Wall clock time and date at job start Tue Mar 31 2020 15:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40445 * 126.81399 * 2 1 4 4 C 1.30772 * 106.79205 * 179.97438 * 3 2 1 5 5 Br 1.89102 * 125.54063 * 179.97438 * 4 3 2 6 6 N 1.33303 * 108.92059 * 359.76849 * 4 3 2 7 7 C 1.30841 * 109.81889 * 0.38317 * 6 4 3 8 8 C 1.50704 * 125.94933 * 179.88722 * 7 6 4 9 9 N 1.46896 * 109.47107 * 269.69215 * 8 7 6 10 10 C 1.46900 * 111.00119 * 190.00019 * 9 8 7 11 11 C 1.50699 * 109.46996 * 75.51973 * 10 9 8 12 12 H 1.08002 * 120.00332 * 356.69202 * 11 10 9 13 13 C 1.37877 * 120.00100 * 176.68399 * 11 10 9 14 14 N 1.31515 * 120.00024 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99918 * 0.02562 * 13 11 10 16 16 H 1.48508 * 109.47187 * 89.99752 * 15 13 11 17 17 H 1.48497 * 109.47323 * 209.99411 * 15 13 11 18 18 H 1.48496 * 109.47036 * 329.99603 * 15 13 11 19 19 C 1.46897 * 111.00255 * 66.04685 * 9 8 7 20 20 C 1.52999 * 109.47243 * 195.66684 * 19 9 8 21 21 C 1.52998 * 117.49963 * 244.10541 * 20 19 9 22 22 C 1.52999 * 117.49892 * 175.44669 * 20 19 9 23 23 H 1.08993 * 109.47615 * 270.03274 * 1 2 3 24 24 H 1.09000 * 109.47312 * 30.03597 * 1 2 3 25 25 H 1.09000 * 109.46838 * 150.02854 * 1 2 3 26 26 H 1.09001 * 109.46898 * 149.68804 * 8 7 6 27 27 H 1.08999 * 109.47188 * 29.69060 * 8 7 6 28 28 H 1.08995 * 109.47338 * 195.52138 * 10 9 8 29 29 H 1.09000 * 109.47048 * 315.52754 * 10 9 8 30 30 H 0.97006 * 119.99847 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.47205 * 315.67064 * 19 9 8 32 32 H 1.09005 * 109.47037 * 75.66579 * 19 9 8 33 33 H 1.09000 * 115.55078 * 29.77731 * 20 19 9 34 34 H 1.08997 * 117.50030 * 0.02562 * 21 20 19 35 35 H 1.09003 * 117.49902 * 145.02113 * 21 20 19 36 36 H 1.09001 * 117.49988 * 214.98200 * 22 20 19 37 37 H 1.09003 * 117.50254 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3066 1.1244 0.0000 4 6 3.5352 0.6766 0.0006 5 35 5.0949 1.7460 0.0001 6 7 3.5096 -0.6561 0.0060 7 6 2.2704 -1.0760 0.0007 8 6 1.8240 -2.5154 0.0019 9 7 1.6788 -2.9841 -1.3827 10 6 1.0222 -4.2974 -1.4279 11 6 -0.4530 -4.1306 -1.1688 12 1 -0.8534 -3.1550 -0.9358 13 6 -1.2915 -5.2234 -1.2293 14 7 -2.5789 -5.0777 -1.0036 15 14 -0.5988 -6.9109 -1.6317 16 1 -0.2032 -7.5963 -0.3750 17 1 -1.6323 -7.7164 -2.3305 18 1 0.5896 -6.7617 -2.5094 19 6 2.9793 -3.0221 -2.0648 20 6 2.7601 -3.1289 -3.5752 21 6 3.2543 -4.3977 -4.2729 22 6 3.9969 -3.0745 -4.4742 23 1 -0.3634 0.0006 1.0276 24 1 -0.3634 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5134 26 1 0.8664 -2.5984 0.5159 27 1 2.5665 -3.1257 0.5160 28 1 1.1702 -4.7440 -2.4110 29 1 1.4539 -4.9458 -0.6654 30 1 -3.1687 -5.8467 -1.0458 31 1 3.5335 -2.1104 -1.8416 32 1 3.5464 -3.8860 -1.7180 33 1 1.8445 -2.6721 -3.9509 34 1 3.7352 -5.1566 -3.6558 35 1 2.6640 -4.7755 -5.1077 36 1 3.8949 -2.5822 -5.4413 37 1 4.9669 -2.9630 -3.9895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894004153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:31 Heat of formation + Delta-G solvation = 128.029737 kcal Electronic energy + Delta-G solvation = -20419.330416 eV Core-core repulsion = 17281.221031 eV Total energy + Delta-G solvation = -3138.109386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.08186 -38.00391 -35.78321 -34.07221 -32.73084 -31.88352 -30.90624 -28.38418 -27.83323 -26.44772 -24.07375 -22.12270 -21.56679 -21.26468 -20.29900 -19.65727 -17.10278 -16.69091 -16.17359 -15.52303 -14.90403 -14.74368 -14.51538 -13.91282 -13.74065 -13.57589 -13.27270 -12.86431 -12.48569 -12.39856 -11.89726 -11.76397 -11.55915 -11.28348 -11.13929 -10.93837 -10.77434 -10.76261 -10.57358 -10.07084 -10.01702 -9.90416 -9.75669 -9.50841 -9.37024 -9.23477 -8.68274 -7.67729 -6.17296 -4.15457 0.92211 1.55193 2.53618 2.74113 3.21401 3.30333 3.32323 4.08858 4.28162 4.32692 4.61094 4.71989 5.13552 5.16844 5.23509 5.24772 5.34438 5.43345 5.68141 5.74172 5.78330 5.84567 5.90769 6.01193 6.03482 6.11074 6.22729 6.28307 6.35671 6.60169 6.72015 6.79880 6.80220 7.47296 7.67625 7.76651 7.98524 8.49406 8.86845 9.44595 10.95252 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.003924 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.148833 B = 7133.511578 C = 8326.875984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.353 5.353 3 N -0.290 5.290 4 C 0.214 3.786 5 Br 0.069 6.931 6 N -0.525 5.525 7 C 0.314 3.686 8 C 0.132 3.868 9 N -0.520 5.520 10 C 0.161 3.839 11 C -0.512 4.512 12 H 0.079 0.921 13 C 0.073 3.927 14 N -0.898 5.898 15 Si 0.871 3.129 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.077 3.923 20 C -0.131 4.131 21 C -0.183 4.183 22 C -0.184 4.184 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.042 0.958 29 H -0.011 1.011 30 H 0.265 0.735 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.760 10.299 0.802 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.143 5.143 3 N -0.123 5.123 4 C -0.146 4.146 5 Br 0.148 6.852 6 N -0.256 5.256 7 C 0.036 3.964 8 C 0.001 3.999 9 N -0.245 5.245 10 C 0.036 3.964 11 C -0.551 4.551 12 H 0.097 0.903 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.698 3.302 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.051 4.051 20 C -0.150 4.150 21 C -0.220 4.220 22 C -0.222 4.222 23 H 0.100 0.900 24 H 0.110 0.890 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.007 0.993 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.805 11.445 0.576 17.185 hybrid contribution 0.171 -1.868 0.149 1.882 sum 12.976 9.577 0.725 16.144 Atomic orbital electron populations 1.22244 0.72224 1.06494 1.04216 1.50248 1.08484 1.03140 1.52413 1.78130 0.99969 1.08597 1.25609 1.25342 0.92516 0.91511 1.05264 1.96747 1.26533 1.64024 1.97863 1.70435 1.20436 1.08843 1.25847 1.24554 0.84836 0.93264 0.93727 1.20635 1.02458 0.83584 0.93196 1.61922 1.19745 1.31191 1.11604 1.20293 0.95291 0.83974 0.96856 1.20959 0.89534 0.96551 1.48011 0.90308 1.24849 0.94680 0.98727 0.94725 1.69873 1.03204 1.30907 1.49639 0.86925 0.79326 0.84827 0.79128 1.20278 1.21171 1.18879 1.21785 0.90837 1.00834 0.91655 1.22239 0.98064 1.01103 0.93592 1.23011 1.04116 0.91355 1.03522 1.22934 0.96650 1.01447 1.01150 0.89975 0.89022 0.86467 0.86851 0.91619 0.93990 0.99309 0.92557 0.90179 0.95117 0.87020 0.89257 0.89141 0.89227 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 11.15 59.85 0.67 1.83 16 2 N -0.35 -5.66 4.04 -65.10 -0.26 -5.93 16 3 N -0.29 -4.89 12.70 30.61 0.39 -4.50 16 4 C 0.21 3.52 8.69 -91.71 -0.80 2.72 16 5 Br 0.07 0.88 34.13 -68.01 -2.32 -1.44 16 6 N -0.53 -9.10 10.10 -10.37 -0.10 -9.20 16 7 C 0.31 5.29 6.64 -155.70 -1.03 4.25 16 8 C 0.13 2.24 4.91 -4.98 -0.02 2.22 16 9 N -0.52 -9.77 4.37 -237.52 -1.04 -10.81 16 10 C 0.16 3.50 3.67 -4.98 -0.02 3.48 16 11 C -0.51 -12.92 9.14 -34.44 -0.31 -13.23 16 12 H 0.08 2.09 7.76 -52.49 -0.41 1.69 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -25.47 13.96 55.43 0.77 -24.70 16 15 Si 0.87 20.11 27.54 -169.99 -4.68 15.43 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.26 -5.88 6.45 56.52 0.36 -5.51 16 19 C 0.08 1.32 5.11 -3.83 -0.02 1.30 16 20 C -0.13 -2.14 4.96 -90.62 -0.45 -2.59 16 21 C -0.18 -2.70 9.98 -26.70 -0.27 -2.97 16 22 C -0.18 -2.50 10.25 -26.70 -0.27 -2.78 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.12 1.68 7.55 -51.93 -0.39 1.29 16 26 H 0.11 1.95 6.95 -51.93 -0.36 1.59 16 27 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 28 H 0.04 0.95 5.77 -51.93 -0.30 0.65 16 29 H -0.01 -0.23 7.60 -51.93 -0.39 -0.63 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.08 1.40 6.09 -51.93 -0.32 1.09 16 32 H 0.03 0.52 7.79 -51.93 -0.40 0.12 16 33 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 34 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 330.30 15.07 4.98 4.98 Total: -1.00 -28.75 330.30 -10.02 -38.77 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.12 Total: 1.33 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.63 Total: -3.93 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.24 Total: -55.13 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.68 Total: 15.43 kcal Atomic # 35 Polarization: 0.88 SS G_CDS: -2.32 Total: -1.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.75 -10.02 -38.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894004153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.797 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds