Wall clock time and date at job start Tue Mar 31 2020 15:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 116.99882 * 2 1 4 4 C 1.38728 * 120.03195 * 359.73139 * 3 2 1 5 5 C 1.38128 * 119.97039 * 179.69584 * 4 3 2 6 6 C 1.38474 * 120.03151 * 0.57267 * 5 4 3 7 7 F 1.35093 * 119.97216 * 179.74251 * 6 5 4 8 8 C 1.38439 * 120.05811 * 359.72441 * 6 5 4 9 9 C 1.38170 * 120.02909 * 359.97438 * 8 6 5 10 10 C 1.50704 * 120.01629 * 180.02562 * 9 8 6 11 11 S 1.81402 * 109.46795 * 270.02310 * 10 9 8 12 12 O 1.42100 * 110.54266 * 291.62190 * 11 10 9 13 13 O 1.42094 * 110.54354 * 68.37569 * 11 10 9 14 14 N 1.65600 * 104.44761 * 179.97438 * 11 10 9 15 15 C 1.36936 * 120.00402 * 270.00388 * 14 11 10 16 16 H 1.08010 * 119.99223 * 326.38650 * 15 14 11 17 17 C 1.38812 * 120.00664 * 146.38800 * 15 14 11 18 18 N 1.31616 * 119.99796 * 156.61250 * 17 15 14 19 19 Si 1.86798 * 119.99806 * 336.61483 * 17 15 14 20 20 H 1.48496 * 109.47065 * 95.44610 * 19 17 15 21 21 H 1.48493 * 109.47134 * 215.44749 * 19 17 15 22 22 H 1.48504 * 109.47284 * 335.44752 * 19 17 15 23 23 C 1.46504 * 120.00140 * 89.99767 * 14 11 10 24 24 C 1.47195 * 109.47239 * 94.82084 * 23 14 11 25 25 N 6.61521 * 119.85674 * 222.70194 * 2 1 3 26 26 H 1.09002 * 109.47466 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47282 * 300.00016 * 1 2 3 28 28 H 1.09009 * 109.47370 * 59.99575 * 1 2 3 29 29 H 1.08002 * 120.01585 * 359.97189 * 4 3 2 30 30 H 1.08002 * 119.98309 * 180.27304 * 5 4 3 31 31 H 1.07999 * 119.98684 * 180.02562 * 8 6 5 32 32 H 1.08998 * 109.46745 * 30.02286 * 10 9 8 33 33 H 1.08997 * 109.47207 * 150.02244 * 10 9 8 34 34 H 0.97006 * 119.99386 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.47340 * 214.82344 * 23 14 11 36 36 H 1.09000 * 109.46695 * 334.82290 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3751 -0.0056 5 6 1.9196 3.6052 0.0007 6 6 3.3024 3.6770 0.0007 7 9 3.9157 4.8807 0.0017 8 6 4.0571 2.5164 0.0001 9 6 3.4311 1.2846 0.0001 10 6 4.2528 0.0213 0.0000 11 16 4.5831 -0.4850 -1.7103 12 8 3.3849 -0.9111 -2.3444 13 8 5.4587 0.4379 -2.3433 14 7 5.4832 -1.8674 -1.5655 15 6 6.8491 -1.7920 -1.5052 16 1 7.3724 -1.0244 -2.0562 17 6 7.5613 -2.7021 -0.7361 18 7 8.8251 -2.9478 -1.0095 19 14 6.7260 -3.5779 0.6868 20 1 6.2321 -4.9022 0.2315 21 1 7.6994 -3.7659 1.7923 22 1 5.5824 -2.7617 1.1677 23 6 4.8181 -3.1713 -1.5018 24 6 4.7654 -3.7616 -2.8491 25 7 4.7223 -4.2162 -3.8909 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.2127 2.3195 -0.0105 30 1 1.3320 4.5114 0.0008 31 1 5.1355 2.5738 0.0006 32 1 5.1968 0.2020 0.5142 33 1 3.7048 -0.7686 0.5134 34 1 9.3227 -3.5840 -0.4722 35 1 5.3756 -3.8314 -0.8374 36 1 3.8047 -3.0439 -1.1210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881848362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:57 Heat of formation + Delta-G solvation = -75.127485 kcal Electronic energy + Delta-G solvation = -26203.831434 eV Core-core repulsion = 22117.630826 eV Total energy + Delta-G solvation = -4086.200608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.77809 -40.22793 -37.30237 -37.05973 -35.97965 -35.03380 -34.76907 -32.93261 -32.38445 -29.87274 -27.83528 -27.68559 -26.83984 -24.40565 -22.42697 -21.83341 -18.75644 -18.51983 -18.06519 -17.16808 -17.15540 -16.99377 -16.41416 -15.98864 -15.78101 -15.36401 -15.20070 -14.72492 -14.53425 -14.47703 -13.78332 -13.45948 -13.36306 -13.28889 -12.96268 -12.79572 -12.61687 -12.46628 -12.03568 -11.95705 -11.82208 -11.67891 -11.28525 -11.09295 -11.03134 -10.97016 -10.91434 -10.89204 -10.47925 -10.40947 -10.24450 -9.42297 -8.97067 -8.58112 -8.01334 -6.91257 -4.34407 0.82365 1.16535 1.40389 2.76238 2.93313 2.96252 3.15144 3.20812 3.39992 3.50148 3.73918 3.88535 4.24327 4.41307 4.48683 4.60766 4.62403 4.86946 4.96252 5.03021 5.07810 5.11208 5.21252 5.39889 5.40654 5.47377 5.55261 5.68410 5.72536 6.01809 6.06558 6.18492 6.26713 6.45499 6.68526 7.15679 7.28124 8.00453 8.15396 8.57862 8.60731 10.14840 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.004918 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.592360 B = 5692.253334 C = 6343.556894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.123 3.877 4 C -0.181 4.181 5 C -0.120 4.120 6 C 0.064 3.936 7 F -0.140 7.140 8 C -0.111 4.111 9 C -0.070 4.070 10 C -0.610 4.610 11 S 2.484 3.516 12 O -0.981 6.981 13 O -0.958 6.958 14 N -0.826 5.826 15 C -0.259 4.259 16 H 0.132 0.868 17 C 0.063 3.937 18 N -0.809 5.809 19 Si 0.864 3.136 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.248 1.248 23 C 0.208 3.792 24 C 0.219 3.781 25 N -0.438 5.438 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.871 5.437 9.242 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.076 3.924 4 C -0.200 4.200 5 C -0.140 4.140 6 C 0.044 3.956 7 F -0.119 7.119 8 C -0.130 4.130 9 C -0.072 4.072 10 C -0.727 4.727 11 S 2.586 3.414 12 O -0.970 6.970 13 O -0.948 6.948 14 N -0.650 5.650 15 C -0.407 4.407 16 H 0.150 0.850 17 C -0.154 4.154 18 N -0.444 5.444 19 Si 0.689 3.311 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.172 1.172 23 C 0.079 3.921 24 C -0.101 4.101 25 N -0.117 5.117 26 H 0.121 0.879 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.188 5.112 6.969 15.768 hybrid contribution -0.252 0.085 2.004 2.022 sum -13.440 5.196 8.973 16.975 Atomic orbital electron populations 1.23107 0.78393 1.04330 1.01115 1.86158 1.21275 1.25778 1.88031 1.18848 0.91574 0.84931 0.97027 1.21025 1.00335 0.91170 1.07458 1.20876 0.92619 0.98628 1.01834 1.17461 0.90745 0.80528 1.06838 1.91483 1.83358 1.42731 1.94333 1.21046 1.01555 0.89911 1.00513 1.18384 0.90178 0.93925 1.04726 1.30059 1.06827 1.02066 1.33764 1.13188 0.73582 0.74883 0.79764 1.93408 1.49073 1.80304 1.74249 1.93425 1.64284 1.63906 1.73140 1.53989 1.14826 1.14624 1.81534 1.19514 0.77931 1.18281 1.24949 0.85049 1.25798 0.95357 0.97066 0.97152 1.69831 1.08954 1.29699 1.35934 0.87117 0.80925 0.80459 0.82561 1.18758 1.20154 1.17176 1.18836 0.99699 0.86859 0.86751 1.29560 0.92126 0.93044 0.95367 1.81073 1.09560 1.09802 1.11289 0.87910 0.92804 0.92430 0.84272 0.84454 0.83163 0.84775 0.85243 0.90314 0.88471 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.32 9.54 -19.56 -0.19 -4.50 16 3 C 0.12 1.85 6.66 -39.23 -0.26 1.59 16 4 C -0.18 -2.22 9.04 -39.44 -0.36 -2.57 16 5 C -0.12 -1.47 10.02 -39.53 -0.40 -1.87 16 6 C 0.06 0.92 7.30 -39.42 -0.29 0.64 16 7 F -0.14 -2.04 17.27 2.25 0.04 -2.00 16 8 C -0.11 -1.76 9.68 -39.53 -0.38 -2.14 16 9 C -0.07 -1.16 5.15 -104.48 -0.54 -1.70 16 10 C -0.61 -10.41 6.08 36.01 0.22 -10.20 16 11 S 2.48 52.71 5.31 -107.50 -0.57 52.14 16 12 O -0.98 -22.02 16.99 -57.54 -0.98 -23.00 16 13 O -0.96 -23.46 16.85 -57.54 -0.97 -24.43 16 14 N -0.83 -17.60 2.44 -62.77 -0.15 -17.75 16 15 C -0.26 -6.11 9.55 -15.06 -0.14 -6.25 16 16 H 0.13 3.44 7.44 -52.48 -0.39 3.05 16 17 C 0.06 1.43 5.32 -17.43 -0.09 1.34 16 18 N -0.81 -19.65 13.97 55.49 0.78 -18.88 16 19 Si 0.86 16.01 24.94 -169.99 -4.24 11.77 16 20 H -0.26 -4.53 6.68 56.52 0.38 -4.15 16 21 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.25 -4.11 7.11 56.52 0.40 -3.70 16 23 C 0.21 3.87 4.70 -6.83 -0.03 3.84 16 24 C 0.22 4.59 15.73 -20.71 -0.33 4.26 16 25 N -0.44 -9.84 18.55 42.21 0.78 -9.05 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 28 H 0.06 0.50 7.65 -51.92 -0.40 0.10 16 29 H 0.14 1.23 6.30 -52.49 -0.33 0.90 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.13 2.10 8.09 -51.92 -0.42 1.68 16 33 H 0.13 1.97 7.53 -51.93 -0.39 1.58 16 34 H 0.29 6.31 8.31 -40.82 -0.34 5.98 16 35 H 0.10 1.71 2.63 -51.93 -0.14 1.57 16 36 H 0.12 1.73 7.61 -51.93 -0.40 1.34 16 LS Contribution 333.26 15.07 5.02 5.02 Total: -1.00 -30.53 333.26 -5.37 -35.90 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -3.29 Total: 6.61 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.61 Total: -11.82 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 1.40 Total: -45.68 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -2.13 Total: -51.94 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 16.01 SS G_CDS: -4.24 Total: 11.77 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.57 Total: 52.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.53 -5.37 -35.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881848362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.223 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds