Wall clock time and date at job start Tue Mar 31 2020 15:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40440 * 126.81463 * 2 1 4 4 C 1.30777 * 106.78988 * 179.97438 * 3 2 1 5 5 Br 1.89103 * 125.53948 * 179.97438 * 4 3 2 6 6 N 1.33300 * 108.92507 * 359.77384 * 4 3 2 7 7 C 1.30846 * 109.81720 * 0.38010 * 6 4 3 8 8 C 1.50702 * 125.95085 * 179.88148 * 7 6 4 9 9 N 1.46499 * 109.47396 * 269.69381 * 8 7 6 10 10 C 1.36942 * 119.99957 * 269.99963 * 9 8 7 11 11 H 1.07996 * 119.99823 * 139.76664 * 10 9 8 12 12 C 1.38809 * 120.00228 * 319.77235 * 10 9 8 13 13 N 1.31612 * 120.00299 * 159.58685 * 12 10 9 14 14 Si 1.86807 * 119.99898 * 339.58725 * 12 10 9 15 15 H 1.48492 * 109.47424 * 95.43385 * 14 12 10 16 16 H 1.48497 * 109.47066 * 215.43960 * 14 12 10 17 17 H 1.48507 * 109.46745 * 335.43251 * 14 12 10 18 18 C 1.46499 * 120.00048 * 90.00089 * 9 8 7 19 19 C 1.54964 * 110.92009 * 127.05411 * 18 9 8 20 20 C 1.54266 * 104.15520 * 156.29913 * 19 18 9 21 21 C 1.53872 * 106.64350 * 336.44208 * 20 19 18 22 22 C 1.54263 * 106.59759 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47066 * 270.02255 * 1 2 3 24 24 H 1.08994 * 109.47336 * 30.02588 * 1 2 3 25 25 H 1.09008 * 109.46829 * 150.02282 * 1 2 3 26 26 H 1.09009 * 109.46607 * 149.69523 * 8 7 6 27 27 H 1.09000 * 109.46904 * 29.69519 * 8 7 6 28 28 H 0.97004 * 119.99901 * 179.97438 * 13 12 10 29 29 H 1.09001 * 110.66980 * 3.74964 * 18 9 8 30 30 H 1.08993 * 110.48205 * 37.64662 * 19 18 9 31 31 H 1.09003 * 110.53071 * 274.97345 * 19 18 9 32 32 H 1.09001 * 110.03251 * 217.13509 * 20 19 18 33 33 H 1.09000 * 110.03962 * 95.75663 * 20 19 18 34 34 H 1.09001 * 110.03480 * 119.26509 * 21 20 19 35 35 H 1.09007 * 110.03303 * 240.64785 * 21 20 19 36 36 H 1.09002 * 110.48868 * 142.28687 * 22 21 20 37 37 H 1.09003 * 110.49096 * 264.80385 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3066 1.1243 0.0000 4 6 3.5353 0.6765 0.0006 5 35 5.0949 1.7459 0.0001 6 7 3.5097 -0.6562 0.0059 7 6 2.2705 -1.0761 0.0006 8 6 1.8240 -2.5155 0.0015 9 7 1.6791 -2.9828 -1.3794 10 6 0.4787 -2.8498 -2.0249 11 1 0.4539 -2.5565 -3.0639 12 6 -0.7062 -3.0919 -1.3436 13 7 -1.8386 -2.5972 -1.7964 14 14 -0.6936 -4.1200 0.2161 15 1 -0.6211 -3.2247 1.3986 16 1 -1.9357 -4.9309 0.2845 17 1 0.4863 -5.0218 0.2049 18 6 2.8185 -3.5923 -2.0698 19 6 2.4349 -4.9742 -2.6569 20 6 3.4424 -5.1890 -3.8052 21 6 3.9265 -3.7928 -4.2338 22 6 3.1959 -2.7769 -3.3316 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5135 26 1 0.8663 -2.5985 0.5155 27 1 2.5665 -3.1259 0.5156 28 1 -2.6667 -2.7667 -1.3205 29 1 3.6722 -3.6820 -1.3981 30 1 1.4156 -4.9552 -3.0423 31 1 2.5442 -5.7536 -1.9027 32 1 2.9539 -5.6880 -4.6421 33 1 4.2853 -5.7855 -3.4558 34 1 5.0041 -3.7112 -4.0916 35 1 3.6735 -3.6144 -5.2790 36 1 3.8599 -1.9533 -3.0689 37 1 2.3008 -2.4010 -3.8272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894039684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:34 Heat of formation + Delta-G solvation = 107.739199 kcal Electronic energy + Delta-G solvation = -21220.991104 eV Core-core repulsion = 18082.001854 eV Total energy + Delta-G solvation = -3138.989250 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.63606 -37.94671 -35.07505 -33.53380 -32.17656 -31.33355 -30.49223 -27.99510 -27.78282 -26.67266 -25.75852 -22.99251 -21.15516 -20.27142 -19.65276 -19.39497 -17.03594 -16.33966 -15.78667 -15.44650 -15.20557 -14.52034 -14.27717 -13.83648 -13.33338 -13.02441 -12.93148 -12.76154 -12.61371 -12.26740 -11.72193 -11.60229 -11.03867 -10.95324 -10.85940 -10.67338 -10.59084 -10.55659 -10.43348 -10.30888 -9.98006 -9.85011 -9.66875 -9.63920 -9.27324 -8.94092 -8.71957 -7.11127 -6.30150 -3.77412 1.20341 1.95151 2.94616 3.03240 3.14827 3.27946 3.31656 4.21034 4.67052 4.82738 4.95240 5.17154 5.31424 5.36516 5.52456 5.60937 5.64624 5.95977 5.99624 6.04465 6.11483 6.19115 6.28106 6.28696 6.34582 6.40657 6.46189 6.49475 6.65630 6.69665 6.94991 6.99468 7.10283 7.23187 7.76268 8.15569 8.39266 8.68166 9.36832 9.79693 10.82584 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.005543 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.361974 B = 5050.097539 C = 6518.040939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.351 5.351 3 N -0.302 5.302 4 C 0.210 3.790 5 Br 0.059 6.941 6 N -0.530 5.530 7 C 0.294 3.706 8 C 0.202 3.798 9 N -0.580 5.580 10 C -0.267 4.267 11 H 0.086 0.914 12 C 0.039 3.961 13 N -0.888 5.888 14 Si 0.858 3.142 15 H -0.283 1.283 16 H -0.293 1.293 17 H -0.259 1.259 18 C 0.175 3.825 19 C -0.131 4.131 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.132 4.132 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.135 0.865 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.268 0.732 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.620 2.933 2.964 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.141 5.141 3 N -0.135 5.135 4 C -0.150 4.150 5 Br 0.138 6.862 6 N -0.260 5.260 7 C 0.014 3.986 8 C 0.072 3.928 9 N -0.299 5.299 10 C -0.396 4.396 11 H 0.103 0.897 12 C -0.162 4.162 13 N -0.527 5.527 14 Si 0.686 3.314 15 H -0.211 1.211 16 H -0.221 1.221 17 H -0.183 1.183 18 C 0.068 3.932 19 C -0.170 4.170 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.172 4.172 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.153 0.847 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.935 3.835 2.962 11.054 hybrid contribution -0.728 -0.682 0.778 1.265 sum 9.206 3.154 3.740 10.425 Atomic orbital electron populations 1.22427 0.72584 1.07876 1.03172 1.50231 1.08265 1.03106 1.52489 1.78034 0.99982 1.09350 1.26117 1.25247 0.92151 0.91776 1.05845 1.96675 1.27153 1.64391 1.97956 1.70401 1.20782 1.08450 1.26394 1.26357 0.84800 0.94735 0.92704 1.20178 0.99965 0.83010 0.89649 1.44163 1.09703 1.65527 1.10513 1.18757 0.80966 1.42069 0.97835 0.89680 1.25536 0.95227 0.97395 0.98055 1.69853 0.98890 1.43186 1.40816 0.87212 0.78115 0.82619 0.83407 1.21112 1.22076 1.18304 1.21483 0.88723 0.90680 0.92274 1.22690 1.00322 0.97436 0.96563 1.22051 0.98599 0.96657 0.98571 1.22036 0.99191 0.95438 0.99141 1.22685 0.99847 0.97383 0.97265 0.91291 0.89481 0.84734 0.90644 0.89791 0.92178 0.91669 0.89793 0.92994 0.92653 0.92869 0.92804 0.92781 0.92996 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 11.15 59.85 0.67 2.16 16 2 N -0.35 -7.17 4.04 -65.09 -0.26 -7.44 16 3 N -0.30 -6.17 12.70 30.61 0.39 -5.78 16 4 C 0.21 4.12 8.69 -91.71 -0.80 3.32 16 5 Br 0.06 0.89 34.13 -68.01 -2.32 -1.43 16 6 N -0.53 -10.87 11.19 -10.36 -0.12 -10.99 16 7 C 0.29 6.04 7.56 -155.69 -1.18 4.86 16 8 C 0.20 4.04 4.60 -5.19 -0.02 4.02 16 9 N -0.58 -12.17 2.08 -164.71 -0.34 -12.52 16 10 C -0.27 -6.34 7.65 -15.06 -0.12 -6.45 16 11 H 0.09 2.27 6.91 -52.49 -0.36 1.91 16 12 C 0.04 0.95 3.48 -17.43 -0.06 0.89 16 13 N -0.89 -22.85 13.79 55.49 0.77 -22.08 16 14 Si 0.86 18.77 25.03 -169.99 -4.26 14.51 16 15 H -0.28 -5.92 6.71 56.52 0.38 -5.54 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 18 C 0.17 3.28 3.43 -65.89 -0.23 3.05 16 19 C -0.13 -2.30 6.35 -25.03 -0.16 -2.46 16 20 C -0.12 -1.79 6.80 -25.61 -0.17 -1.96 16 21 C -0.12 -1.82 6.80 -25.62 -0.17 -1.99 16 22 C -0.13 -2.42 6.39 -25.07 -0.16 -2.58 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.13 2.82 4.75 -51.92 -0.25 2.57 16 26 H 0.08 1.55 3.10 -51.92 -0.16 1.39 16 27 H 0.08 1.52 7.92 -51.93 -0.41 1.11 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.07 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.08 1.67 7.09 -51.93 -0.37 1.30 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.47 6.65 -51.93 -0.35 1.13 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -25.96 314.51 -8.65 -34.61 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.84 Total: 3.50 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.40 Total: 2.86 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.43 Total: -58.80 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.26 Total: 14.51 kcal Atomic # 35 Polarization: 0.89 SS G_CDS: -2.32 Total: -1.43 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -25.96 -8.65 -34.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894039684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.348 kcal (2) G-P(sol) polarization free energy of solvation -25.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds