Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31587 * 122.23144 * 2 1 4 4 C 1.29954 * 117.13946 * 179.97438 * 3 2 1 5 5 N 1.38893 * 125.36502 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99887 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99952 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99871 * 180.02562 * 6 5 4 9 9 H 1.08997 * 110.33735 * 55.69598 * 8 6 5 10 10 C 1.54484 * 110.37298 * 293.44394 * 8 6 5 11 11 C 1.54507 * 104.06470 * 217.19178 * 10 8 6 12 12 H 1.08998 * 110.51249 * 241.21669 * 11 10 8 13 13 C 1.52994 * 110.51005 * 118.64562 * 11 10 8 14 14 C 1.54479 * 104.06326 * 359.97438 * 11 10 8 15 15 O 1.44425 * 110.37195 * 177.94740 * 8 6 5 16 16 S 1.76133 * 109.26968 * 0.02562 * 4 3 2 17 17 C 1.34662 * 122.22991 * 179.97438 * 2 1 3 18 18 S 1.76195 * 125.93067 * 359.97438 * 17 2 1 19 19 C 1.76198 * 100.00011 * 180.02562 * 18 17 2 20 20 H 1.08000 * 119.99841 * 359.97438 * 19 18 17 21 21 C 1.38426 * 119.99851 * 179.97438 * 19 18 17 22 22 N 1.31815 * 120.00417 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99900 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47085 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47310 * 120.00290 * 23 21 19 26 26 H 1.48501 * 109.47237 * 240.00042 * 23 21 19 27 27 H 1.08994 * 109.47258 * 90.02379 * 1 2 3 28 28 H 1.09000 * 109.47251 * 210.02656 * 1 2 3 29 29 H 1.08998 * 109.46987 * 330.02391 * 1 2 3 30 30 H 0.97003 * 120.00079 * 0.02562 * 5 4 3 31 31 H 1.08999 * 110.50891 * 335.83829 * 10 8 6 32 32 H 1.09001 * 110.50659 * 98.41220 * 10 8 6 33 33 H 1.08996 * 109.47302 * 60.00212 * 13 11 10 34 34 H 1.09000 * 109.47460 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.47186 * 299.99924 * 13 11 10 36 36 H 1.09005 * 110.37168 * 142.80885 * 14 11 10 37 37 H 1.08994 * 110.37667 * 265.03630 * 14 11 10 38 38 H 0.96996 * 120.00014 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9978 0.0005 5 7 4.4044 2.0546 0.0011 6 6 5.7298 1.8099 0.0011 7 8 6.1355 0.6669 0.0010 8 6 6.7076 2.9566 0.0023 9 1 6.5150 3.6178 0.8472 10 6 6.6184 3.7409 -1.3256 11 6 8.0812 4.1365 -1.6271 12 1 8.1853 5.2211 -1.6561 13 6 8.5418 3.5195 -2.9491 14 6 8.8812 3.5450 -0.4453 15 8 8.0634 2.4611 0.0506 16 16 3.9346 -0.7099 0.0003 17 6 2.2252 -1.1391 0.0005 18 16 1.5697 -2.7746 0.0019 19 6 3.0666 -3.7041 0.0027 20 1 4.0187 -3.1944 0.0019 21 6 3.0221 -5.0877 0.0044 22 7 1.8600 -5.7098 0.0049 23 14 4.6090 -6.0731 0.0061 24 1 5.7681 -5.1449 0.0046 25 1 4.6599 -6.9275 1.2196 26 1 4.6605 -6.9305 -1.2054 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.0800 2.9687 0.0015 31 1 6.2234 3.1057 -2.1185 32 1 5.9978 4.6287 -1.2038 33 1 7.9047 3.8766 -3.7582 34 1 9.5744 3.8086 -3.1448 35 1 8.4747 2.4334 -2.8862 36 1 9.8438 3.1671 -0.7900 37 1 9.0254 4.2975 0.3299 38 1 1.8289 -6.6793 0.0065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888247759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = -47.605286 kcal Electronic energy + Delta-G solvation = -22787.178073 eV Core-core repulsion = 19268.384093 eV Total energy + Delta-G solvation = -3518.793980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74702 -39.17017 -38.32540 -34.82097 -33.75761 -32.80668 -31.22858 -29.98207 -27.10352 -26.79019 -25.75925 -24.93949 -22.83382 -21.04808 -20.83172 -19.69114 -18.19963 -17.73811 -17.11299 -16.80713 -15.95800 -15.51705 -15.41319 -15.11519 -15.07705 -14.41529 -14.16368 -13.97633 -13.55954 -13.18202 -13.09112 -12.84892 -12.67361 -12.21701 -12.00739 -11.87684 -11.62681 -11.35671 -11.28964 -11.25961 -11.18808 -11.04932 -10.72904 -10.58053 -10.22846 -10.18358 -9.74225 -9.53198 -9.06313 -8.74442 -8.64044 -7.79789 -6.58845 -6.49377 -4.26538 1.38303 1.87977 2.40227 2.49098 2.66831 3.10116 3.10465 3.19994 3.37562 3.60073 3.70641 3.99416 4.03493 4.28538 4.40630 4.58776 4.65840 4.82877 4.83996 5.04940 5.07669 5.14677 5.21381 5.29287 5.33204 5.48081 5.59508 5.62226 5.89232 5.98386 6.12720 6.23727 6.32731 6.46562 6.49202 6.95468 7.17595 7.35246 7.95630 8.06405 8.51421 8.90182 10.46951 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.003553 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.776414 B = 7879.045313 C = 9427.627857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.018 3.982 3 N -0.474 5.474 4 C 0.186 3.814 5 N -0.612 5.612 6 C 0.508 3.492 7 O -0.482 6.482 8 C 0.069 3.931 9 H 0.101 0.899 10 C -0.145 4.145 11 C -0.123 4.123 12 H 0.089 0.911 13 C -0.147 4.147 14 C 0.044 3.956 15 O -0.339 6.339 16 S 0.202 5.798 17 C -0.251 4.251 18 S 0.150 5.850 19 C -0.556 4.556 20 H 0.090 0.910 21 C 0.082 3.918 22 N -0.863 5.863 23 Si 0.924 3.076 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.275 1.275 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 20.138 -2.291 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.124 4.124 3 N -0.195 5.195 4 C -0.184 4.184 5 N -0.263 5.263 6 C 0.292 3.708 7 O -0.354 6.354 8 C 0.007 3.993 9 H 0.118 0.882 10 C -0.183 4.183 11 C -0.142 4.142 12 H 0.107 0.893 13 C -0.204 4.204 14 C -0.032 4.032 15 O -0.257 6.257 16 S 0.446 5.554 17 C -0.487 4.487 18 S 0.400 5.600 19 C -0.704 4.704 20 H 0.107 0.893 21 C -0.129 4.129 22 N -0.496 5.496 23 Si 0.748 3.252 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.251 0.749 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.657 18.274 -2.217 20.342 hybrid contribution 1.081 0.654 -0.038 1.265 sum 9.738 18.928 -2.255 21.405 Atomic orbital electron populations 1.20112 0.88028 1.02113 1.01779 1.19026 0.96684 0.84570 1.12137 1.65803 1.02744 1.32416 1.18571 1.23710 0.89824 0.92820 1.12070 1.42218 1.04067 1.08152 1.71880 1.20398 0.81791 0.91071 0.77585 1.90743 1.76765 1.22047 1.45820 1.22683 0.84535 0.92489 0.99560 0.88174 1.23093 0.97918 1.00686 0.96635 1.22514 0.94044 1.01062 0.96582 0.89313 1.21863 1.01153 1.01770 0.95623 1.23634 0.95388 0.89674 0.94550 1.89342 1.14250 1.36378 1.85742 1.85935 1.01685 0.95366 1.72453 1.28785 1.01304 1.06754 1.11904 1.83057 1.11058 0.84407 1.81459 1.23316 0.93616 0.94053 1.59461 0.89252 1.25026 0.98280 0.96672 0.92897 1.70022 1.24368 1.10250 1.44993 0.85994 0.81392 0.79465 0.78326 1.18717 1.19978 1.19993 0.91888 0.91044 0.91940 0.74895 0.89588 0.89148 0.92199 0.92236 0.91749 0.88353 0.91753 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.01 0.36 -0.70 16 2 C 0.02 0.39 6.73 -83.96 -0.57 -0.18 16 3 N -0.47 -9.47 10.55 -9.78 -0.10 -9.58 16 4 C 0.19 3.60 8.40 -87.19 -0.73 2.87 16 5 N -0.61 -8.86 5.40 -11.78 -0.06 -8.92 16 6 C 0.51 7.58 7.03 -10.99 -0.08 7.50 16 7 O -0.48 -9.56 14.07 -13.66 -0.19 -9.75 16 8 C 0.07 0.71 3.70 -27.11 -0.10 0.61 16 9 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 10 C -0.15 -1.10 6.27 -25.16 -0.16 -1.26 16 11 C -0.12 -0.81 3.72 -89.06 -0.33 -1.14 16 12 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 13 C -0.15 -1.04 8.95 37.15 0.33 -0.71 16 14 C 0.04 0.35 7.18 37.93 0.27 0.62 16 15 O -0.34 -4.27 10.92 -54.44 -0.59 -4.86 16 16 S 0.20 4.55 18.35 -107.50 -1.97 2.58 16 17 C -0.25 -5.84 6.67 29.47 0.20 -5.65 16 18 S 0.15 3.79 20.74 -107.50 -2.23 1.56 16 19 C -0.56 -15.34 9.26 30.80 0.29 -15.05 16 20 H 0.09 2.47 5.97 -52.49 -0.31 2.15 16 21 C 0.08 2.22 5.49 -17.49 -0.10 2.12 16 22 N -0.86 -23.97 13.22 55.47 0.73 -23.24 16 23 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 16 24 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.41 4.32 8.82 -40.82 -0.36 3.96 16 31 H 0.09 0.78 7.46 -51.93 -0.39 0.40 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.70 7.87 -51.93 -0.41 0.29 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.28 7.10 8.32 -40.82 -0.34 6.76 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -33.40 346.64 -9.63 -43.02 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.79 Total: -1.06 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.61 Total: -10.96 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.57 Total: -41.74 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.79 Total: -14.61 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 8.34 SS G_CDS: -4.20 Total: 4.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.40 -9.63 -43.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888247759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.582 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds