Wall clock time and date at job start Tue Mar 31 2020 15:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00305 * 2 1 4 4 H 1.48503 * 109.47216 * 240.00674 * 3 2 1 5 5 H 1.48505 * 109.46846 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47238 * 120.00468 * 3 2 1 7 7 C 1.37878 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00302 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99930 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.66972 * 61.78662 * 9 7 2 11 11 C 1.54888 * 110.75894 * 298.55149 * 9 7 2 12 12 C 1.54261 * 104.19672 * 203.55764 * 11 9 7 13 13 C 1.53876 * 106.59990 * 23.60631 * 12 11 9 14 14 H 1.08998 * 110.03319 * 240.71542 * 13 12 11 15 15 N 1.46504 * 110.03266 * 119.28382 * 13 12 11 16 16 C 1.34774 * 119.99597 * 86.45674 * 15 13 12 17 17 O 1.21584 * 120.00528 * 359.97438 * 16 15 13 18 18 N 1.34782 * 119.99656 * 180.02562 * 16 15 13 19 19 C 1.46502 * 119.99818 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47157 * 179.97438 * 19 18 16 21 21 C 1.33410 * 122.54462 * 259.71605 * 20 19 18 22 22 S 1.75881 * 109.60827 * 179.86874 * 21 20 19 23 23 C 1.75887 * 90.97955 * 0.32487 * 22 21 20 24 24 C 1.33439 * 109.59638 * 359.81641 * 23 22 21 25 25 Cl 1.73600 * 122.54454 * 180.02562 * 24 23 22 26 26 C 1.54267 * 106.59870 * 0.02562 * 13 12 11 27 27 H 0.97002 * 119.99698 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.48622 * 84.87547 * 11 9 7 29 29 H 1.08999 * 110.48451 * 322.23359 * 11 9 7 30 30 H 1.08998 * 110.03492 * 264.32506 * 12 11 9 31 31 H 1.08994 * 110.03470 * 142.89082 * 12 11 9 32 32 H 0.96997 * 120.00453 * 266.45882 * 15 13 12 33 33 H 0.96997 * 120.00394 * 359.97438 * 18 16 15 34 34 H 1.09004 * 109.46950 * 299.99998 * 19 18 16 35 35 H 1.08998 * 109.47486 * 59.99621 * 19 18 16 36 36 H 1.08000 * 125.18955 * 359.97438 * 21 20 19 37 37 H 1.07995 * 125.19895 * 179.85062 * 23 22 21 38 38 H 1.09004 * 110.48597 * 95.06674 * 26 13 12 39 39 H 1.08994 * 110.48679 * 217.71200 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6407 -2.5911 -0.8990 11 6 0.3775 -2.6288 1.2720 12 6 0.1789 -4.1491 1.4413 13 6 1.3520 -4.8294 0.7140 14 1 0.9761 -5.4649 -0.0878 15 7 2.1355 -5.6263 1.6613 16 6 1.7781 -6.8979 1.9293 17 8 0.8053 -7.3835 1.3852 18 7 2.4986 -7.6308 2.8012 19 6 2.1098 -9.0129 3.0929 20 6 3.0716 -9.6054 4.0904 21 6 4.0688 -10.4158 3.7318 22 16 4.9763 -10.9018 5.1579 23 6 3.9136 -9.9570 6.1931 24 6 2.9839 -9.3545 5.4493 25 17 1.7582 -8.3331 6.1334 26 6 2.2228 -3.6986 0.1286 27 1 -0.4850 0.8401 0.0004 28 1 -0.5822 -2.1323 1.1281 29 1 0.8973 -2.2135 2.1353 30 1 -0.7662 -4.4546 0.9924 31 1 0.1926 -4.4120 2.4990 32 1 2.9114 -5.2388 2.0957 33 1 3.2746 -7.2434 3.2355 34 1 1.1017 -9.0270 3.5071 35 1 2.1333 -9.5986 2.1740 36 1 4.2865 -10.7248 2.7201 37 1 4.0007 -9.8765 7.2665 38 1 3.0405 -3.4564 0.8075 39 1 2.6097 -3.9827 -0.8500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884387259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:35 Heat of formation + Delta-G solvation = -14.652434 kcal Electronic energy + Delta-G solvation = -22576.800843 eV Core-core repulsion = 19057.392100 eV Total energy + Delta-G solvation = -3519.408743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.00321 -38.91446 -37.15321 -36.48481 -34.25971 -33.56702 -31.90880 -30.36809 -28.11807 -27.51571 -26.19394 -23.85629 -23.35909 -20.93741 -19.63695 -19.60717 -19.11555 -18.50582 -17.77197 -16.64891 -16.16584 -15.73426 -15.26669 -14.68356 -14.58955 -14.24738 -14.06546 -13.87610 -13.77773 -13.45684 -12.85143 -12.60025 -12.53299 -12.27735 -11.78920 -11.72934 -11.44655 -11.18381 -11.06462 -10.94153 -10.87812 -10.58425 -10.28900 -9.95251 -9.82749 -9.46986 -9.33676 -9.19445 -9.09718 -8.85815 -8.77462 -8.42182 -8.32812 -5.98333 -4.01934 0.33227 0.83237 1.22040 1.81238 2.20458 3.08542 3.32570 3.37836 3.39656 3.48921 4.24031 4.44471 4.46130 4.55817 4.89369 5.00136 5.27142 5.33765 5.38965 5.59753 5.67308 5.74300 5.81214 5.90900 6.38884 6.42985 6.46797 6.64146 6.72826 6.80859 6.95291 7.02548 7.12507 7.33044 7.43808 7.75522 7.92351 8.05973 8.27480 8.45453 8.87544 8.99941 9.61975 11.10709 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.002271 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.934180 B =12324.910996 C =12400.210591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.157 3.843 14 H 0.079 0.921 15 N -0.733 5.733 16 C 0.703 3.297 17 O -0.594 6.594 18 N -0.746 5.746 19 C 0.202 3.798 20 C -0.118 4.118 21 C -0.182 4.182 22 S 0.149 5.851 23 C -0.214 4.214 24 C -0.037 4.037 25 Cl -0.037 7.037 26 C -0.121 4.121 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.393 0.607 33 H 0.395 0.605 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.177 0.823 37 H 0.176 0.824 38 H 0.060 0.940 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.842 -22.689 12.548 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.053 3.947 14 H 0.097 0.903 15 N -0.386 5.386 16 C 0.403 3.597 17 O -0.472 6.472 18 N -0.403 5.403 19 C 0.075 3.925 20 C -0.131 4.131 21 C -0.319 4.319 22 S 0.412 5.588 23 C -0.350 4.350 24 C -0.077 4.077 25 Cl -0.009 7.009 26 C -0.159 4.159 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.194 0.806 37 H 0.193 0.807 38 H 0.078 0.922 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.918 -23.850 12.344 28.628 hybrid contribution -0.101 2.225 0.450 2.272 sum 9.816 -21.624 12.794 26.975 Atomic orbital electron populations 1.69952 1.05860 1.26521 1.50309 1.24973 0.94829 0.98968 0.95127 0.86707 0.79616 0.83402 0.78519 1.20335 1.21374 1.20378 1.21055 0.92685 0.90475 1.51081 0.92751 1.19546 0.92027 0.90940 0.94172 0.95007 1.22302 1.01589 0.90493 0.99457 1.22663 0.97188 0.98664 0.98873 1.21729 0.91724 0.91349 0.89909 0.90300 1.45532 1.33265 1.11481 1.48352 1.15976 0.82627 0.81343 0.79756 1.90904 1.28861 1.71935 1.55531 1.45055 1.33437 1.13515 1.48290 1.19630 0.95756 0.81402 0.95735 1.18740 0.99554 1.01717 0.93095 1.25617 0.99357 1.03622 1.03306 1.84462 1.30457 1.47415 0.96454 1.25585 1.00164 1.04779 1.04505 1.19768 0.95321 0.99937 0.92660 1.98412 1.52465 1.65793 1.84215 1.22760 0.98724 0.95502 0.98906 0.93019 0.91291 0.93608 0.92650 0.93261 0.77376 0.77201 0.90281 0.90506 0.80551 0.80684 0.92153 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 12.02 55.43 0.67 -24.75 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.85 8.55 -34.44 -0.29 -14.14 16 8 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 9 C 0.05 1.27 2.81 -89.76 -0.25 1.02 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.34 5.57 -25.08 -0.14 -2.48 16 12 C -0.13 -2.72 6.59 -25.61 -0.17 -2.89 16 13 C 0.16 2.92 3.22 -66.81 -0.22 2.70 16 14 H 0.08 1.55 7.61 -51.93 -0.40 1.16 16 15 N -0.73 -11.33 5.00 -57.58 -0.29 -11.62 16 16 C 0.70 11.11 8.55 -86.92 -0.74 10.37 16 17 O -0.59 -11.78 16.02 5.29 0.08 -11.69 16 18 N -0.75 -8.67 5.55 -66.41 -0.37 -9.04 16 19 C 0.20 2.11 5.50 -5.19 -0.03 2.08 16 20 C -0.12 -0.99 5.17 -106.23 -0.55 -1.54 16 21 C -0.18 -1.19 10.95 29.04 0.32 -0.87 16 22 S 0.15 0.83 23.34 -107.50 -2.51 -1.68 16 23 C -0.21 -1.44 11.08 29.05 0.32 -1.12 16 24 C -0.04 -0.32 6.26 -41.17 -0.26 -0.58 16 25 Cl -0.04 -0.37 28.23 -51.86 -1.46 -1.83 16 26 C -0.12 -2.39 5.95 -25.06 -0.15 -2.54 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.07 1.77 7.37 -51.93 -0.38 1.39 16 29 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 32 H 0.39 5.12 8.35 -40.82 -0.34 4.78 16 33 H 0.39 3.78 8.48 -40.82 -0.35 3.44 16 34 H 0.08 0.94 7.75 -51.93 -0.40 0.54 16 35 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -31.14 354.41 -10.98 -42.12 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.17 Total: 5.43 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.25 Total: -8.36 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.01 Total: -45.41 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.46 Total: -1.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.14 -10.98 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884387259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.466 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds