Wall clock time and date at job start Tue Mar 31 2020 15:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40440 * 126.81463 * 2 1 4 4 C 1.30777 * 106.78988 * 179.97438 * 3 2 1 5 5 Br 1.89103 * 125.53948 * 179.97438 * 4 3 2 6 6 N 1.33300 * 108.92507 * 359.77384 * 4 3 2 7 7 C 1.30846 * 109.81720 * 0.38010 * 6 4 3 8 8 C 1.50702 * 125.95085 * 179.88148 * 7 6 4 9 9 N 1.46499 * 109.47396 * 269.69381 * 8 7 6 10 10 C 1.36942 * 119.99957 * 269.99963 * 9 8 7 11 11 H 1.07996 * 119.99823 * 139.76664 * 10 9 8 12 12 C 1.38809 * 120.00228 * 319.77235 * 10 9 8 13 13 N 1.31612 * 120.00299 * 159.58685 * 12 10 9 14 14 Si 1.86807 * 119.99898 * 339.58725 * 12 10 9 15 15 H 1.48492 * 109.47424 * 95.43385 * 14 12 10 16 16 H 1.48497 * 109.47066 * 215.43960 * 14 12 10 17 17 H 1.48507 * 109.46745 * 335.43251 * 14 12 10 18 18 C 1.46499 * 120.00048 * 90.00089 * 9 8 7 19 19 C 1.54964 * 110.92009 * 127.05411 * 18 9 8 20 20 C 1.54266 * 104.15520 * 156.29913 * 19 18 9 21 21 C 1.53872 * 106.64350 * 336.44208 * 20 19 18 22 22 C 1.54263 * 106.59759 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47066 * 270.02255 * 1 2 3 24 24 H 1.08994 * 109.47336 * 30.02588 * 1 2 3 25 25 H 1.09008 * 109.46829 * 150.02282 * 1 2 3 26 26 H 1.09009 * 109.46607 * 149.69523 * 8 7 6 27 27 H 1.09000 * 109.46904 * 29.69519 * 8 7 6 28 28 H 0.97004 * 119.99901 * 179.97438 * 13 12 10 29 29 H 1.09001 * 110.66980 * 3.74964 * 18 9 8 30 30 H 1.08993 * 110.48205 * 37.64662 * 19 18 9 31 31 H 1.09003 * 110.53071 * 274.97345 * 19 18 9 32 32 H 1.09001 * 110.03251 * 217.13509 * 20 19 18 33 33 H 1.09000 * 110.03962 * 95.75663 * 20 19 18 34 34 H 1.09001 * 110.03480 * 119.26509 * 21 20 19 35 35 H 1.09007 * 110.03303 * 240.64785 * 21 20 19 36 36 H 1.09002 * 110.48868 * 142.28687 * 22 21 20 37 37 H 1.09003 * 110.49096 * 264.80385 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3066 1.1243 0.0000 4 6 3.5353 0.6765 0.0006 5 35 5.0949 1.7459 0.0001 6 7 3.5097 -0.6562 0.0059 7 6 2.2705 -1.0761 0.0006 8 6 1.8240 -2.5155 0.0015 9 7 1.6791 -2.9828 -1.3794 10 6 0.4787 -2.8498 -2.0249 11 1 0.4539 -2.5565 -3.0639 12 6 -0.7062 -3.0919 -1.3436 13 7 -1.8386 -2.5972 -1.7964 14 14 -0.6936 -4.1200 0.2161 15 1 -0.6211 -3.2247 1.3986 16 1 -1.9357 -4.9309 0.2845 17 1 0.4863 -5.0218 0.2049 18 6 2.8185 -3.5923 -2.0698 19 6 2.4349 -4.9742 -2.6569 20 6 3.4424 -5.1890 -3.8052 21 6 3.9265 -3.7928 -4.2338 22 6 3.1959 -2.7769 -3.3316 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5135 26 1 0.8663 -2.5985 0.5155 27 1 2.5665 -3.1259 0.5156 28 1 -2.6667 -2.7667 -1.3205 29 1 3.6722 -3.6820 -1.3981 30 1 1.4156 -4.9552 -3.0423 31 1 2.5442 -5.7536 -1.9027 32 1 2.9539 -5.6880 -4.6421 33 1 4.2853 -5.7855 -3.4558 34 1 5.0041 -3.7112 -4.0916 35 1 3.6735 -3.6144 -5.2790 36 1 3.8599 -1.9533 -3.0689 37 1 2.3008 -2.4010 -3.8272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894039684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:34 Heat of formation + Delta-G solvation = 94.284317 kcal Electronic energy + Delta-G solvation = -21221.574551 eV Core-core repulsion = 18082.001854 eV Total energy + Delta-G solvation = -3139.572697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.18646 -39.43845 -36.62266 -35.06106 -33.93803 -32.87193 -31.96507 -29.38108 -29.25474 -28.26143 -27.37661 -24.64142 -22.69327 -21.84935 -21.08511 -20.84829 -18.74158 -17.93186 -17.35698 -17.08700 -16.70445 -16.01837 -15.79839 -15.36394 -14.78096 -14.67370 -14.46393 -14.38809 -14.05296 -13.84169 -13.29251 -13.16232 -12.64437 -12.57516 -12.22502 -12.15253 -12.03596 -11.93765 -11.84846 -11.79756 -11.64062 -11.23901 -11.18867 -11.11874 -10.84730 -10.62327 -10.36255 -8.83346 -8.18651 -5.65205 -0.21817 0.39225 1.29504 1.42489 1.48590 1.56692 1.59941 2.39192 3.02480 3.21053 3.25613 3.63726 3.98182 3.99719 4.08826 4.21804 4.24997 4.41830 4.49395 4.62337 4.75455 4.75593 4.86059 4.87504 4.91162 4.98548 5.13834 5.15431 5.22451 5.30590 5.49952 5.56294 5.66467 5.68930 5.96219 6.25277 6.81885 6.91577 7.54140 7.98815 8.97760 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.005543 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.361974 B = 5050.097539 C = 6518.040939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.359 5.359 3 N -0.316 5.316 4 C 0.199 3.801 5 Br 0.099 6.901 6 N -0.537 5.537 7 C 0.285 3.715 8 C 0.202 3.798 9 N -0.586 5.586 10 C -0.251 4.251 11 H 0.042 0.958 12 C 0.009 3.991 13 N -0.927 5.927 14 Si 0.905 3.095 15 H -0.265 1.265 16 H -0.307 1.307 17 H -0.249 1.249 18 C 0.168 3.832 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.128 4.128 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.267 0.733 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.626 2.264 3.983 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.149 5.149 3 N -0.149 5.149 4 C -0.161 4.161 5 Br 0.178 6.822 6 N -0.268 5.268 7 C 0.005 3.995 8 C 0.072 3.928 9 N -0.306 5.306 10 C -0.381 4.381 11 H 0.060 0.940 12 C -0.190 4.190 13 N -0.569 5.569 14 Si 0.732 3.268 15 H -0.192 1.192 16 H -0.235 1.235 17 H -0.173 1.173 18 C 0.062 3.938 19 C -0.167 4.167 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.167 4.167 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.129 0.871 26 H 0.089 0.911 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.967 3.167 3.987 13.005 hybrid contribution -1.269 -0.356 0.404 1.379 sum 10.698 2.811 4.391 11.901 Atomic orbital electron populations 1.22442 0.71903 1.07047 1.04629 1.50378 1.08833 1.03229 1.52456 1.77993 1.00476 1.09639 1.26807 1.25925 0.93375 0.92003 1.04823 1.96702 1.24530 1.63143 1.97804 1.70409 1.20728 1.09002 1.26627 1.26419 0.85142 0.94985 0.92963 1.20250 1.00444 0.83153 0.88958 1.44207 1.09372 1.66007 1.10969 1.18349 0.82361 1.41165 0.96197 0.93985 1.25846 0.94647 0.97979 1.00534 1.69950 0.99502 1.44787 1.42620 0.86439 0.77590 0.81411 0.81313 1.19173 1.23546 1.17285 1.21691 0.88366 0.91281 0.92461 1.22611 0.99394 0.96922 0.97785 1.22024 0.98662 0.96691 0.97725 1.22010 0.99963 0.94535 0.98633 1.22570 0.98479 0.97922 0.97733 0.88687 0.88719 0.87119 0.91121 0.87459 0.92309 0.90192 0.92932 0.91922 0.91885 0.90265 0.90705 0.92260 0.94051 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.96 11.15 127.77 1.43 4.38 16 2 N -0.36 -14.45 4.04 -359.86 -1.45 -15.90 16 3 N -0.32 -12.64 12.70 -57.06 -0.72 -13.36 16 4 C 0.20 7.52 8.69 180.73 1.57 9.09 16 5 Br 0.10 2.81 34.13 -20.37 -0.70 2.12 16 6 N -0.54 -21.30 11.19 -186.70 -2.09 -23.39 16 7 C 0.28 11.43 7.56 138.23 1.05 12.48 16 8 C 0.20 7.78 4.60 85.63 0.39 8.18 16 9 N -0.59 -24.45 2.08 -675.02 -1.40 -25.85 16 10 C -0.25 -12.23 7.65 84.03 0.64 -11.58 16 11 H 0.04 2.40 6.91 -2.91 -0.02 2.38 16 12 C 0.01 0.42 3.48 84.86 0.30 0.71 16 13 N -0.93 -49.13 13.79 21.65 0.30 -48.83 16 14 Si 0.91 38.27 25.03 68.60 1.72 39.98 16 15 H -0.27 -10.36 6.71 99.48 0.67 -9.69 16 16 H -0.31 -13.65 7.11 99.48 0.71 -12.94 16 17 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 18 C 0.17 6.12 3.43 46.31 0.16 6.28 16 19 C -0.13 -4.33 6.35 31.70 0.20 -4.12 16 20 C -0.11 -3.05 6.80 31.32 0.21 -2.84 16 21 C -0.11 -3.21 6.80 31.32 0.21 -3.00 16 22 C -0.13 -4.65 6.39 31.67 0.20 -4.44 16 23 H 0.09 2.91 8.14 -2.39 -0.02 2.90 16 24 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 25 H 0.11 4.69 4.75 -2.38 -0.01 4.68 16 26 H 0.07 2.79 3.10 -2.38 -0.01 2.79 16 27 H 0.11 3.61 7.92 -2.39 -0.02 3.59 16 28 H 0.27 13.54 8.31 -92.71 -0.77 12.76 16 29 H 0.08 2.70 7.85 -2.39 -0.02 2.69 16 30 H 0.05 2.10 7.09 -2.39 -0.02 2.09 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.59 6.65 -2.39 -0.02 1.57 16 Total: -1.00 -56.26 314.51 3.06 -53.20 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.05 Total: 16.90 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 6.36 Total: 15.13 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -5.37 Total: -127.34 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.72 Total: 39.98 kcal Atomic # 35 Polarization: 2.81 SS G_CDS: -0.70 Total: 2.12 kcal Total: -56.26 3.06 -53.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894039684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.488 kcal (2) G-P(sol) polarization free energy of solvation -56.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds