Wall clock time and date at job start Tue Mar 31 2020 15:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46967 * 259.55696 * 3 2 1 5 5 C 1.37100 * 120.00050 * 263.88130 * 4 3 2 6 6 H 1.08001 * 120.00365 * 198.33227 * 5 4 3 7 7 C 1.38945 * 119.99668 * 18.33270 * 5 4 3 8 8 N 1.31402 * 120.00412 * 17.10670 * 7 5 4 9 9 Si 1.86811 * 119.99870 * 197.10804 * 7 5 4 10 10 H 1.48493 * 109.47022 * 59.99994 * 9 7 5 11 11 H 1.48499 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46923 * 300.00103 * 9 7 5 13 13 C 1.34777 * 120.00015 * 83.88457 * 4 3 2 14 14 O 1.21296 * 119.99804 * 185.63824 * 13 4 3 15 15 C 1.50702 * 120.00283 * 5.63738 * 13 4 3 16 16 H 1.09007 * 109.46664 * 316.91702 * 15 13 4 17 17 O 1.42895 * 109.47051 * 196.91574 * 15 13 4 18 18 C 1.50703 * 109.46980 * 76.91278 * 15 13 4 19 19 C 1.38239 * 119.99510 * 70.17934 * 18 15 13 20 20 C 1.38239 * 119.99534 * 179.76644 * 19 18 15 21 21 C 1.38236 * 119.99987 * 0.50376 * 20 19 18 22 22 C 1.50700 * 120.00254 * 179.72649 * 21 20 19 23 23 F 1.39897 * 109.46808 * 270.02449 * 22 21 20 24 24 F 1.39904 * 109.46899 * 30.01976 * 22 21 20 25 25 F 1.39893 * 109.47408 * 150.02162 * 22 21 20 26 26 C 1.38237 * 119.99882 * 359.75017 * 21 20 19 27 27 C 1.38230 * 120.00351 * 359.97438 * 26 21 20 28 28 H 1.08995 * 109.47371 * 139.56150 * 3 2 1 29 29 H 1.09006 * 109.47266 * 19.55318 * 3 2 1 30 30 H 0.97000 * 120.00548 * 179.97438 * 8 7 5 31 31 H 0.96697 * 114.00334 * 299.99272 * 17 15 13 32 32 H 1.08000 * 120.00449 * 359.97438 * 19 18 15 33 33 H 1.07990 * 119.99903 * 180.22854 * 20 19 18 34 34 H 1.07998 * 119.99954 * 179.97438 * 26 21 20 35 35 H 1.07998 * 120.00355 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0961 0.2512 1.3584 5 6 3.4433 1.5219 1.7385 6 1 4.0677 1.6743 2.6065 7 6 2.9919 2.6136 1.0071 8 7 1.9837 2.4760 0.1757 9 14 3.8185 4.2771 1.2055 10 1 5.2520 4.1648 0.8348 11 1 3.1551 5.2682 0.3207 12 1 3.7058 4.7204 2.6183 13 6 3.2039 -0.7674 2.2343 14 8 3.5096 -0.5461 3.3871 15 6 2.9447 -2.1812 1.7816 16 1 2.0599 -2.2024 1.1452 17 8 2.7311 -3.0150 2.9223 18 6 4.1338 -2.6862 1.0057 19 6 5.3232 -2.9510 1.6586 20 6 6.4126 -3.4188 0.9476 21 6 6.3156 -3.6120 -0.4177 22 6 7.5050 -4.1162 -1.1938 23 9 8.2669 -3.0299 -1.6371 24 9 8.2890 -4.9300 -0.3690 25 9 7.0632 -4.8566 -2.2954 26 6 5.1278 -3.3423 -1.0713 27 6 4.0367 -2.8799 -0.3596 28 1 2.9709 0.7829 -0.6665 29 1 2.9717 -0.9676 -0.3440 30 1 1.6683 3.2382 -0.3347 31 1 3.4795 -3.0441 3.5339 32 1 5.4004 -2.7955 2.7245 33 1 7.3406 -3.6291 1.4582 34 1 5.0521 -3.4928 -2.1381 35 1 3.1088 -2.6687 -0.8703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874261739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:33 Heat of formation + Delta-G solvation = -181.515311 kcal Electronic energy + Delta-G solvation = -28018.154650 eV Core-core repulsion = 23373.500333 eV Total energy + Delta-G solvation = -4644.654317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.13407 -48.64797 -48.59963 -41.60297 -39.95398 -38.08462 -37.19718 -36.18366 -34.09707 -33.19190 -32.15747 -29.56824 -29.07054 -26.89717 -25.52038 -24.01406 -22.74549 -21.27257 -19.88298 -19.57908 -19.44612 -19.38904 -18.85419 -18.21055 -17.92201 -17.05489 -16.62980 -16.02257 -15.87928 -15.51386 -15.42182 -15.32051 -15.16730 -15.06042 -14.92763 -14.79254 -14.75622 -14.73804 -14.50960 -14.30554 -13.94088 -13.74017 -13.49106 -13.35463 -12.96549 -12.89645 -12.65864 -12.41424 -12.31695 -12.15956 -12.11466 -11.84624 -11.17937 -10.62256 -10.08083 -9.99164 -9.94026 -8.43571 -6.03938 -0.21039 0.25627 1.35774 1.47392 1.55752 1.66473 1.68701 1.92504 2.15613 2.30075 2.39192 2.72477 2.90480 2.97002 3.04630 3.36884 3.43648 3.46797 3.55460 3.70867 3.84305 3.91755 4.11601 4.28255 4.41060 4.48151 4.62549 4.85284 4.91617 5.08325 5.13124 5.35925 5.43132 5.68745 5.91239 6.29465 6.50869 6.91290 7.02748 7.24390 7.76005 8.58382 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.004062 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.689673 B = 6891.103771 C = 7468.364543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.252 3.748 3 C 0.214 3.786 4 N -0.441 5.441 5 C -0.339 4.339 6 H 0.086 0.914 7 C 0.007 3.993 8 N -0.893 5.893 9 Si 0.988 3.012 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.422 3.578 14 O -0.605 6.605 15 C 0.143 3.857 16 H 0.124 0.876 17 O -0.541 6.541 18 C -0.087 4.087 19 C -0.111 4.111 20 C -0.065 4.065 21 C -0.190 4.190 22 C 0.515 3.485 23 F -0.181 7.181 24 F -0.179 7.179 25 F -0.176 7.176 26 C -0.060 4.060 27 C -0.113 4.113 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.277 0.723 31 H 0.390 0.610 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.190 -12.503 -7.056 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.065 4.065 3 C 0.088 3.912 4 N -0.161 5.161 5 C -0.466 4.466 6 H 0.104 0.896 7 C -0.195 4.195 8 N -0.532 5.532 9 Si 0.812 3.188 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.211 3.789 14 O -0.490 6.490 15 C 0.080 3.920 16 H 0.142 0.858 17 O -0.348 6.348 18 C -0.088 4.088 19 C -0.129 4.129 20 C -0.083 4.083 21 C -0.191 4.191 22 C 0.461 3.539 23 F -0.162 7.162 24 F -0.160 7.160 25 F -0.157 7.157 26 C -0.078 4.078 27 C -0.131 4.131 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.088 0.912 31 H 0.241 0.759 32 H 0.155 0.845 33 H 0.171 0.829 34 H 0.182 0.818 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.026 -12.376 -6.924 16.810 hybrid contribution 1.111 1.298 0.524 1.787 sum 10.136 -11.077 -6.400 16.322 Atomic orbital electron populations 1.80927 1.14553 1.13306 1.09082 1.29700 0.95735 0.89234 0.91873 1.19286 0.80239 1.04910 0.86760 1.43771 1.55500 1.07252 1.09566 1.19673 1.30236 0.81968 1.14732 0.89591 1.25925 0.95019 1.02512 0.96078 1.69862 1.22367 1.33647 1.27295 0.85053 0.79006 0.76886 0.77833 1.18407 1.20270 1.20830 1.21485 0.83429 0.88271 0.85693 1.90528 1.53899 1.85226 1.19338 1.20626 0.97428 0.86165 0.87760 0.85830 1.86546 1.46351 1.66626 1.35280 1.20481 0.94984 0.97824 0.95466 1.21045 0.91930 0.98709 1.01261 1.21037 0.99608 0.95395 0.92223 1.20113 0.94469 1.09153 0.95357 1.18214 0.82946 0.75226 0.77537 1.93232 1.77868 1.55084 1.90047 1.93187 1.76784 1.73923 1.72129 1.93189 1.89243 1.77734 1.55537 1.21166 0.90352 0.94591 1.01695 1.21290 1.00467 0.99043 0.92299 0.84987 0.85509 0.91241 0.75908 0.84497 0.82911 0.81778 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.60 18.54 20.00 0.37 -22.22 16 2 C 0.25 10.45 12.91 89.44 1.15 11.61 16 3 C 0.21 7.79 4.79 84.57 0.40 8.19 16 4 N -0.44 -19.42 2.60 -645.41 -1.68 -21.10 16 5 C -0.34 -16.84 9.32 84.04 0.78 -16.06 16 6 H 0.09 4.58 7.42 -2.91 -0.02 4.56 16 7 C 0.01 0.33 4.98 84.93 0.42 0.76 16 8 N -0.89 -42.67 9.26 21.66 0.20 -42.47 16 9 Si 0.99 38.63 29.59 68.60 2.03 40.66 16 10 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 11 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 12 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.42 18.00 6.67 87.66 0.58 18.59 16 14 O -0.60 -30.26 16.01 15.39 0.25 -30.02 16 15 C 0.14 4.61 2.88 29.10 0.08 4.69 16 16 H 0.12 3.80 6.41 -2.38 -0.02 3.79 16 17 O -0.54 -17.52 13.03 -130.51 -1.70 -19.22 16 18 C -0.09 -2.20 4.66 -19.86 -0.09 -2.29 16 19 C -0.11 -2.64 9.14 22.27 0.20 -2.43 16 20 C -0.06 -1.31 9.40 22.27 0.21 -1.10 16 21 C -0.19 -3.71 5.45 -19.87 -0.11 -3.82 16 22 C 0.51 9.81 3.36 71.24 0.24 10.05 16 23 F -0.18 -3.81 17.30 44.97 0.78 -3.03 16 24 F -0.18 -3.46 16.46 44.97 0.74 -2.72 16 25 F -0.18 -3.24 16.46 44.97 0.74 -2.50 16 26 C -0.06 -1.07 9.40 22.27 0.21 -0.86 16 27 C -0.11 -2.27 8.06 22.27 0.18 -2.09 16 28 H 0.13 4.96 6.34 -2.39 -0.02 4.94 16 29 H 0.13 3.40 3.34 -2.38 -0.01 3.39 16 30 H 0.28 12.82 8.31 -92.71 -0.77 12.05 16 31 H 0.39 10.79 7.48 -74.06 -0.55 10.24 16 32 H 0.14 3.16 7.23 -2.91 -0.02 3.14 16 33 H 0.15 2.50 7.60 -2.92 -0.02 2.48 16 34 H 0.16 2.05 7.60 -2.91 -0.02 2.03 16 35 H 0.16 2.48 6.83 -2.91 -0.02 2.46 16 Total: -1.00 -64.54 320.17 6.65 -57.89 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.65 Total: 19.50 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 4.27 Total: 25.24 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.11 Total: -85.80 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.45 Total: -49.24 kcal Atomic # 9 Polarization: -10.51 SS G_CDS: 2.26 Total: -8.25 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -64.54 6.65 -57.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874261739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.628 kcal (2) G-P(sol) polarization free energy of solvation -64.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds