Wall clock time and date at job start Tue Mar 31 2020 15:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40445 * 126.81399 * 2 1 4 4 C 1.30772 * 106.79205 * 179.97438 * 3 2 1 5 5 Br 1.89102 * 125.54063 * 179.97438 * 4 3 2 6 6 N 1.33303 * 108.92059 * 359.76849 * 4 3 2 7 7 C 1.30841 * 109.81889 * 0.38317 * 6 4 3 8 8 C 1.50704 * 125.94933 * 179.88722 * 7 6 4 9 9 N 1.46896 * 109.47107 * 269.69215 * 8 7 6 10 10 C 1.46900 * 111.00119 * 190.00019 * 9 8 7 11 11 C 1.50699 * 109.46996 * 75.51973 * 10 9 8 12 12 H 1.08002 * 120.00332 * 356.69202 * 11 10 9 13 13 C 1.37877 * 120.00100 * 176.68399 * 11 10 9 14 14 N 1.31515 * 120.00024 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99918 * 0.02562 * 13 11 10 16 16 H 1.48508 * 109.47187 * 89.99752 * 15 13 11 17 17 H 1.48497 * 109.47323 * 209.99411 * 15 13 11 18 18 H 1.48496 * 109.47036 * 329.99603 * 15 13 11 19 19 C 1.46897 * 111.00255 * 66.04685 * 9 8 7 20 20 C 1.52999 * 109.47243 * 195.66684 * 19 9 8 21 21 C 1.52998 * 117.49963 * 244.10541 * 20 19 9 22 22 C 1.52999 * 117.49892 * 175.44669 * 20 19 9 23 23 H 1.08993 * 109.47615 * 270.03274 * 1 2 3 24 24 H 1.09000 * 109.47312 * 30.03597 * 1 2 3 25 25 H 1.09000 * 109.46838 * 150.02854 * 1 2 3 26 26 H 1.09001 * 109.46898 * 149.68804 * 8 7 6 27 27 H 1.08999 * 109.47188 * 29.69060 * 8 7 6 28 28 H 1.08995 * 109.47338 * 195.52138 * 10 9 8 29 29 H 1.09000 * 109.47048 * 315.52754 * 10 9 8 30 30 H 0.97006 * 119.99847 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.47205 * 315.67064 * 19 9 8 32 32 H 1.09005 * 109.47037 * 75.66579 * 19 9 8 33 33 H 1.09000 * 115.55078 * 29.77731 * 20 19 9 34 34 H 1.08997 * 117.50030 * 0.02562 * 21 20 19 35 35 H 1.09003 * 117.49902 * 145.02113 * 21 20 19 36 36 H 1.09001 * 117.49988 * 214.98200 * 22 20 19 37 37 H 1.09003 * 117.50254 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3066 1.1244 0.0000 4 6 3.5352 0.6766 0.0006 5 35 5.0949 1.7460 0.0001 6 7 3.5096 -0.6561 0.0060 7 6 2.2704 -1.0760 0.0007 8 6 1.8240 -2.5154 0.0019 9 7 1.6788 -2.9841 -1.3827 10 6 1.0222 -4.2974 -1.4279 11 6 -0.4530 -4.1306 -1.1688 12 1 -0.8534 -3.1550 -0.9358 13 6 -1.2915 -5.2234 -1.2293 14 7 -2.5789 -5.0777 -1.0036 15 14 -0.5988 -6.9109 -1.6317 16 1 -0.2032 -7.5963 -0.3750 17 1 -1.6323 -7.7164 -2.3305 18 1 0.5896 -6.7617 -2.5094 19 6 2.9793 -3.0221 -2.0648 20 6 2.7601 -3.1289 -3.5752 21 6 3.2543 -4.3977 -4.2729 22 6 3.9969 -3.0745 -4.4742 23 1 -0.3634 0.0006 1.0276 24 1 -0.3634 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5134 26 1 0.8664 -2.5984 0.5159 27 1 2.5665 -3.1257 0.5160 28 1 1.1702 -4.7440 -2.4110 29 1 1.4539 -4.9458 -0.6654 30 1 -3.1687 -5.8467 -1.0458 31 1 3.5335 -2.1104 -1.8416 32 1 3.5464 -3.8860 -1.7180 33 1 1.8445 -2.6721 -3.9509 34 1 3.7352 -5.1566 -3.6558 35 1 2.6640 -4.7755 -5.1077 36 1 3.8949 -2.5822 -5.4413 37 1 4.9669 -2.9630 -3.9895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894004153.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:31 Heat of formation + Delta-G solvation = 111.333474 kcal Electronic energy + Delta-G solvation = -20420.054421 eV Core-core repulsion = 17281.221031 eV Total energy + Delta-G solvation = -3138.833390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.35575 -39.36942 -37.11807 -35.29672 -34.63745 -33.21923 -32.12563 -30.13427 -29.12961 -27.67719 -25.68229 -23.25205 -22.88887 -22.81284 -21.58298 -21.03413 -18.95757 -18.03471 -17.50780 -16.85714 -16.41409 -16.24599 -15.74020 -15.41580 -15.20863 -14.87705 -14.40140 -14.35747 -14.13316 -13.74887 -13.49008 -13.24884 -12.88596 -12.56657 -12.40840 -12.31154 -12.25458 -12.13189 -11.87526 -11.77573 -11.47336 -11.28486 -11.17229 -10.97935 -10.72258 -10.66874 -10.46765 -9.18755 -8.21367 -6.22581 -0.24814 0.26778 1.31249 1.39325 1.42837 1.45474 1.51080 2.40103 2.86432 2.97344 3.14666 3.27416 3.46022 3.93905 4.04553 4.06709 4.17803 4.33479 4.39982 4.47313 4.51773 4.66648 4.69993 4.72363 4.78314 4.82489 4.97201 5.02699 5.05449 5.09294 5.27184 5.37803 5.54610 5.61224 5.98067 6.19968 6.59418 6.70175 6.82897 7.40774 8.93793 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.003924 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.148833 B = 7133.511578 C = 8326.875984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.354 5.354 3 N -0.302 5.302 4 C 0.202 3.798 5 Br 0.101 6.899 6 N -0.536 5.536 7 C 0.306 3.694 8 C 0.138 3.862 9 N -0.529 5.529 10 C 0.174 3.826 11 C -0.506 4.506 12 H 0.054 0.946 13 C 0.018 3.982 14 N -0.943 5.943 15 Si 0.928 3.072 16 H -0.270 1.270 17 H -0.289 1.289 18 H -0.248 1.248 19 C 0.085 3.915 20 C -0.157 4.157 21 C -0.183 4.183 22 C -0.161 4.161 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.039 0.961 29 H -0.006 1.006 30 H 0.264 0.736 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.703 10.177 0.367 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.144 5.144 3 N -0.134 5.134 4 C -0.158 4.158 5 Br 0.180 6.820 6 N -0.266 5.266 7 C 0.029 3.971 8 C 0.007 3.993 9 N -0.254 5.254 10 C 0.047 3.953 11 C -0.544 4.544 12 H 0.072 0.928 13 C -0.180 4.180 14 N -0.584 5.584 15 Si 0.753 3.247 16 H -0.195 1.195 17 H -0.215 1.215 18 H -0.172 1.172 19 C -0.043 4.043 20 C -0.176 4.176 21 C -0.220 4.220 22 C -0.198 4.198 23 H 0.121 0.879 24 H 0.126 0.874 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.012 0.988 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.764 11.339 0.139 18.616 hybrid contribution -0.406 -1.688 0.296 1.762 sum 14.358 9.650 0.435 17.305 Atomic orbital electron populations 1.22373 0.70886 1.06377 1.05560 1.50439 1.09296 1.02871 1.51789 1.78089 1.00328 1.08966 1.26065 1.25892 0.93585 0.91620 1.04717 1.96765 1.24515 1.62983 1.97749 1.70419 1.20625 1.09432 1.26141 1.24409 0.85163 0.93194 0.94343 1.20531 1.02386 0.84068 0.92269 1.61789 1.21083 1.29615 1.12876 1.20016 0.93256 0.85462 0.96540 1.21214 0.91476 0.95388 1.46360 0.92827 1.25603 0.94840 1.02504 0.95019 1.70009 1.04661 1.31918 1.51815 0.85994 0.79007 0.80369 0.79325 1.19533 1.21550 1.17179 1.21728 0.89680 1.00768 0.92079 1.22161 0.98910 1.03139 0.93390 1.23080 1.04160 0.91434 1.03334 1.23008 0.95792 1.00055 1.00934 0.87928 0.87417 0.88209 0.87575 0.90710 0.94290 0.98828 0.92690 0.90486 0.94677 0.89046 0.88857 0.88747 0.87759 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.27 11.15 127.77 1.43 3.70 16 2 N -0.35 -11.17 4.04 -359.89 -1.45 -12.62 16 3 N -0.30 -9.84 12.70 -57.06 -0.72 -10.57 16 4 C 0.20 6.39 8.69 180.73 1.57 7.96 16 5 Br 0.10 2.41 34.13 -20.37 -0.70 1.71 16 6 N -0.54 -17.98 10.10 -186.71 -1.89 -19.87 16 7 C 0.31 10.16 6.64 138.23 0.92 11.07 16 8 C 0.14 4.64 4.91 85.56 0.42 5.06 16 9 N -0.53 -19.64 4.37 -905.38 -3.96 -23.60 16 10 C 0.17 7.40 3.67 85.56 0.31 7.71 16 11 C -0.51 -25.76 9.14 25.60 0.23 -25.53 16 12 H 0.05 2.94 7.76 -2.91 -0.02 2.92 16 13 C 0.02 0.97 5.47 84.65 0.46 1.44 16 14 N -0.94 -54.58 13.96 21.45 0.30 -54.28 16 15 Si 0.93 40.96 27.54 68.60 1.89 42.85 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 18 H -0.25 -10.21 6.45 99.48 0.64 -9.57 16 19 C 0.09 2.82 5.11 86.30 0.44 3.26 16 20 C -0.16 -4.91 4.96 -10.79 -0.05 -4.97 16 21 C -0.18 -5.00 9.98 30.62 0.31 -4.69 16 22 C -0.16 -3.94 10.25 30.62 0.31 -3.62 16 23 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 24 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.10 2.95 7.55 -2.39 -0.02 2.93 16 26 H 0.11 3.69 6.95 -2.39 -0.02 3.68 16 27 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 28 H 0.04 1.70 5.77 -2.39 -0.01 1.69 16 29 H -0.01 -0.25 7.60 -2.39 -0.02 -0.27 16 30 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 31 H 0.08 2.60 6.09 -2.39 -0.01 2.58 16 32 H 0.04 1.13 7.79 -2.38 -0.02 1.11 16 33 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.09 2.47 8.03 -2.39 -0.02 2.45 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -60.52 330.30 0.83 -59.69 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.01 Total: 15.29 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.35 Total: 1.40 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -7.72 Total: -120.94 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.89 Total: 42.85 kcal Atomic # 35 Polarization: 2.41 SS G_CDS: -0.70 Total: 1.71 kcal Total: -60.52 0.83 -59.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894004153.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.024 kcal (2) G-P(sol) polarization free energy of solvation -60.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds