Wall clock time and date at job start Tue Mar 31 2020 15:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00305 * 2 1 4 4 H 1.48503 * 109.47216 * 240.00674 * 3 2 1 5 5 H 1.48505 * 109.46846 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47238 * 120.00468 * 3 2 1 7 7 C 1.37878 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00302 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99930 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.66972 * 61.78662 * 9 7 2 11 11 C 1.54888 * 110.75894 * 298.55149 * 9 7 2 12 12 C 1.54261 * 104.19672 * 203.55764 * 11 9 7 13 13 C 1.53876 * 106.59990 * 23.60631 * 12 11 9 14 14 H 1.08998 * 110.03319 * 240.71542 * 13 12 11 15 15 N 1.46504 * 110.03266 * 119.28382 * 13 12 11 16 16 C 1.34774 * 119.99597 * 86.45674 * 15 13 12 17 17 O 1.21584 * 120.00528 * 359.97438 * 16 15 13 18 18 N 1.34782 * 119.99656 * 180.02562 * 16 15 13 19 19 C 1.46502 * 119.99818 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47157 * 179.97438 * 19 18 16 21 21 C 1.33410 * 122.54462 * 259.71605 * 20 19 18 22 22 S 1.75881 * 109.60827 * 179.86874 * 21 20 19 23 23 C 1.75887 * 90.97955 * 0.32487 * 22 21 20 24 24 C 1.33439 * 109.59638 * 359.81641 * 23 22 21 25 25 Cl 1.73600 * 122.54454 * 180.02562 * 24 23 22 26 26 C 1.54267 * 106.59870 * 0.02562 * 13 12 11 27 27 H 0.97002 * 119.99698 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.48622 * 84.87547 * 11 9 7 29 29 H 1.08999 * 110.48451 * 322.23359 * 11 9 7 30 30 H 1.08998 * 110.03492 * 264.32506 * 12 11 9 31 31 H 1.08994 * 110.03470 * 142.89082 * 12 11 9 32 32 H 0.96997 * 120.00453 * 266.45882 * 15 13 12 33 33 H 0.96997 * 120.00394 * 359.97438 * 18 16 15 34 34 H 1.09004 * 109.46950 * 299.99998 * 19 18 16 35 35 H 1.08998 * 109.47486 * 59.99621 * 19 18 16 36 36 H 1.08000 * 125.18955 * 359.97438 * 21 20 19 37 37 H 1.07995 * 125.19895 * 179.85062 * 23 22 21 38 38 H 1.09004 * 110.48597 * 95.06674 * 26 13 12 39 39 H 1.08994 * 110.48679 * 217.71200 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6407 -2.5911 -0.8990 11 6 0.3775 -2.6288 1.2720 12 6 0.1789 -4.1491 1.4413 13 6 1.3520 -4.8294 0.7140 14 1 0.9761 -5.4649 -0.0878 15 7 2.1355 -5.6263 1.6613 16 6 1.7781 -6.8979 1.9293 17 8 0.8053 -7.3835 1.3852 18 7 2.4986 -7.6308 2.8012 19 6 2.1098 -9.0129 3.0929 20 6 3.0716 -9.6054 4.0904 21 6 4.0688 -10.4158 3.7318 22 16 4.9763 -10.9018 5.1579 23 6 3.9136 -9.9570 6.1931 24 6 2.9839 -9.3545 5.4493 25 17 1.7582 -8.3331 6.1334 26 6 2.2228 -3.6986 0.1286 27 1 -0.4850 0.8401 0.0004 28 1 -0.5822 -2.1323 1.1281 29 1 0.8973 -2.2135 2.1353 30 1 -0.7662 -4.4546 0.9924 31 1 0.1926 -4.4120 2.4990 32 1 2.9114 -5.2388 2.0957 33 1 3.2746 -7.2434 3.2355 34 1 1.1017 -9.0270 3.5071 35 1 2.1333 -9.5986 2.1740 36 1 4.2865 -10.7248 2.7201 37 1 4.0007 -9.8765 7.2665 38 1 3.0405 -3.4564 0.8075 39 1 2.6097 -3.9827 -0.8500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884387259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:34 Heat of formation + Delta-G solvation = -33.769872 kcal Electronic energy + Delta-G solvation = -22577.629837 eV Core-core repulsion = 19057.392100 eV Total energy + Delta-G solvation = -3520.237738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19685 -39.70949 -38.70386 -37.18362 -35.32238 -35.24805 -33.68943 -31.09194 -29.93193 -28.85592 -27.35540 -25.68090 -24.08090 -22.22194 -21.28276 -20.88707 -20.20720 -19.39107 -18.66286 -18.43399 -17.25955 -16.91278 -16.56954 -16.31073 -15.96969 -15.63054 -15.19751 -14.75695 -14.60173 -14.41560 -14.08038 -13.99426 -13.61255 -13.50123 -13.35904 -12.99336 -12.75065 -12.52177 -12.43603 -12.41581 -12.08803 -12.02806 -11.81679 -11.64343 -11.36783 -11.26553 -11.04419 -10.79214 -10.43498 -10.29919 -9.88833 -9.69050 -9.37442 -8.07489 -6.18006 -0.18973 0.31589 0.70098 1.15024 1.44956 1.45930 1.53357 1.62473 1.98419 2.22656 2.46788 3.23194 3.42844 3.66248 3.85773 3.97434 4.08001 4.24532 4.28900 4.49578 4.63282 4.66678 4.72928 4.81292 4.95688 4.99762 5.06751 5.10504 5.18606 5.19276 5.33397 5.43912 5.47486 5.68576 5.73609 5.95595 6.02451 6.07856 6.39815 6.92551 7.15409 7.49647 7.64938 9.00782 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.002271 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.934180 B =12324.910996 C =12400.210591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.041 3.959 10 H 0.000 1.000 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.172 3.828 14 H 0.070 0.930 15 N -0.724 5.724 16 C 0.703 3.297 17 O -0.635 6.635 18 N -0.727 5.727 19 C 0.204 3.796 20 C -0.133 4.133 21 C -0.178 4.178 22 S 0.200 5.800 23 C -0.216 4.216 24 C -0.055 4.055 25 Cl -0.059 7.059 26 C -0.105 4.105 27 H 0.259 0.741 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.408 0.592 33 H 0.408 0.592 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.195 0.805 37 H 0.190 0.810 38 H 0.074 0.926 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.640 -23.970 13.492 30.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.018 0.982 11 C -0.128 4.128 12 C -0.163 4.163 13 C 0.066 3.934 14 H 0.088 0.912 15 N -0.379 5.379 16 C 0.402 3.598 17 O -0.517 6.517 18 N -0.383 5.383 19 C 0.078 3.922 20 C -0.146 4.146 21 C -0.316 4.316 22 S 0.464 5.536 23 C -0.353 4.353 24 C -0.094 4.094 25 Cl -0.031 7.031 26 C -0.143 4.143 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.244 0.756 33 H 0.243 0.757 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.212 0.788 37 H 0.207 0.793 38 H 0.093 0.907 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.780 -25.152 13.327 31.202 hybrid contribution -0.912 2.518 0.180 2.684 sum 11.869 -22.634 13.508 28.907 Atomic orbital electron populations 1.70101 1.07360 1.27145 1.51412 1.25788 0.95606 1.02512 0.94964 0.85680 0.78339 0.79113 0.78918 1.19574 1.21518 1.19415 1.21458 0.93146 0.91612 1.50441 0.92207 1.19532 0.92852 0.92335 0.93113 0.98199 1.22074 0.99593 0.92454 0.98635 1.22538 0.97851 0.96326 0.99616 1.21312 0.91096 0.91000 0.90001 0.91199 1.45220 1.33405 1.11339 1.47945 1.16080 0.82387 0.81312 0.79977 1.90882 1.30822 1.72757 1.57238 1.44916 1.32948 1.13729 1.46743 1.19598 0.95682 0.80599 0.96361 1.18505 1.00288 1.03263 0.92517 1.25896 0.98533 1.02287 1.04838 1.84381 1.28696 1.45703 0.94803 1.25875 0.99731 1.04087 1.05568 1.19839 0.95734 1.00907 0.92947 1.98402 1.53581 1.66598 1.84494 1.22554 0.98028 0.93724 1.00027 0.93237 0.94436 0.94456 0.93280 0.92377 0.75618 0.75692 0.92105 0.90356 0.78794 0.79256 0.90734 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 12.02 21.45 0.26 -53.69 16 2 C 0.01 0.55 5.33 84.66 0.45 1.00 16 3 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -28.47 8.55 25.60 0.22 -28.25 16 8 H 0.06 3.08 7.78 -2.91 -0.02 3.06 16 9 C 0.04 2.01 2.81 -10.24 -0.03 1.98 16 10 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 11 C -0.09 -4.26 5.57 31.67 0.18 -4.09 16 12 C -0.12 -5.03 6.59 31.32 0.21 -4.82 16 13 C 0.17 6.24 3.22 45.72 0.15 6.39 16 14 H 0.07 2.73 7.61 -2.39 -0.02 2.71 16 15 N -0.72 -21.27 5.00 -454.34 -2.27 -23.54 16 16 C 0.70 21.45 8.55 179.05 1.53 22.98 16 17 O -0.64 -25.04 16.02 -3.98 -0.06 -25.10 16 18 N -0.73 -15.88 5.55 -482.29 -2.68 -18.56 16 19 C 0.20 4.09 5.50 85.63 0.47 4.56 16 20 C -0.13 -1.99 5.17 -20.90 -0.11 -2.10 16 21 C -0.18 -1.84 10.95 66.73 0.73 -1.11 16 22 S 0.20 1.59 23.34 -56.49 -1.32 0.27 16 23 C -0.22 -2.41 11.08 66.73 0.74 -1.67 16 24 C -0.06 -0.85 6.26 21.24 0.13 -0.72 16 25 Cl -0.06 -1.14 28.23 -2.72 -0.08 -1.21 16 26 C -0.11 -4.06 5.95 31.68 0.19 -3.87 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.04 2.00 7.37 -2.39 -0.02 1.98 16 29 H 0.04 1.80 8.04 -2.39 -0.02 1.79 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.23 7.92 -2.39 -0.02 2.21 16 32 H 0.41 9.63 8.35 -92.71 -0.77 8.85 16 33 H 0.41 6.95 8.48 -92.71 -0.79 6.16 16 34 H 0.06 1.46 7.75 -2.38 -0.02 1.44 16 35 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 36 H 0.19 1.24 8.06 -2.91 -0.02 1.21 16 37 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.07 2.67 7.63 -2.38 -0.02 2.65 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.05 354.41 0.27 -67.78 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.47 Total: 18.51 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 4.86 Total: -9.71 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -4.69 Total: -95.79 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.06 Total: -25.10 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.32 Total: 0.27 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.21 kcal Total: -68.05 0.27 -67.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884387259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.011 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds