Wall clock time and date at job start Tue Mar 31 2020 14:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00330 * 3 2 1 5 5 H 1.48507 * 109.46945 * 30.00625 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 N 1.46506 * 109.46840 * 66.20365 * 14 13 12 16 16 C 1.35008 * 126.03426 * 94.71641 * 15 14 13 17 17 C 1.35365 * 107.73079 * 179.87399 * 16 15 14 18 18 Br 1.89101 * 126.04684 * 180.14975 * 17 16 15 19 19 C 1.39919 * 107.90817 * 0.39023 * 17 16 15 20 20 N 1.30846 * 108.21015 * 359.75544 * 19 17 16 21 21 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 22 22 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 23 23 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 25 25 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 26 26 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 27 27 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 28 28 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 29 29 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 30 30 H 1.08997 * 109.46863 * 186.20099 * 14 13 12 31 31 H 1.09003 * 109.47129 * 306.20540 * 14 13 12 32 32 H 1.08003 * 126.13643 * 0.02562 * 16 15 14 33 33 H 1.08001 * 125.89406 * 179.78552 * 19 17 16 34 34 H 1.09002 * 109.48908 * 180.71202 * 21 13 12 35 35 H 1.09002 * 109.49369 * 60.64073 * 21 13 12 36 36 H 1.08997 * 109.49355 * 296.78047 * 22 10 9 37 37 H 1.09003 * 109.49032 * 56.82589 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 7 3.5417 -8.4445 -0.9460 16 6 3.2224 -9.1772 -2.0341 17 6 2.5520 -10.2741 -1.6102 18 35 1.8668 -11.6528 -2.7082 19 6 2.4508 -10.2047 -0.2164 20 7 3.0438 -9.1086 0.1825 21 6 4.0043 -4.7809 -1.1842 22 6 2.9687 -3.6562 -1.2558 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 0.9734 -4.8433 1.1788 27 1 0.8254 -5.0915 -0.5780 28 1 3.2356 -5.8353 1.1420 29 1 2.0486 -6.9718 0.4571 30 1 4.9008 -7.1180 -1.8359 31 1 4.9009 -7.1180 -0.0559 32 1 3.4613 -8.9333 -3.0587 33 1 1.9673 -10.9308 0.4203 34 1 4.5519 -4.8316 -2.1253 35 1 4.6998 -4.5834 -0.3685 36 1 2.2897 -3.8396 -2.0885 37 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872734288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:48 Heat of formation + Delta-G solvation = 103.910890 kcal Electronic energy + Delta-G solvation = -19914.833454 eV Core-core repulsion = 16775.678196 eV Total energy + Delta-G solvation = -3139.155258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46897 -38.80695 -35.48143 -32.95893 -32.14924 -31.65593 -30.56861 -29.27889 -27.98702 -25.93849 -23.92029 -23.16494 -21.56016 -21.11924 -21.02818 -19.31565 -17.41475 -16.48894 -16.33392 -15.12116 -15.00757 -14.79152 -14.39428 -14.31016 -13.96445 -13.53104 -13.48357 -13.30468 -13.24532 -12.35075 -12.11888 -11.73157 -11.32685 -11.21984 -11.18461 -10.97560 -10.82131 -10.73662 -10.50874 -10.43799 -10.27904 -9.89790 -9.69927 -9.22009 -8.75450 -8.48650 -8.39586 -7.30511 -6.05902 -4.07954 1.41152 1.55851 2.35732 2.39722 3.28767 3.35331 3.39040 3.84081 4.25017 4.38820 4.53024 4.79571 4.84996 4.90934 5.18204 5.25862 5.29691 5.34984 5.43569 5.61172 5.71859 5.76035 5.91768 6.09339 6.16874 6.37552 6.43670 6.53503 6.56525 6.86509 7.02765 7.27290 7.30828 7.34675 7.75041 8.03798 8.14655 8.49372 8.99273 9.56471 11.04976 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.034323 B = 0.002326 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.581470 B =12034.371397 C =12245.131662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.058 3.942 12 C 0.062 3.938 13 N -0.555 5.555 14 C 0.299 3.701 15 N -0.353 5.353 16 C 0.114 3.886 17 C -0.249 4.249 18 Br -0.028 7.028 19 C 0.077 3.923 20 N -0.281 5.281 21 C 0.063 3.937 22 C 0.068 3.932 23 H 0.262 0.738 24 H -0.008 1.008 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.182 0.818 33 H 0.189 0.811 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.030 0.970 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -23.829 -5.889 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.066 4.066 13 N -0.282 5.282 14 C 0.088 3.912 15 N -0.134 5.134 16 C -0.037 4.037 17 C -0.340 4.340 18 Br 0.055 6.945 19 C -0.111 4.111 20 N -0.102 5.102 21 C -0.064 4.064 22 C -0.061 4.061 23 H 0.071 0.929 24 H 0.010 0.990 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.199 0.801 33 H 0.206 0.794 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.626 -23.291 -5.245 25.063 hybrid contribution 0.144 0.741 -0.529 0.922 sum 7.771 -22.550 -5.774 24.540 Atomic orbital electron populations 1.69955 1.06089 1.26843 1.50819 1.24997 0.94861 0.99341 0.95401 0.86501 0.79794 0.83107 0.78029 1.20716 1.21228 1.19794 1.21133 0.93408 0.89918 1.50287 0.91920 1.19703 0.90014 0.87202 0.96185 1.62310 1.28298 1.02814 1.32953 1.22056 0.94689 0.89765 1.00593 1.22240 0.96258 0.99308 0.88790 1.62142 1.25797 1.03348 1.36920 1.22174 0.88679 0.77010 1.03354 1.48765 1.42952 1.17949 1.03749 1.22403 0.96287 0.90883 0.94125 1.21751 1.17046 1.00531 0.94710 1.96602 1.85747 1.46328 1.65855 1.23840 0.98349 0.95967 0.92955 1.77491 1.16436 1.07682 1.08578 1.22231 0.96476 0.87259 1.00472 1.21983 0.95384 0.97137 0.91556 0.92866 0.99040 0.95186 0.90846 0.95276 0.93886 0.90366 0.87285 0.90975 0.80138 0.79428 0.90664 0.93541 0.95186 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -14.09 8.47 -34.44 -0.29 -14.38 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 9 C 0.19 5.05 4.72 -4.98 -0.02 5.02 16 10 N -0.54 -11.52 4.70 -235.90 -1.11 -12.63 16 11 C 0.06 1.09 5.61 -3.76 -0.02 1.06 16 12 C 0.06 0.96 5.47 -3.77 -0.02 0.94 16 13 N -0.56 -7.59 4.85 -238.35 -1.16 -8.74 16 14 C 0.30 3.13 6.15 -63.30 -0.39 2.74 16 15 N -0.35 -4.03 3.44 -64.34 -0.22 -4.25 16 16 C 0.11 1.15 11.45 -17.18 -0.20 0.95 16 17 C -0.25 -2.59 6.53 -39.98 -0.26 -2.85 16 18 Br -0.03 -0.26 34.08 -68.01 -2.32 -2.57 16 19 C 0.08 0.84 12.01 -17.34 -0.21 0.63 16 20 N -0.28 -3.56 11.17 30.64 0.34 -3.22 16 21 C 0.06 0.88 5.61 -3.76 -0.02 0.86 16 22 C 0.07 1.27 5.43 -3.77 -0.02 1.25 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 25 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 26 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 30 H 0.11 0.82 8.01 -51.93 -0.42 0.40 16 31 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 32 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.79 6.79 -51.93 -0.35 1.44 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -30.89 325.06 -10.65 -41.54 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.25 Total: -3.18 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.55 Total: -2.31 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -1.41 Total: -54.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.32 Total: -2.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.89 -10.65 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.451 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds