Wall clock time and date at job start Tue Mar 31 2020 14:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00330 * 3 2 1 5 5 H 1.48507 * 109.46945 * 30.00625 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 N 1.46506 * 109.46840 * 66.20365 * 14 13 12 16 16 C 1.35008 * 126.03426 * 94.71641 * 15 14 13 17 17 C 1.35365 * 107.73079 * 179.87399 * 16 15 14 18 18 Br 1.89101 * 126.04684 * 180.14975 * 17 16 15 19 19 C 1.39919 * 107.90817 * 0.39023 * 17 16 15 20 20 N 1.30846 * 108.21015 * 359.75544 * 19 17 16 21 21 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 22 22 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 23 23 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 25 25 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 26 26 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 27 27 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 28 28 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 29 29 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 30 30 H 1.08997 * 109.46863 * 186.20099 * 14 13 12 31 31 H 1.09003 * 109.47129 * 306.20540 * 14 13 12 32 32 H 1.08003 * 126.13643 * 0.02562 * 16 15 14 33 33 H 1.08001 * 125.89406 * 179.78552 * 19 17 16 34 34 H 1.09002 * 109.48908 * 180.71202 * 21 13 12 35 35 H 1.09002 * 109.49369 * 60.64073 * 21 13 12 36 36 H 1.08997 * 109.49355 * 296.78047 * 22 10 9 37 37 H 1.09003 * 109.49032 * 56.82589 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 7 3.5417 -8.4445 -0.9460 16 6 3.2224 -9.1772 -2.0341 17 6 2.5520 -10.2741 -1.6102 18 35 1.8668 -11.6528 -2.7082 19 6 2.4508 -10.2047 -0.2164 20 7 3.0438 -9.1086 0.1825 21 6 4.0043 -4.7809 -1.1842 22 6 2.9687 -3.6562 -1.2558 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 0.9734 -4.8433 1.1788 27 1 0.8254 -5.0915 -0.5780 28 1 3.2356 -5.8353 1.1420 29 1 2.0486 -6.9718 0.4571 30 1 4.9008 -7.1180 -1.8359 31 1 4.9009 -7.1180 -0.0559 32 1 3.4613 -8.9333 -3.0587 33 1 1.9673 -10.9308 0.4203 34 1 4.5519 -4.8316 -2.1253 35 1 4.6998 -4.5834 -0.3685 36 1 2.2897 -3.8396 -2.0885 37 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872734288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:47 Heat of formation + Delta-G solvation = 82.544584 kcal Electronic energy + Delta-G solvation = -19915.759966 eV Core-core repulsion = 16775.678196 eV Total energy + Delta-G solvation = -3140.081770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27028 -40.14618 -36.92094 -34.74739 -33.34859 -32.50096 -31.94158 -30.32994 -29.40367 -27.43939 -25.26650 -24.54115 -23.32135 -21.95957 -21.86024 -20.73990 -18.54907 -18.20215 -17.60935 -16.64191 -16.15797 -15.91774 -15.86834 -15.64663 -15.35886 -14.79001 -14.71752 -14.40785 -14.11962 -14.03282 -13.52860 -13.09898 -13.01550 -12.72309 -12.57937 -12.30851 -12.20677 -12.06019 -12.00805 -11.93815 -11.59361 -11.25116 -11.02129 -10.64925 -10.61821 -9.67602 -9.36101 -9.09861 -8.22300 -6.33463 0.64072 0.78853 1.41061 1.42897 1.54392 1.57221 1.62562 2.39137 2.78824 3.10000 3.23678 3.50098 3.84605 3.86995 4.05914 4.11443 4.16152 4.27994 4.32175 4.44496 4.54315 4.60006 4.61897 4.80208 4.87987 4.95610 4.99184 5.19391 5.21551 5.38168 5.59111 5.63010 5.75347 5.99408 6.07561 6.28569 6.54387 6.55054 6.82498 7.36759 8.89307 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.034323 B = 0.002326 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.581470 B =12034.371397 C =12245.131662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.059 3.941 12 C 0.080 3.920 13 N -0.563 5.563 14 C 0.299 3.701 15 N -0.361 5.361 16 C 0.117 3.883 17 C -0.262 4.262 18 Br -0.019 7.019 19 C 0.075 3.925 20 N -0.316 5.316 21 C 0.076 3.924 22 C 0.066 3.934 23 H 0.265 0.735 24 H -0.042 1.042 25 H -0.001 1.001 26 H 0.064 0.936 27 H 0.014 0.986 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.209 0.791 33 H 0.206 0.794 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.917 -24.434 -6.868 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.561 4.561 8 H 0.086 0.914 9 C 0.083 3.917 10 N -0.268 5.268 11 C -0.070 4.070 12 C -0.048 4.048 13 N -0.290 5.290 14 C 0.089 3.911 15 N -0.143 5.143 16 C -0.034 4.034 17 C -0.353 4.353 18 Br 0.063 6.937 19 C -0.113 4.113 20 N -0.137 5.137 21 C -0.051 4.051 22 C -0.062 4.062 23 H 0.073 0.927 24 H -0.024 1.024 25 H 0.017 0.983 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.166 0.834 31 H 0.094 0.906 32 H 0.225 0.775 33 H 0.223 0.777 34 H 0.134 0.866 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.954 -23.932 -6.230 26.658 hybrid contribution -0.632 0.826 -0.254 1.071 sum 9.321 -23.106 -6.485 25.746 Atomic orbital electron populations 1.70098 1.07942 1.28004 1.51692 1.25979 0.95735 1.03441 0.94691 0.85325 0.78527 0.77900 0.78520 1.19581 1.20968 1.18649 1.21435 0.93717 0.90725 1.50181 0.91428 1.19344 0.90115 0.89145 0.93114 1.62249 1.27177 1.02555 1.34812 1.22076 0.95570 0.89823 0.99509 1.21942 0.95488 0.97418 0.89976 1.62078 1.27094 1.04362 1.35446 1.22398 0.87836 0.75316 1.05512 1.48835 1.43377 1.18237 1.03817 1.22891 0.95255 0.90310 0.94914 1.21933 1.17410 1.01145 0.94775 1.96610 1.85679 1.45950 1.65436 1.24224 0.97648 0.95783 0.93646 1.77444 1.17760 1.08700 1.09784 1.22110 0.94669 0.85541 1.02804 1.22034 0.95765 0.98896 0.89536 0.92659 1.02384 0.98284 0.91758 0.96725 0.94173 0.90289 0.83370 0.90576 0.77471 0.77744 0.86607 0.93115 0.96619 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.96 13.29 21.45 0.28 -56.67 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.52 -29.52 8.47 25.60 0.22 -29.30 16 8 H 0.07 3.68 7.13 -2.91 -0.02 3.65 16 9 C 0.21 11.42 4.72 85.56 0.40 11.83 16 10 N -0.54 -23.82 4.70 -900.26 -4.23 -28.05 16 11 C 0.06 2.28 5.61 86.31 0.48 2.76 16 12 C 0.08 2.44 5.47 86.31 0.47 2.91 16 13 N -0.56 -14.09 4.85 -908.02 -4.40 -18.49 16 14 C 0.30 5.27 6.15 170.80 1.05 6.32 16 15 N -0.36 -7.37 3.44 -357.47 -1.23 -8.60 16 16 C 0.12 2.04 11.45 83.54 0.96 2.99 16 17 C -0.26 -4.93 6.53 22.01 0.14 -4.79 16 18 Br -0.02 -0.32 34.08 -20.37 -0.69 -1.02 16 19 C 0.08 1.52 12.01 85.25 1.02 2.54 16 20 N -0.32 -7.56 11.17 -56.99 -0.64 -8.19 16 21 C 0.08 1.92 5.61 86.31 0.48 2.40 16 22 C 0.07 2.44 5.43 86.31 0.47 2.91 16 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 24 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 25 H 0.00 -0.06 8.03 -2.39 -0.02 -0.08 16 26 H 0.06 2.53 8.07 -2.39 -0.02 2.51 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 2.44 6.43 -2.39 -0.02 2.42 16 30 H 0.15 1.47 8.01 -2.39 -0.02 1.45 16 31 H 0.08 1.33 8.12 -2.39 -0.02 1.32 16 32 H 0.21 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.21 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.12 2.05 8.07 -2.39 -0.02 2.03 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 3.05 6.79 -2.39 -0.02 3.03 16 Total: -1.00 -68.80 325.06 -1.66 -70.46 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.06 Total: 3.71 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 6.17 Total: 1.01 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -10.22 Total: -120.01 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -0.69 Total: -1.02 kcal Total: -68.80 -1.66 -70.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.002 kcal (2) G-P(sol) polarization free energy of solvation -68.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds