Wall clock time and date at job start Tue Mar 31 2020 15:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 116.99882 * 2 1 4 4 C 1.38728 * 120.03195 * 359.73139 * 3 2 1 5 5 C 1.38128 * 119.97039 * 179.69584 * 4 3 2 6 6 C 1.38474 * 120.03151 * 0.57267 * 5 4 3 7 7 F 1.35093 * 119.97216 * 179.74251 * 6 5 4 8 8 C 1.38439 * 120.05811 * 359.72441 * 6 5 4 9 9 C 1.38170 * 120.02909 * 359.97438 * 8 6 5 10 10 C 1.50704 * 120.01629 * 180.02562 * 9 8 6 11 11 S 1.81402 * 109.46795 * 270.02310 * 10 9 8 12 12 O 1.42100 * 110.54266 * 291.62190 * 11 10 9 13 13 O 1.42094 * 110.54354 * 68.37569 * 11 10 9 14 14 N 1.65600 * 104.44761 * 179.97438 * 11 10 9 15 15 C 1.36936 * 120.00402 * 270.00388 * 14 11 10 16 16 H 1.08010 * 119.99223 * 326.38650 * 15 14 11 17 17 C 1.38812 * 120.00664 * 146.38800 * 15 14 11 18 18 N 1.31616 * 119.99796 * 156.61250 * 17 15 14 19 19 Si 1.86798 * 119.99806 * 336.61483 * 17 15 14 20 20 H 1.48496 * 109.47065 * 95.44610 * 19 17 15 21 21 H 1.48493 * 109.47134 * 215.44749 * 19 17 15 22 22 H 1.48504 * 109.47284 * 335.44752 * 19 17 15 23 23 C 1.46504 * 120.00140 * 89.99767 * 14 11 10 24 24 C 1.47195 * 109.47239 * 94.82084 * 23 14 11 25 25 N 6.61521 * 119.85674 * 222.70194 * 2 1 3 26 26 H 1.09002 * 109.47466 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47282 * 300.00016 * 1 2 3 28 28 H 1.09009 * 109.47370 * 59.99575 * 1 2 3 29 29 H 1.08002 * 120.01585 * 359.97189 * 4 3 2 30 30 H 1.08002 * 119.98309 * 180.27304 * 5 4 3 31 31 H 1.07999 * 119.98684 * 180.02562 * 8 6 5 32 32 H 1.08998 * 109.46745 * 30.02286 * 10 9 8 33 33 H 1.08997 * 109.47207 * 150.02244 * 10 9 8 34 34 H 0.97006 * 119.99386 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.47340 * 214.82344 * 23 14 11 36 36 H 1.09000 * 109.46695 * 334.82290 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3751 -0.0056 5 6 1.9196 3.6052 0.0007 6 6 3.3024 3.6770 0.0007 7 9 3.9157 4.8807 0.0017 8 6 4.0571 2.5164 0.0001 9 6 3.4311 1.2846 0.0001 10 6 4.2528 0.0213 0.0000 11 16 4.5831 -0.4850 -1.7103 12 8 3.3849 -0.9111 -2.3444 13 8 5.4587 0.4379 -2.3433 14 7 5.4832 -1.8674 -1.5655 15 6 6.8491 -1.7920 -1.5052 16 1 7.3724 -1.0244 -2.0562 17 6 7.5613 -2.7021 -0.7361 18 7 8.8251 -2.9478 -1.0095 19 14 6.7260 -3.5779 0.6868 20 1 6.2321 -4.9022 0.2315 21 1 7.6994 -3.7659 1.7923 22 1 5.5824 -2.7617 1.1677 23 6 4.8181 -3.1713 -1.5018 24 6 4.7654 -3.7616 -2.8491 25 7 4.7223 -4.2162 -3.8909 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.2127 2.3195 -0.0105 30 1 1.3320 4.5114 0.0008 31 1 5.1355 2.5738 0.0006 32 1 5.1968 0.2020 0.5142 33 1 3.7048 -0.7686 0.5134 34 1 9.3227 -3.5840 -0.4722 35 1 5.3756 -3.8314 -0.8374 36 1 3.8047 -3.0439 -1.1210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881848362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:56 Heat of formation + Delta-G solvation = -97.321050 kcal Electronic energy + Delta-G solvation = -26204.793819 eV Core-core repulsion = 22117.630826 eV Total energy + Delta-G solvation = -4087.162993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.87047 -41.25541 -38.68429 -38.30739 -37.86811 -36.74203 -36.65334 -34.11565 -34.01236 -30.91921 -29.38756 -28.72764 -27.85571 -26.10462 -23.46859 -22.96687 -20.39940 -20.20118 -19.09418 -18.86456 -18.34848 -18.11273 -17.89669 -17.40407 -17.16152 -16.62273 -16.35471 -16.23480 -15.68909 -15.49780 -15.34952 -14.91105 -14.79767 -14.56019 -14.33688 -14.26089 -13.78114 -13.70002 -13.48905 -13.33682 -13.19982 -12.95793 -12.87527 -12.78029 -12.73829 -12.61690 -12.11507 -12.10253 -11.84870 -11.80315 -11.63621 -10.97654 -10.37701 -10.01412 -9.11634 -8.52450 -6.14041 -0.68379 0.08645 0.15961 1.30373 1.42162 1.53491 1.56060 1.78587 2.20726 2.25266 2.29697 2.42564 2.78639 2.94538 3.13920 3.27257 3.36247 3.48169 3.67904 3.96737 4.01501 4.07944 4.13653 4.25105 4.35039 4.45520 4.49944 4.67674 4.81021 4.86126 4.91738 5.01207 5.03845 5.14286 5.55242 5.63196 6.20531 6.33074 6.51757 6.88742 6.96296 8.59974 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.004918 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.592360 B = 5692.253334 C = 6343.556894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.321 6.321 3 C 0.122 3.878 4 C -0.174 4.174 5 C -0.100 4.100 6 C 0.044 3.956 7 F -0.145 7.145 8 C -0.124 4.124 9 C -0.111 4.111 10 C -0.579 4.579 11 S 2.533 3.467 12 O -0.987 6.987 13 O -0.998 6.998 14 N -0.847 5.847 15 C -0.309 4.309 16 H 0.076 0.924 17 C 0.024 3.976 18 N -0.882 5.882 19 Si 0.909 3.091 20 H -0.240 1.240 21 H -0.282 1.282 22 H -0.205 1.205 23 C 0.195 3.805 24 C 0.225 3.775 25 N -0.477 5.477 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.180 0.820 30 H 0.174 0.826 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.286 0.714 35 H 0.114 0.886 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.989 6.517 11.897 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.192 4.192 5 C -0.119 4.119 6 C 0.025 3.975 7 F -0.124 7.124 8 C -0.144 4.144 9 C -0.114 4.114 10 C -0.705 4.705 11 S 2.637 3.363 12 O -0.977 6.977 13 O -0.988 6.988 14 N -0.673 5.673 15 C -0.448 4.448 16 H 0.093 0.907 17 C -0.186 4.186 18 N -0.518 5.518 19 Si 0.729 3.271 20 H -0.166 1.166 21 H -0.209 1.209 22 H -0.126 1.126 23 C 0.066 3.934 24 C -0.094 4.094 25 N -0.156 5.156 26 H 0.138 0.862 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.198 0.802 30 H 0.192 0.808 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.181 0.819 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.182 6.094 9.550 21.422 hybrid contribution 0.876 0.125 1.157 1.457 sum -17.306 6.219 10.708 21.280 Atomic orbital electron populations 1.23518 0.75805 1.06206 1.02836 1.86116 1.24003 1.25551 1.87715 1.19044 0.91175 0.86327 0.96018 1.21484 1.02244 0.89927 1.05560 1.21345 0.91678 1.00300 0.98583 1.17675 0.91866 0.79988 1.07975 1.91473 1.83652 1.42773 1.94472 1.21158 1.01749 0.90713 1.00751 1.18352 0.91265 0.93183 1.08552 1.29605 1.09011 1.04226 1.27620 1.09425 0.72640 0.73936 0.80310 1.93435 1.48540 1.80706 1.75052 1.93423 1.65718 1.64776 1.74918 1.53394 1.14106 1.15512 1.84267 1.18759 0.79068 1.19062 1.27930 0.90675 1.26390 0.95642 0.97403 0.99128 1.69958 1.11499 1.32409 1.37948 0.86410 0.81237 0.80766 0.78667 1.16553 1.20874 1.12644 1.19516 1.02157 0.86013 0.85669 1.30287 0.90967 0.92260 0.95912 1.81059 1.11001 1.11016 1.12570 0.86249 0.90121 0.91564 0.80237 0.80844 0.83764 0.83108 0.81947 0.90397 0.86951 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.32 -7.53 9.54 -92.90 -0.89 -8.42 16 3 C 0.12 3.09 6.66 22.49 0.15 3.24 16 4 C -0.17 -3.26 9.04 22.36 0.20 -3.06 16 5 C -0.10 -1.95 10.02 22.30 0.22 -1.73 16 6 C 0.04 1.16 7.30 22.37 0.16 1.32 16 7 F -0.14 -3.92 17.27 44.97 0.78 -3.14 16 8 C -0.12 -3.69 9.68 22.30 0.22 -3.47 16 9 C -0.11 -3.32 5.15 -19.77 -0.10 -3.42 16 10 C -0.58 -17.86 6.08 71.24 0.43 -17.42 16 11 S 2.53 104.57 5.31 -56.49 -0.30 104.27 16 12 O -0.99 -41.98 16.99 -127.65 -2.17 -44.14 16 13 O -1.00 -50.13 16.85 -127.65 -2.15 -52.28 16 14 N -0.85 -36.02 2.44 -352.51 -0.86 -36.88 16 15 C -0.31 -15.47 9.55 84.03 0.80 -14.67 16 16 H 0.08 4.42 7.44 -2.91 -0.02 4.40 16 17 C 0.02 1.15 5.32 84.86 0.45 1.60 16 18 N -0.88 -46.61 13.97 21.65 0.30 -46.31 16 19 Si 0.91 31.92 24.94 68.60 1.71 33.63 16 20 H -0.24 -7.55 6.68 99.48 0.66 -6.89 16 21 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.21 -5.71 7.11 99.48 0.71 -5.00 16 23 C 0.20 6.91 4.70 84.57 0.40 7.31 16 24 C 0.23 9.39 15.73 89.42 1.41 10.79 16 25 N -0.48 -21.70 18.55 20.02 0.37 -21.32 16 26 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 0.64 7.67 -2.39 -0.02 0.62 16 28 H 0.07 0.76 7.65 -2.38 -0.02 0.74 16 29 H 0.18 1.87 6.30 -2.91 -0.02 1.86 16 30 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.15 4.31 8.09 -2.39 -0.02 4.29 16 33 H 0.16 4.05 7.53 -2.39 -0.02 4.03 16 34 H 0.29 13.77 8.31 -92.70 -0.77 13.00 16 35 H 0.11 3.70 2.63 -2.39 -0.01 3.69 16 36 H 0.17 4.14 7.61 -2.39 -0.02 4.12 16 Total: -1.00 -73.30 333.26 3.35 -69.94 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.10 Total: 22.92 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 5.46 Total: -18.27 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -0.19 Total: -104.51 kcal Atomic # 8 Polarization: -99.64 SS G_CDS: -5.21 Total: -104.85 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 31.92 SS G_CDS: 1.71 Total: 33.63 kcal Atomic # 16 Polarization: 104.57 SS G_CDS: -0.30 Total: 104.27 kcal Total: -73.30 3.35 -69.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881848362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.377 kcal (2) G-P(sol) polarization free energy of solvation -73.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds