Wall clock time and date at job start Tue Mar 31 2020 15:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46967 * 259.55696 * 3 2 1 5 5 C 1.37100 * 120.00050 * 263.88130 * 4 3 2 6 6 H 1.08001 * 120.00365 * 198.33227 * 5 4 3 7 7 C 1.38945 * 119.99668 * 18.33270 * 5 4 3 8 8 N 1.31402 * 120.00412 * 17.10670 * 7 5 4 9 9 Si 1.86811 * 119.99870 * 197.10804 * 7 5 4 10 10 H 1.48493 * 109.47022 * 59.99994 * 9 7 5 11 11 H 1.48499 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46923 * 300.00103 * 9 7 5 13 13 C 1.34777 * 120.00015 * 83.88457 * 4 3 2 14 14 O 1.21296 * 119.99804 * 185.63824 * 13 4 3 15 15 C 1.50702 * 120.00283 * 5.63738 * 13 4 3 16 16 H 1.09007 * 109.46664 * 316.91702 * 15 13 4 17 17 O 1.42895 * 109.47051 * 196.91574 * 15 13 4 18 18 C 1.50703 * 109.46980 * 76.91278 * 15 13 4 19 19 C 1.38239 * 119.99510 * 70.17934 * 18 15 13 20 20 C 1.38239 * 119.99534 * 179.76644 * 19 18 15 21 21 C 1.38236 * 119.99987 * 0.50376 * 20 19 18 22 22 C 1.50700 * 120.00254 * 179.72649 * 21 20 19 23 23 F 1.39897 * 109.46808 * 270.02449 * 22 21 20 24 24 F 1.39904 * 109.46899 * 30.01976 * 22 21 20 25 25 F 1.39893 * 109.47408 * 150.02162 * 22 21 20 26 26 C 1.38237 * 119.99882 * 359.75017 * 21 20 19 27 27 C 1.38230 * 120.00351 * 359.97438 * 26 21 20 28 28 H 1.08995 * 109.47371 * 139.56150 * 3 2 1 29 29 H 1.09006 * 109.47266 * 19.55318 * 3 2 1 30 30 H 0.97000 * 120.00548 * 179.97438 * 8 7 5 31 31 H 0.96697 * 114.00334 * 299.99272 * 17 15 13 32 32 H 1.08000 * 120.00449 * 359.97438 * 19 18 15 33 33 H 1.07990 * 119.99903 * 180.22854 * 20 19 18 34 34 H 1.07998 * 119.99954 * 179.97438 * 26 21 20 35 35 H 1.07998 * 120.00355 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0961 0.2512 1.3584 5 6 3.4433 1.5219 1.7385 6 1 4.0677 1.6743 2.6065 7 6 2.9919 2.6136 1.0071 8 7 1.9837 2.4760 0.1757 9 14 3.8185 4.2771 1.2055 10 1 5.2520 4.1648 0.8348 11 1 3.1551 5.2682 0.3207 12 1 3.7058 4.7204 2.6183 13 6 3.2039 -0.7674 2.2343 14 8 3.5096 -0.5461 3.3871 15 6 2.9447 -2.1812 1.7816 16 1 2.0599 -2.2024 1.1452 17 8 2.7311 -3.0150 2.9223 18 6 4.1338 -2.6862 1.0057 19 6 5.3232 -2.9510 1.6586 20 6 6.4126 -3.4188 0.9476 21 6 6.3156 -3.6120 -0.4177 22 6 7.5050 -4.1162 -1.1938 23 9 8.2669 -3.0299 -1.6371 24 9 8.2890 -4.9300 -0.3690 25 9 7.0632 -4.8566 -2.2954 26 6 5.1278 -3.3423 -1.0713 27 6 4.0367 -2.8799 -0.3596 28 1 2.9709 0.7829 -0.6665 29 1 2.9717 -0.9676 -0.3440 30 1 1.6683 3.2382 -0.3347 31 1 3.4795 -3.0441 3.5339 32 1 5.4004 -2.7955 2.7245 33 1 7.3406 -3.6291 1.4582 34 1 5.0521 -3.4928 -2.1381 35 1 3.1088 -2.6687 -0.8703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874261739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:34 Heat of formation + Delta-G solvation = -163.730019 kcal Electronic energy + Delta-G solvation = -28017.383421 eV Core-core repulsion = 23373.500333 eV Total energy + Delta-G solvation = -4643.883089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.28022 -47.80772 -47.72983 -40.32835 -38.66111 -36.59137 -35.62109 -34.43954 -32.69812 -31.78555 -31.25453 -28.19411 -27.56632 -25.54540 -24.16668 -23.10668 -21.69739 -19.76580 -18.69947 -18.58690 -18.51060 -18.14400 -17.40071 -16.88298 -16.36860 -15.72506 -15.22503 -14.98100 -14.61154 -14.58680 -14.38902 -14.20993 -13.99723 -13.91053 -13.88695 -13.72451 -13.60752 -13.46254 -13.16911 -13.08510 -12.80726 -12.11316 -11.95178 -11.79805 -11.65912 -11.43065 -11.24833 -11.16311 -10.72260 -10.57445 -10.52944 -10.49344 -9.42777 -9.38796 -9.17772 -8.53481 -8.22217 -6.63544 -4.17083 0.73527 1.13716 2.53489 2.99072 3.13713 3.15418 3.25267 3.35533 3.56132 3.61138 3.83434 3.89491 3.98640 4.30663 4.40755 4.62084 4.63796 4.69738 4.74806 4.79686 5.04158 5.14733 5.16758 5.42619 5.47003 5.51908 5.77174 5.89792 6.00173 6.02387 6.32467 6.40216 6.58794 7.31738 7.59302 7.76229 8.09694 8.58973 8.80511 9.00009 9.48803 10.40993 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.004062 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.689673 B = 6891.103771 C = 7468.364543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.240 3.760 3 C 0.210 3.790 4 N -0.429 5.429 5 C -0.312 4.312 6 H 0.109 0.891 7 C 0.034 3.966 8 N -0.878 5.878 9 Si 0.933 3.067 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.426 3.574 14 O -0.564 6.564 15 C 0.130 3.870 16 H 0.118 0.882 17 O -0.532 6.532 18 C -0.070 4.070 19 C -0.103 4.103 20 C -0.065 4.065 21 C -0.188 4.188 22 C 0.510 3.490 23 F -0.176 7.176 24 F -0.179 7.179 25 F -0.179 7.179 26 C -0.066 4.066 27 C -0.113 4.113 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.277 0.723 31 H 0.380 0.620 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 -11.695 -5.517 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.078 4.078 3 C 0.083 3.917 4 N -0.149 5.149 5 C -0.439 4.439 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.517 5.517 9 Si 0.759 3.241 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.214 3.786 14 O -0.447 6.447 15 C 0.067 3.933 16 H 0.136 0.864 17 O -0.338 6.338 18 C -0.071 4.071 19 C -0.121 4.121 20 C -0.083 4.083 21 C -0.189 4.189 22 C 0.456 3.544 23 F -0.157 7.157 24 F -0.160 7.160 25 F -0.160 7.160 26 C -0.084 4.084 27 C -0.131 4.131 28 H 0.153 0.847 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.056 -11.547 -5.367 15.068 hybrid contribution 1.366 1.124 0.006 1.769 sum 9.422 -10.422 -5.361 15.038 Atomic orbital electron populations 1.80926 1.13448 1.12000 1.08015 1.29252 0.95297 0.90333 0.92913 1.19036 0.81723 1.02622 0.88338 1.43628 1.55315 1.07743 1.08192 1.19744 1.29326 0.80235 1.14587 0.87299 1.25345 0.94908 1.00227 0.96572 1.69785 1.21939 1.32994 1.26945 0.85874 0.79272 0.80273 0.78705 1.19535 1.20785 1.19655 1.20575 0.85261 0.86466 0.86293 1.90565 1.52559 1.84023 1.17535 1.20798 0.95812 0.89268 0.87455 0.86410 1.86583 1.45360 1.67041 1.34771 1.20691 0.95895 0.95805 0.94701 1.20964 0.91714 0.98397 1.00983 1.20868 0.99388 0.96038 0.92005 1.19939 0.94065 1.09621 0.95290 1.18314 0.83181 0.75374 0.77567 1.93237 1.77734 1.54777 1.89989 1.93183 1.76783 1.73956 1.72121 1.93181 1.89303 1.77833 1.55686 1.20877 0.91164 0.95873 1.00455 1.21074 0.99236 0.99527 0.93236 0.84695 0.89958 0.91242 0.77035 0.84451 0.84580 0.84383 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.64 18.54 42.15 0.78 -9.86 16 2 C 0.24 5.08 12.91 -20.76 -0.27 4.81 16 3 C 0.21 3.94 4.79 -6.83 -0.03 3.91 16 4 N -0.43 -9.45 2.60 -117.93 -0.31 -9.76 16 5 C -0.31 -7.66 9.32 -14.93 -0.14 -7.80 16 6 H 0.11 2.80 7.42 -52.49 -0.39 2.42 16 7 C 0.03 0.79 4.98 -17.47 -0.09 0.71 16 8 N -0.88 -21.17 9.26 55.50 0.51 -20.65 16 9 Si 0.93 18.94 29.59 -169.99 -5.03 13.91 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.43 9.07 6.67 -10.98 -0.07 9.00 16 14 O -0.56 -13.80 16.01 -13.77 -0.22 -14.02 16 15 C 0.13 2.15 2.88 -29.03 -0.08 2.07 16 16 H 0.12 1.90 6.41 -51.93 -0.33 1.57 16 17 O -0.53 -8.77 13.03 -54.55 -0.71 -9.48 16 18 C -0.07 -0.95 4.66 -104.62 -0.49 -1.44 16 19 C -0.10 -1.28 9.14 -39.58 -0.36 -1.65 16 20 C -0.06 -0.73 9.40 -39.58 -0.37 -1.10 16 21 C -0.19 -2.10 5.45 -104.62 -0.57 -2.67 16 22 C 0.51 5.52 3.36 36.01 0.12 5.65 16 23 F -0.18 -2.06 17.30 2.25 0.04 -2.02 16 24 F -0.18 -1.94 16.46 2.25 0.04 -1.90 16 25 F -0.18 -1.91 16.46 2.25 0.04 -1.87 16 26 C -0.07 -0.69 9.40 -39.58 -0.37 -1.07 16 27 C -0.11 -1.30 8.06 -39.59 -0.32 -1.62 16 28 H 0.14 2.62 6.34 -51.93 -0.33 2.29 16 29 H 0.08 1.20 3.34 -51.93 -0.17 1.03 16 30 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.38 5.28 7.48 45.56 0.34 5.62 16 32 H 0.14 1.62 7.23 -52.49 -0.38 1.24 16 33 H 0.14 1.26 7.60 -52.49 -0.40 0.86 16 34 H 0.14 1.16 7.60 -52.49 -0.40 0.76 16 35 H 0.14 1.35 6.83 -52.49 -0.36 0.99 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -29.99 320.17 -4.63 -34.63 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -1.56 Total: 7.39 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -3.05 Total: 8.81 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.99 Total: -40.27 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.93 Total: -23.50 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.99 -4.63 -34.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874261739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.103 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds