Wall clock time and date at job start Tue Mar 31 2020 15:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00546 * 2 1 4 4 H 1.48505 * 109.47045 * 270.00234 * 3 2 1 5 5 H 1.48506 * 109.46955 * 29.99783 * 3 2 1 6 6 H 1.48498 * 109.47350 * 149.99602 * 3 2 1 7 7 C 1.37882 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99314 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.33792 * 124.17224 * 270.03835 * 10 9 7 12 12 O 1.21541 * 123.77082 * 359.95196 * 11 10 9 13 13 N 1.34867 * 112.50101 * 180.02562 * 11 10 9 14 14 C 1.47317 * 106.43685 * 359.86480 * 13 11 10 15 15 H 1.09002 * 110.59801 * 241.51999 * 14 13 11 16 16 C 1.50703 * 110.60164 * 118.72685 * 14 13 11 17 17 C 1.38257 * 120.00038 * 323.25872 * 16 14 13 18 18 C 1.38207 * 120.00093 * 179.78357 * 17 16 14 19 19 C 1.38260 * 119.99973 * 0.46576 * 18 17 16 20 20 C 1.38216 * 119.99775 * 359.76650 * 19 18 17 21 21 C 1.50699 * 119.99844 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.46954 * 270.01846 * 21 20 19 23 23 F 1.39901 * 109.47398 * 30.01870 * 21 20 19 24 24 F 1.39898 * 109.47070 * 150.01972 * 21 20 19 25 25 C 1.38205 * 119.99920 * 143.52666 * 16 14 13 26 26 C 1.34762 * 124.18083 * 89.99457 * 10 9 7 27 27 O 1.21234 * 127.15867 * 0.07567 * 26 10 9 28 28 H 0.97002 * 119.99599 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47725 * 59.99283 * 9 7 2 30 30 H 1.09002 * 109.46949 * 299.99599 * 9 7 2 31 31 H 0.96995 * 126.87324 * 179.97438 * 13 11 10 32 32 H 1.08003 * 119.99930 * 359.97438 * 17 16 14 33 33 H 1.08000 * 120.00243 * 180.24852 * 18 17 16 34 34 H 1.08001 * 120.00000 * 179.78457 * 19 18 17 35 35 H 1.08003 * 120.00072 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0018 11 6 2.6926 -4.1840 -1.1045 12 8 2.3968 -3.8376 -2.2314 13 7 3.5500 -5.1883 -0.8306 14 6 3.6299 -5.2794 0.6376 15 1 4.6476 -5.0898 0.9788 16 6 3.1562 -6.6293 1.1117 17 6 2.1019 -7.2554 0.4731 18 6 1.6704 -8.4953 0.9050 19 6 2.2869 -9.1053 1.9818 20 6 3.3378 -8.4772 2.6232 21 6 4.0101 -9.1423 3.7965 22 9 3.3671 -8.7621 4.9794 23 9 3.9353 -10.5317 3.6508 24 9 5.3521 -8.7504 3.8486 25 6 3.7722 -7.2388 2.1883 26 6 2.6940 -4.1877 1.1173 27 8 2.4402 -3.8931 2.2655 28 1 -0.4850 0.8401 0.0004 29 1 0.6245 -2.5571 -0.8895 30 1 0.6240 -2.5567 0.8903 31 1 4.0229 -5.7412 -1.4721 32 1 1.6174 -6.7769 -0.3653 33 1 0.8494 -8.9862 0.4036 34 1 1.9474 -10.0726 2.3215 35 1 4.5933 -6.7479 2.6896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871901539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:12 Heat of formation + Delta-G solvation = -185.873671 kcal Electronic energy + Delta-G solvation = -27528.210851 eV Core-core repulsion = 22883.367541 eV Total energy + Delta-G solvation = -4644.843310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.16905 -48.67997 -48.63952 -43.43161 -40.46196 -39.53635 -37.22695 -36.37870 -34.59961 -33.02939 -32.59463 -29.90312 -28.08517 -27.10120 -25.57167 -24.12616 -23.51456 -22.42815 -21.46715 -19.54490 -19.47709 -19.39178 -18.93781 -18.88531 -17.84577 -17.44235 -17.19512 -16.82162 -16.54270 -16.18827 -15.90515 -15.59126 -15.48710 -15.38061 -15.17070 -15.08440 -14.89004 -14.78960 -14.64785 -14.55929 -14.17558 -13.95189 -13.69997 -13.69344 -13.16066 -12.70071 -12.61431 -12.43940 -12.33190 -11.98836 -11.90582 -11.32886 -10.75332 -10.71499 -10.49380 -10.28560 -10.01872 -8.33276 -6.47928 -0.21477 0.05030 0.60966 1.35252 1.39628 1.40915 1.51500 1.62277 2.05907 2.14209 2.34539 2.37536 2.69103 2.94956 2.99872 3.11800 3.31982 3.41658 3.70389 3.92038 4.00122 4.12011 4.28667 4.33111 4.53442 4.64797 4.77377 4.96432 5.01867 5.03911 5.16601 5.26757 5.56685 5.62282 5.83271 5.85688 6.26818 6.43559 6.58456 7.14237 7.25901 8.76558 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.003074 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.170175 B = 9107.928759 C = 9628.797367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.557 4.557 8 H 0.057 0.943 9 C 0.265 3.735 10 N -0.570 5.570 11 C 0.699 3.301 12 O -0.577 6.577 13 N -0.699 5.699 14 C 0.153 3.847 15 H 0.171 0.829 16 C -0.104 4.104 17 C -0.074 4.074 18 C -0.113 4.113 19 C -0.057 4.057 20 C -0.193 4.193 21 C 0.514 3.486 22 F -0.183 7.183 23 F -0.175 7.175 24 F -0.177 7.177 25 C -0.046 4.046 26 C 0.518 3.482 27 O -0.498 6.498 28 H 0.272 0.728 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.455 0.545 32 H 0.126 0.874 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -22.602 4.350 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.145 3.855 10 N -0.313 5.313 11 C 0.400 3.600 12 O -0.453 6.453 13 N -0.366 5.366 14 C 0.044 3.956 15 H 0.188 0.812 16 C -0.106 4.106 17 C -0.092 4.092 18 C -0.130 4.130 19 C -0.075 4.075 20 C -0.194 4.194 21 C 0.460 3.540 22 F -0.164 7.164 23 F -0.156 7.156 24 F -0.159 7.159 25 C -0.064 4.064 26 C 0.305 3.695 27 O -0.369 6.369 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.303 0.697 32 H 0.144 0.856 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.610 -22.068 4.411 24.095 hybrid contribution 0.265 0.887 -0.090 0.930 sum 8.875 -21.181 4.322 23.368 Atomic orbital electron populations 1.70027 1.07518 1.28721 1.49727 1.25850 0.95919 1.03147 0.93737 0.85325 0.78546 0.77808 0.78645 1.19581 1.19853 1.19014 1.21524 0.93416 0.91417 1.53179 0.92502 1.19025 0.86985 0.81965 0.97504 1.46729 1.43051 1.33548 1.08006 1.16118 0.79608 0.80423 0.83823 1.90948 1.64461 1.67842 1.22094 1.45382 1.47879 1.36387 1.06919 1.20852 1.02074 0.91164 0.81524 0.81221 1.19310 0.98787 0.94202 0.98278 1.21401 0.93849 0.95365 0.98579 1.21416 1.00626 0.94443 0.96538 1.21329 0.92098 1.00325 0.93732 1.19975 1.02385 0.98252 0.98832 1.18217 0.76567 0.76531 0.82693 1.93236 1.81643 1.91090 1.50450 1.93192 1.96062 1.30636 1.95740 1.93195 1.35290 1.90695 1.96701 1.20861 0.98887 0.92626 0.94041 1.21277 0.80766 0.82775 0.84632 1.90739 1.60627 1.66269 1.19298 0.91921 0.95324 0.95232 0.69701 0.85632 0.81799 0.82199 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 13.29 21.45 0.28 -54.45 16 2 C 0.01 0.79 5.46 84.66 0.46 1.25 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.56 -32.08 9.39 25.60 0.24 -31.84 16 8 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 9 C 0.26 14.27 5.45 85.63 0.47 14.74 16 10 N -0.57 -24.51 2.59 -776.90 -2.01 -26.52 16 11 C 0.70 26.57 8.63 179.33 1.55 28.12 16 12 O -0.58 -26.69 17.48 -3.85 -0.07 -26.76 16 13 N -0.70 -16.77 5.46 -462.69 -2.53 -19.30 16 14 C 0.15 3.55 3.89 43.63 0.17 3.72 16 15 H 0.17 2.75 8.06 -2.39 -0.02 2.74 16 16 C -0.10 -2.07 5.06 -19.87 -0.10 -2.17 16 17 C -0.07 -1.39 9.34 22.27 0.21 -1.18 16 18 C -0.11 -1.60 10.05 22.27 0.22 -1.37 16 19 C -0.06 -0.79 9.40 22.27 0.21 -0.58 16 20 C -0.19 -3.23 5.45 -19.87 -0.11 -3.34 16 21 C 0.51 8.84 3.36 71.24 0.24 9.08 16 22 F -0.18 -3.68 17.30 44.97 0.78 -2.90 16 23 F -0.17 -2.84 16.46 44.97 0.74 -2.10 16 24 F -0.18 -3.14 16.46 44.97 0.74 -2.39 16 25 C -0.05 -0.81 9.04 22.27 0.20 -0.60 16 26 C 0.52 19.14 7.62 87.94 0.67 19.81 16 27 O -0.50 -21.58 17.76 -2.89 -0.05 -21.63 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.03 1.67 7.86 -2.39 -0.02 1.65 16 30 H 0.03 1.70 8.00 -2.39 -0.02 1.68 16 31 H 0.45 7.49 8.96 -92.71 -0.83 6.66 16 32 H 0.13 2.58 7.66 -2.91 -0.02 2.56 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.16 1.47 7.60 -2.91 -0.02 1.45 16 35 H 0.15 2.27 7.60 -2.91 -0.02 2.24 16 Total: -1.00 -74.37 329.73 4.69 -69.67 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 0.35 Total: 4.37 kcal Atomic # 6 Polarization: 31.20 SS G_CDS: 4.43 Total: 35.63 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -4.25 Total: -100.27 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.12 Total: -48.39 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 2.26 Total: -7.39 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -74.37 4.69 -69.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871901539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.199 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds