330 0.91715 1.08215 1.68060 1.19641 0.85549 0.83098 1.04474 1.58674 1.21670 1.13954 1.91194 1.04104 0.70109 0.72635 0.78593 1.93471 1.72214 1.55067 1.75675 1.93494 1.84654 1.42975 1.75731 1.29866 1.06469 1.09966 1.21574 1.18399 0.86071 0.92765 1.02140 1.20721 1.41812 0.92023 1.02864 0.93073 1.25519 0.94591 1.01431 0.94432 1.70002 1.39467 1.28713 1.14649 0.85980 0.79632 0.80044 0.78475 1.19923 1.20246 1.19132 1.23239 1.01538 0.96799 1.01379 1.22551 1.02706 1.02286 0.90365 1.19508 0.79418 0.90201 1.03717 0.87734 0.89002 0.87105 0.87652 0.88659 0.85827 0.84591 0.92518 0.89730 0.87944 0.89277 0.91432 0.89724 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.46 71.24 0.75 0.03 16 2 C 0.05 0.94 7.37 88.61 0.65 1.59 16 3 N -0.50 -13.21 10.54 -177.47 -1.87 -15.08 16 4 C 0.03 0.92 7.78 41.71 0.32 1.25 16 5 C -0.28 -6.80 7.50 24.79 0.19 -6.62 16 6 S 0.23 3.79 23.19 -56.49 -1.31 2.48 16 7 C 0.20 5.13 7.00 85.75 0.60 5.73 16 8 N -1.02 -32.97 3.64 -520.78 -1.90 -34.87 16 9 S 2.65 107.56 5.43 -56.49 -0.31 107.26 16 10 O -0.97 -41.16 17.67 -127.65 -2.26 -43.42 16 11 O -0.98 -47.88 17.33 -127.65 -2.21 -50.09 16 12 C -0.55 -22.34 6.03 71.98 0.43 -21.91 16 13 C 0.01 0.41 1.26 -52.93 -0.07 0.35 16 14 C -0.54 -29.52 8.17 25.60 0.21 -29.31 16 15 H 0.05 2.90 7.82 -2.91 -0.02 2.88 16 16 C 0.04 2.37 5.42 84.66 0.46 2.83 16 17 N -0.89 -49.09 13.10 21.45 0.28 -48.81 16 18 Si 0.93 44.04 29.54 68.60 2.03 46.07 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 C -0.19 -7.98 9.95 30.59 0.30 -7.68 16 23 C -0.14 -6.10 9.67 30.59 0.30 -5.80 16 24 C 0.20 6.28 7.00 86.07 0.60 6.88 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.12 5.45 8.14 -2.39 -0.02 5.43 16 31 H 0.14 4.42 8.09 -2.39 -0.02 4.40 16 32 H 0.27 13.97 8.32 -92.70 -0.77 13.19 16 33 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 34 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 37 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -71.70 351.30 -1.72 -73.43 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.07 Total: 15.69 kcal Atomic # 6 Polarization: -57.40 SS G_CDS: 4.75 Total: -52.65 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -3.49 Total: -98.76 kcal Atomic # 8 Polarization: -89.04 SS G_CDS: -4.47 Total: -93.51 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 111.35 SS G_CDS: -1.62 Total: 109.74 kcal Total: -71.70 -1.72 -73.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867601920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.828 kcal (2) G-P(sol) polarization free energy of solvation -71.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds