Wall clock time and date at job start Tue Mar 31 2020 15:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00546 * 2 1 4 4 H 1.48505 * 109.47045 * 270.00234 * 3 2 1 5 5 H 1.48506 * 109.46955 * 29.99783 * 3 2 1 6 6 H 1.48498 * 109.47350 * 149.99602 * 3 2 1 7 7 C 1.37882 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99314 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.33792 * 124.17224 * 270.03835 * 10 9 7 12 12 O 1.21541 * 123.77082 * 359.95196 * 11 10 9 13 13 N 1.34867 * 112.50101 * 180.02562 * 11 10 9 14 14 C 1.47317 * 106.43685 * 359.86480 * 13 11 10 15 15 H 1.09002 * 110.59801 * 241.51999 * 14 13 11 16 16 C 1.50703 * 110.60164 * 118.72685 * 14 13 11 17 17 C 1.38257 * 120.00038 * 323.25872 * 16 14 13 18 18 C 1.38207 * 120.00093 * 179.78357 * 17 16 14 19 19 C 1.38260 * 119.99973 * 0.46576 * 18 17 16 20 20 C 1.38216 * 119.99775 * 359.76650 * 19 18 17 21 21 C 1.50699 * 119.99844 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.46954 * 270.01846 * 21 20 19 23 23 F 1.39901 * 109.47398 * 30.01870 * 21 20 19 24 24 F 1.39898 * 109.47070 * 150.01972 * 21 20 19 25 25 C 1.38205 * 119.99920 * 143.52666 * 16 14 13 26 26 C 1.34762 * 124.18083 * 89.99457 * 10 9 7 27 27 O 1.21234 * 127.15867 * 0.07567 * 26 10 9 28 28 H 0.97002 * 119.99599 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47725 * 59.99283 * 9 7 2 30 30 H 1.09002 * 109.46949 * 299.99599 * 9 7 2 31 31 H 0.96995 * 126.87324 * 179.97438 * 13 11 10 32 32 H 1.08003 * 119.99930 * 359.97438 * 17 16 14 33 33 H 1.08000 * 120.00243 * 180.24852 * 18 17 16 34 34 H 1.08001 * 120.00000 * 179.78457 * 19 18 17 35 35 H 1.08003 * 120.00072 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0018 11 6 2.6926 -4.1840 -1.1045 12 8 2.3968 -3.8376 -2.2314 13 7 3.5500 -5.1883 -0.8306 14 6 3.6299 -5.2794 0.6376 15 1 4.6476 -5.0898 0.9788 16 6 3.1562 -6.6293 1.1117 17 6 2.1019 -7.2554 0.4731 18 6 1.6704 -8.4953 0.9050 19 6 2.2869 -9.1053 1.9818 20 6 3.3378 -8.4772 2.6232 21 6 4.0101 -9.1423 3.7965 22 9 3.3671 -8.7621 4.9794 23 9 3.9353 -10.5317 3.6508 24 9 5.3521 -8.7504 3.8486 25 6 3.7722 -7.2388 2.1883 26 6 2.6940 -4.1877 1.1173 27 8 2.4402 -3.8931 2.2655 28 1 -0.4850 0.8401 0.0004 29 1 0.6245 -2.5571 -0.8895 30 1 0.6240 -2.5567 0.8903 31 1 4.0229 -5.7412 -1.4721 32 1 1.6174 -6.7769 -0.3653 33 1 0.8494 -8.9862 0.4036 34 1 1.9474 -10.0726 2.3215 35 1 4.5933 -6.7479 2.6896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871901539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:13 Heat of formation + Delta-G solvation = -164.347667 kcal Electronic energy + Delta-G solvation = -27527.277413 eV Core-core repulsion = 22883.367541 eV Total energy + Delta-G solvation = -4643.909872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.40686 -47.93575 -47.85121 -42.01109 -39.60219 -37.97749 -35.77795 -34.69668 -32.70959 -32.18209 -31.64920 -28.00210 -26.86050 -26.34079 -23.64840 -22.91081 -22.61046 -21.39278 -19.94059 -18.73785 -18.66495 -18.56079 -17.51411 -17.08869 -16.61832 -16.30886 -15.84668 -15.43291 -15.03239 -14.92593 -14.78015 -14.66072 -14.53449 -14.32083 -14.12174 -14.02173 -13.99190 -13.71713 -13.56407 -13.28940 -13.09837 -12.92598 -12.38240 -11.81497 -11.60832 -11.59539 -11.19295 -10.79878 -10.62476 -10.18354 -10.01328 -9.84416 -9.56955 -9.43727 -9.11085 -8.67728 -8.55979 -6.19039 -4.24676 0.55964 0.80861 2.05765 2.38216 2.76048 3.13703 3.27065 3.32098 3.34580 3.40485 3.49692 3.63321 3.74479 4.14837 4.17980 4.34912 4.44379 4.50488 4.63039 4.81231 4.93270 5.05251 5.17314 5.29451 5.44131 5.72628 5.74530 5.90665 6.03112 6.34754 6.46728 6.93335 7.02748 7.13843 7.73223 7.82043 7.94444 7.96742 8.60933 8.78253 9.40589 10.90356 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.003074 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.170175 B = 9107.928759 C = 9628.797367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.249 3.751 10 N -0.554 5.554 11 C 0.699 3.301 12 O -0.534 6.534 13 N -0.735 5.735 14 C 0.131 3.869 15 H 0.131 0.869 16 C -0.091 4.091 17 C -0.063 4.063 18 C -0.117 4.117 19 C -0.064 4.064 20 C -0.185 4.185 21 C 0.510 3.490 22 F -0.174 7.174 23 F -0.178 7.178 24 F -0.176 7.176 25 C -0.046 4.046 26 C 0.526 3.474 27 O -0.462 6.462 28 H 0.267 0.733 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.434 0.566 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 -21.182 4.033 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.132 3.868 10 N -0.298 5.298 11 C 0.401 3.599 12 O -0.406 6.406 13 N -0.401 5.401 14 C 0.021 3.979 15 H 0.148 0.852 16 C -0.093 4.093 17 C -0.082 4.082 18 C -0.135 4.135 19 C -0.083 4.083 20 C -0.187 4.187 21 C 0.456 3.544 22 F -0.156 7.156 23 F -0.160 7.160 24 F -0.158 7.158 25 C -0.064 4.064 26 C 0.311 3.689 27 O -0.332 6.332 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.278 0.722 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.927 -20.570 4.091 22.088 hybrid contribution 0.820 0.574 -0.043 1.002 sum 7.747 -19.996 4.047 21.823 Atomic orbital electron populations 1.69920 1.06029 1.27527 1.49317 1.24901 0.94973 0.99408 0.94447 0.86376 0.79703 0.82393 0.78289 1.20344 1.20879 1.19746 1.21237 0.93425 0.90089 1.52778 0.92130 1.19644 0.86500 0.80626 1.00011 1.46836 1.43022 1.33930 1.06003 1.16080 0.79134 0.79630 0.85103 1.90981 1.62744 1.66182 1.20723 1.45657 1.49948 1.38406 1.06061 1.20851 1.01967 0.92447 0.82627 0.85182 1.19521 0.97616 0.95072 0.97067 1.21313 0.93890 0.94430 0.98521 1.21149 1.00348 0.95277 0.96742 1.21002 0.93113 0.99657 0.94487 1.19884 1.01867 0.98203 0.98704 1.18247 0.76697 0.76419 0.83008 1.93249 1.81461 1.90974 1.49873 1.93185 1.96084 1.30908 1.95791 1.93197 1.35196 1.90663 1.96716 1.20746 0.98652 0.92448 0.94588 1.20357 0.80721 0.82138 0.85715 1.90771 1.59319 1.64966 1.18144 0.92340 0.92677 0.92891 0.72181 0.84783 0.84328 0.84489 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -15.02 9.39 -34.44 -0.32 -15.35 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 6.39 5.45 -5.19 -0.03 6.36 16 10 N -0.55 -11.61 2.59 -121.92 -0.32 -11.92 16 11 C 0.70 13.21 8.63 -87.71 -0.76 12.45 16 12 O -0.53 -12.05 17.48 5.33 0.09 -11.96 16 13 N -0.73 -9.42 5.46 -60.23 -0.33 -9.75 16 14 C 0.13 1.65 3.89 -69.35 -0.27 1.38 16 15 H 0.13 1.29 8.06 -51.93 -0.42 0.87 16 16 C -0.09 -1.00 5.06 -104.63 -0.53 -1.53 16 17 C -0.06 -0.65 9.34 -39.59 -0.37 -1.02 16 18 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 19 C -0.06 -0.55 9.40 -39.58 -0.37 -0.92 16 20 C -0.19 -1.79 5.45 -104.62 -0.57 -2.36 16 21 C 0.51 4.97 3.36 36.01 0.12 5.09 16 22 F -0.17 -1.90 17.30 2.25 0.04 -1.86 16 23 F -0.18 -1.67 16.46 2.25 0.04 -1.63 16 24 F -0.18 -1.75 16.46 2.25 0.04 -1.71 16 25 C -0.05 -0.46 9.04 -39.59 -0.36 -0.82 16 26 C 0.53 9.71 7.62 -10.56 -0.08 9.63 16 27 O -0.46 -9.87 17.76 5.60 0.10 -9.77 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.06 1.50 7.86 -51.93 -0.41 1.09 16 30 H 0.05 1.43 8.00 -51.93 -0.42 1.01 16 31 H 0.43 4.13 8.96 -40.82 -0.37 3.76 16 32 H 0.13 1.45 7.66 -52.48 -0.40 1.04 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.14 0.88 7.60 -52.49 -0.40 0.49 16 35 H 0.14 1.24 7.60 -52.48 -0.40 0.84 16 LS Contribution 329.73 15.07 4.97 4.97 Total: -1.00 -33.03 329.73 -6.46 -39.50 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -2.78 Total: -0.58 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: -4.03 Total: 13.27 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.09 Total: -46.75 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.19 Total: -21.73 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.11 Total: -5.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.03 -6.46 -39.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871901539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.851 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds