Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31587 * 122.23144 * 2 1 4 4 C 1.29954 * 117.13946 * 179.97438 * 3 2 1 5 5 N 1.38893 * 125.36502 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99887 * 180.02562 * 5 4 3 7 7 O 1.21289 * 119.99952 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99871 * 180.02562 * 6 5 4 9 9 H 1.08997 * 110.33735 * 55.69598 * 8 6 5 10 10 C 1.54484 * 110.37298 * 293.44394 * 8 6 5 11 11 C 1.54507 * 104.06470 * 217.19178 * 10 8 6 12 12 H 1.08998 * 110.51249 * 241.21669 * 11 10 8 13 13 C 1.52994 * 110.51005 * 118.64562 * 11 10 8 14 14 C 1.54479 * 104.06326 * 359.97438 * 11 10 8 15 15 O 1.44425 * 110.37195 * 177.94740 * 8 6 5 16 16 S 1.76133 * 109.26968 * 0.02562 * 4 3 2 17 17 C 1.34662 * 122.22991 * 179.97438 * 2 1 3 18 18 S 1.76195 * 125.93067 * 359.97438 * 17 2 1 19 19 C 1.76198 * 100.00011 * 180.02562 * 18 17 2 20 20 H 1.08000 * 119.99841 * 359.97438 * 19 18 17 21 21 C 1.38426 * 119.99851 * 179.97438 * 19 18 17 22 22 N 1.31815 * 120.00417 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99900 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47085 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47310 * 120.00290 * 23 21 19 26 26 H 1.48501 * 109.47237 * 240.00042 * 23 21 19 27 27 H 1.08994 * 109.47258 * 90.02379 * 1 2 3 28 28 H 1.09000 * 109.47251 * 210.02656 * 1 2 3 29 29 H 1.08998 * 109.46987 * 330.02391 * 1 2 3 30 30 H 0.97003 * 120.00079 * 0.02562 * 5 4 3 31 31 H 1.08999 * 110.50891 * 335.83829 * 10 8 6 32 32 H 1.09001 * 110.50659 * 98.41220 * 10 8 6 33 33 H 1.08996 * 109.47302 * 60.00212 * 13 11 10 34 34 H 1.09000 * 109.47460 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.47186 * 299.99924 * 13 11 10 36 36 H 1.09005 * 110.37168 * 142.80885 * 14 11 10 37 37 H 1.08994 * 110.37667 * 265.03630 * 14 11 10 38 38 H 0.96996 * 120.00014 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9978 0.0005 5 7 4.4044 2.0546 0.0011 6 6 5.7298 1.8099 0.0011 7 8 6.1355 0.6669 0.0010 8 6 6.7076 2.9566 0.0023 9 1 6.5150 3.6178 0.8472 10 6 6.6184 3.7409 -1.3256 11 6 8.0812 4.1365 -1.6271 12 1 8.1853 5.2211 -1.6561 13 6 8.5418 3.5195 -2.9491 14 6 8.8812 3.5450 -0.4453 15 8 8.0634 2.4611 0.0506 16 16 3.9346 -0.7099 0.0003 17 6 2.2252 -1.1391 0.0005 18 16 1.5697 -2.7746 0.0019 19 6 3.0666 -3.7041 0.0027 20 1 4.0187 -3.1944 0.0019 21 6 3.0221 -5.0877 0.0044 22 7 1.8600 -5.7098 0.0049 23 14 4.6090 -6.0731 0.0061 24 1 5.7681 -5.1449 0.0046 25 1 4.6599 -6.9275 1.2196 26 1 4.6605 -6.9305 -1.2054 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.0800 2.9687 0.0015 31 1 6.2234 3.1057 -2.1185 32 1 5.9978 4.6287 -1.2038 33 1 7.9047 3.8766 -3.7582 34 1 9.5744 3.8086 -3.1448 35 1 8.4747 2.4334 -2.8862 36 1 9.8438 3.1671 -0.7900 37 1 9.0254 4.2975 0.3299 38 1 1.8289 -6.6793 0.0065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888247759.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = -69.812211 kcal Electronic energy + Delta-G solvation = -22788.141038 eV Core-core repulsion = 19268.384093 eV Total energy + Delta-G solvation = -3519.756944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83991 -40.45413 -39.67509 -36.23657 -34.83201 -34.43287 -32.47669 -31.07887 -28.79392 -27.73383 -27.40952 -26.03600 -24.05956 -22.43712 -21.41998 -21.21147 -19.87140 -19.21344 -18.39296 -17.73905 -17.42305 -17.09216 -16.74855 -16.59139 -16.09892 -15.73521 -15.45888 -15.03912 -14.94628 -14.48618 -14.40702 -13.80744 -13.54068 -13.47700 -13.40971 -13.27709 -13.08607 -12.91969 -12.84861 -12.35733 -12.17635 -12.11611 -12.05231 -11.87215 -11.69414 -11.36916 -11.26635 -10.87640 -10.72492 -10.50426 -10.48652 -9.55929 -8.59488 -8.38523 -6.31468 -0.26460 0.19471 0.80987 1.11021 1.25263 1.30949 1.32212 1.41617 1.59606 1.98394 2.12826 2.79620 2.92708 3.07720 3.19769 3.52961 3.74577 3.81681 3.92518 4.07566 4.20071 4.42689 4.58818 4.65445 4.66940 4.75523 4.82649 4.85667 4.87969 4.96252 5.03041 5.06158 5.10447 5.28699 5.32165 5.46198 5.65986 5.96194 6.01077 6.72212 6.83555 6.85808 8.48561 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.003553 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.776414 B = 7879.045313 C = 9427.627857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.038 3.962 3 N -0.477 5.477 4 C 0.227 3.773 5 N -0.595 5.595 6 C 0.505 3.495 7 O -0.532 6.532 8 C 0.075 3.925 9 H 0.142 0.858 10 C -0.142 4.142 11 C -0.117 4.117 12 H 0.123 0.877 13 C -0.149 4.149 14 C 0.038 3.962 15 O -0.384 6.384 16 S 0.147 5.853 17 C -0.280 4.280 18 S 0.103 5.897 19 C -0.577 4.577 20 H 0.078 0.922 21 C 0.037 3.963 22 N -0.894 5.894 23 Si 0.984 3.016 24 H -0.272 1.272 25 H -0.262 1.262 26 H -0.262 1.262 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.439 0.561 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 23.994 -2.312 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.198 5.198 4 C -0.146 4.146 5 N -0.249 5.249 6 C 0.292 3.708 7 O -0.407 6.407 8 C 0.014 3.986 9 H 0.159 0.841 10 C -0.180 4.180 11 C -0.135 4.135 12 H 0.141 0.859 13 C -0.206 4.206 14 C -0.038 4.038 15 O -0.303 6.303 16 S 0.391 5.609 17 C -0.515 4.515 18 S 0.351 5.649 19 C -0.725 4.725 20 H 0.096 0.904 21 C -0.171 4.171 22 N -0.529 5.529 23 Si 0.805 3.195 24 H -0.196 1.196 25 H -0.186 1.186 26 H -0.186 1.186 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.281 0.719 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.545 22.211 -2.243 24.278 hybrid contribution 0.932 -0.178 -0.049 0.950 sum 10.476 22.033 -2.292 24.504 Atomic orbital electron populations 1.20251 0.85463 1.03225 1.03172 1.19733 0.98476 0.84087 1.08105 1.66031 1.02407 1.31246 1.20158 1.24043 0.90203 0.92777 1.07532 1.42344 1.03480 1.08114 1.70980 1.21604 0.82078 0.91860 0.75252 1.90736 1.77434 1.24725 1.47761 1.22947 0.82543 0.90405 1.02737 0.84077 1.23191 0.99332 1.01318 0.94177 1.22554 0.92864 1.02814 0.95267 0.85857 1.21883 1.02313 0.99788 0.96643 1.23903 0.94926 0.89188 0.95811 1.89309 1.15556 1.39076 1.86368 1.86214 1.02574 0.98627 1.73463 1.28591 1.01408 1.06141 1.15373 1.82827 1.11032 0.86130 1.84893 1.23481 0.93907 0.94904 1.60221 0.90371 1.25852 1.01337 0.97385 0.92477 1.70090 1.25987 1.10736 1.46096 0.85109 0.77179 0.77985 0.79181 1.19641 1.18635 1.18634 0.90230 0.91385 0.89308 0.71905 0.91650 0.85079 0.91592 0.90931 0.94909 0.88444 0.89109 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.07 10.02 71.24 0.71 -1.35 16 2 C 0.04 1.56 6.73 41.77 0.28 1.84 16 3 N -0.48 -18.13 10.55 -184.87 -1.95 -20.08 16 4 C 0.23 8.49 8.40 179.15 1.50 10.00 16 5 N -0.60 -15.76 5.40 -309.58 -1.67 -17.43 16 6 C 0.51 14.33 7.03 87.66 0.62 14.94 16 7 O -0.53 -21.36 14.07 15.31 0.22 -21.14 16 8 C 0.07 1.31 3.70 30.35 0.11 1.43 16 9 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 10 C -0.14 -1.61 6.27 31.61 0.20 -1.41 16 11 C -0.12 -1.10 3.72 -9.78 -0.04 -1.14 16 12 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 13 C -0.15 -1.84 8.95 71.98 0.64 -1.19 16 14 C 0.04 0.48 7.18 72.48 0.52 1.00 16 15 O -0.38 -9.05 10.92 -130.61 -1.43 -10.48 16 16 S 0.15 6.81 18.35 -56.49 -1.04 5.77 16 17 C -0.28 -13.37 6.67 67.00 0.45 -12.92 16 18 S 0.10 5.49 20.74 -56.49 -1.17 4.32 16 19 C -0.58 -33.37 9.26 67.86 0.63 -32.74 16 20 H 0.08 4.57 5.97 -2.91 -0.02 4.55 16 21 C 0.04 2.06 5.49 84.74 0.46 2.52 16 22 N -0.89 -51.26 13.22 21.59 0.29 -50.97 16 23 Si 0.98 44.29 29.55 68.60 2.03 46.32 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 2.35 7.37 -2.39 -0.02 2.34 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.44 7.36 8.82 -92.71 -0.82 6.54 16 31 H 0.06 1.04 7.46 -2.39 -0.02 1.02 16 32 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 1.22 7.87 -2.38 -0.02 1.20 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.28 14.84 8.32 -92.71 -0.77 14.06 16 Total: -1.00 -77.55 346.64 1.65 -75.90 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.29 Total: 6.83 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 6.10 Total: -19.03 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -3.34 Total: -88.48 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.21 Total: -31.62 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 12.29 SS G_CDS: -2.21 Total: 10.08 kcal Total: -77.55 1.65 -75.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888247759.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.087 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds